Python netcdfの例

コード例 #1

ファイル: test_netcdf.py プロジェクト: onisimchukv/hpc-container-maker

    def test_defaults_centos(self):
        """Default netcdf building block"""
        n = netcdf()
        self.assertEqual(str(n),
r'''# NetCDF version 4.6.1, NetCDF C++ version 4.3.0, NetCDF Fortran
# version 4.4.4
RUN yum install -y \
        ca-certificates \
        file \
        libcurl-devel \
        m4 \
        make \
        wget \
        zlib-devel && \
    rm -rf /var/cache/yum/*
RUN mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-4.6.1.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/netcdf-4.6.1.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-4.6.1 &&  CPPFLAGS=-I/usr/local/hdf5/include LDFLAGS=-L/usr/local/hdf5/lib ./configure --prefix=/usr/local/netcdf && \
    make -j4 && \
    make -j4 install && \
    rm -rf /var/tmp/netcdf-4.6.1.tar.gz /var/tmp/netcdf-4.6.1 && \
    mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-cxx4-4.3.0.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/netcdf-cxx4-4.3.0.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-cxx4-4.3.0 &&  CPPFLAGS=-I/usr/local/netcdf/include LD_LIBRARY_PATH='/usr/local/netcdf/lib:$LD_LIBRARY_PATH' LDFLAGS=-L/usr/local/netcdf/lib ./configure --prefix=/usr/local/netcdf && \
    make -j4 && \
    make -j4 install && \
    rm -rf /var/tmp/netcdf-cxx4-4.3.0.tar.gz /var/tmp/netcdf-cxx4-4.3.0 && \
    mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-fortran-4.4.4.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/netcdf-fortran-4.4.4.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-fortran-4.4.4 &&  CPPFLAGS=-I/usr/local/netcdf/include LD_LIBRARY_PATH='/usr/local/netcdf/lib:$LD_LIBRARY_PATH' LDFLAGS=-L/usr/local/netcdf/lib ./configure --prefix=/usr/local/netcdf && \
    make -j4 && \
    make -j4 install && \
    rm -rf /var/tmp/netcdf-fortran-4.4.4.tar.gz /var/tmp/netcdf-fortran-4.4.4
ENV LD_LIBRARY_PATH=/usr/local/netcdf/lib:$LD_LIBRARY_PATH \
    PATH=/usr/local/netcdf/bin:$PATH''')

コード例 #2

ファイル: test_netcdf.py プロジェクト: justcherie/hpc-container-maker

    def test_defaults_centos(self):
        """Default netcdf building block"""
        n = netcdf()
        self.assertEqual(str(n),
r'''# NetCDF version 4.7.3, NetCDF C++ version 4.3.1, NetCDF Fortran
# version 4.5.2
RUN yum install -y \
        ca-certificates \
        file \
        libcurl-devel \
        m4 \
        make \
        wget \
        zlib-devel && \
    rm -rf /var/cache/yum/*
RUN mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://github.com/Unidata/netcdf-c/archive/v4.7.3.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/v4.7.3.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-c-4.7.3 &&  CPPFLAGS=-I/usr/local/hdf5/include LDFLAGS=-L/usr/local/hdf5/lib ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/v4.7.3.tar.gz /var/tmp/netcdf-c-4.7.3 && \
    mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://github.com/Unidata/netcdf-cxx4/archive/v4.3.1.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/v4.3.1.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-cxx4-4.3.1 &&  CPPFLAGS='-I/usr/local/netcdf/include -I/usr/local/hdf5/include' LD_LIBRARY_PATH='/usr/local/netcdf/lib:$LD_LIBRARY_PATH' LDFLAGS=-L/usr/local/netcdf/lib ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/v4.3.1.tar.gz /var/tmp/netcdf-cxx4-4.3.1 && \
    mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://github.com/Unidata/netcdf-fortran/archive/v4.5.2.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/v4.5.2.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-fortran-4.5.2 &&  CPPFLAGS='-I/usr/local/netcdf/include -I/usr/local/hdf5/include' LD_LIBRARY_PATH='/usr/local/netcdf/lib:$LD_LIBRARY_PATH' LDFLAGS=-L/usr/local/netcdf/lib ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/v4.5.2.tar.gz /var/tmp/netcdf-fortran-4.5.2
ENV LD_LIBRARY_PATH=/usr/local/netcdf/lib:$LD_LIBRARY_PATH \
    PATH=/usr/local/netcdf/bin:$PATH''')

コード例 #3

ファイル: test_netcdf.py プロジェクト: onisimchukv/hpc-container-maker

    def test_runtime(self):
        """Runtime"""
        n = netcdf()
        r = n.runtime()
        self.assertEqual(r,
r'''# NetCDF
RUN apt-get update -y && \
    apt-get install -y --no-install-recommends \
        zlib1g && \
    rm -rf /var/lib/apt/lists/*
COPY --from=0 /usr/local/netcdf /usr/local/netcdf
ENV LD_LIBRARY_PATH=/usr/local/netcdf/lib:$LD_LIBRARY_PATH \
    PATH=/usr/local/netcdf/bin:$PATH''')

