import wc, objects output_file = sys.argv[1] use_neighbor = sys.argv[2] == 'T' ignore_pos = sys.argv[3] == 'T' max_neighbor = int(sys.argv[4]) num_trials = int(sys.argv[5]) pseudo_total = float(sys.argv[6]) to_neighbor_p_value = sys.argv[7] == 'T' import global_stuff params = global_stuff.get_param() import helper helper.parse_p_input(params, sys.argv[8:]) #l = wc.get_stuff(objects.filtered_mutation_list_given_protein_list, params) l = wc.get_stuff(objects.filtered_mutation_list, params) i = 0 my_l = [] for m in l: if i % size == rank: my_l.append(m) i += 1 import objects
""" in_list absolute path out_list absolute path optional specifying params """ in_list = sys.argv[1] out_list = sys.argv[2] searching_for = sys.argv[3:] f = open(in_list, 'r') p = global_stuff.get_param() helper.parse_p_input(p, sys.argv[3:]) completed = [] import objects #to_check_for = [objects.general_distance, objects.general_msa, objects.neighbors_w_weight_w] #to_check_for = [objects.neighbors_] import wrapper to_check_for = [objects.dW] #to_check_for = [wrapper.my_msa_obj_wrapper, objects.general_neighbors_w_weight_w] global_stuff.whether_to_look_at_whether_to_override = False import wc i = 0