コード例 #4

ファイル: test_netcdf.py プロジェクト: steveabate/hpc-container-maker

    def test_runtime(self):
        """Runtime"""
        n = netcdf()
        r = n.runtime()
        self.assertEqual(
            r, r'''# NetCDF
RUN apt-get update -y && \
    DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
        zlib1g && \
    rm -rf /var/lib/apt/lists/*
COPY --from=0 /usr/local/netcdf /usr/local/netcdf
ENV CPATH=/usr/local/netcdf/include:$CPATH \
    LD_LIBRARY_PATH=/usr/local/netcdf/lib:$LD_LIBRARY_PATH \
    LIBRARY_PATH=/usr/local/netcdf/lib:$LIBRARY_PATH \
    PATH=/usr/local/netcdf/bin:$PATH''')

コード例 #5

ファイル: test_netcdf.py プロジェクト: steveabate/hpc-container-maker

    def test_ldconfig(self):
        """ldconfig option"""
        n = netcdf(ldconfig=True,
                   version='4.6.1',
                   version_cxx='4.3.0',
                   version_fortran='4.4.4')
        self.assertEqual(
            str(n),
            r'''# NetCDF version 4.6.1, NetCDF C++ version 4.3.0, NetCDF Fortran
# version 4.4.4
RUN apt-get update -y && \
    DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
        ca-certificates \
        file \
        libcurl4-openssl-dev \
        m4 \
        make \
        wget \
        zlib1g-dev && \
    rm -rf /var/lib/apt/lists/*
RUN mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://github.com/Unidata/netcdf-c/archive/v4.6.1.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/v4.6.1.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-c-4.6.1 &&   ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    echo "/usr/local/netcdf/lib" >> /etc/ld.so.conf.d/hpccm.conf && ldconfig && \
    rm -rf /var/tmp/netcdf-c-4.6.1 /var/tmp/v4.6.1.tar.gz
ENV CPATH=/usr/local/netcdf/include:$CPATH \
    LIBRARY_PATH=/usr/local/netcdf/lib:$LIBRARY_PATH \
    PATH=/usr/local/netcdf/bin:$PATH
RUN mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://github.com/Unidata/netcdf-cxx4/archive/v4.3.0.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/v4.3.0.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-cxx4-4.3.0 &&   ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    echo "/usr/local/netcdf/lib" >> /etc/ld.so.conf.d/hpccm.conf && ldconfig && \
    rm -rf /var/tmp/netcdf-cxx4-4.3.0 /var/tmp/v4.3.0.tar.gz
RUN mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://github.com/Unidata/netcdf-fortran/archive/v4.4.4.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/v4.4.4.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-fortran-4.4.4 &&   ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    echo "/usr/local/netcdf/lib" >> /etc/ld.so.conf.d/hpccm.conf && ldconfig && \
    rm -rf /var/tmp/netcdf-fortran-4.4.4 /var/tmp/v4.4.4.tar.gz''')

コード例 #6

    def test_ldconfig(self):
        """ldconfig option"""
        n = netcdf(ldconfig=True,
                   version='4.6.1',
                   version_cxx='4.3.0',
                   version_fortran='4.4.4')
        self.assertEqual(
            str(n),
            r'''# NetCDF version 4.6.1, NetCDF C++ version 4.3.0, NetCDF Fortran
# version 4.4.4
RUN apt-get update -y && \
    DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
        ca-certificates \
        file \
        libcurl4-openssl-dev \
        m4 \
        make \
        wget \
        zlib1g-dev && \
    rm -rf /var/lib/apt/lists/*
RUN mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.6.1.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/netcdf-4.6.1.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-4.6.1 &&  CPPFLAGS=-I/usr/local/hdf5/include LDFLAGS=-L/usr/local/hdf5/lib ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    echo "/usr/local/netcdf/lib" >> /etc/ld.so.conf.d/hpccm.conf && ldconfig && \
    rm -rf /var/tmp/netcdf-4.6.1.tar.gz /var/tmp/netcdf-4.6.1 && \
    mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-cxx4-4.3.0.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/netcdf-cxx4-4.3.0.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-cxx4-4.3.0 &&  CPPFLAGS=-I/usr/local/netcdf/include LD_LIBRARY_PATH='/usr/local/netcdf/lib:$LD_LIBRARY_PATH' LDFLAGS=-L/usr/local/netcdf/lib ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/netcdf-cxx4-4.3.0.tar.gz /var/tmp/netcdf-cxx4-4.3.0 && \
    mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-4.4.4.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/netcdf-fortran-4.4.4.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-fortran-4.4.4 &&  CPPFLAGS=-I/usr/local/netcdf/include LD_LIBRARY_PATH='/usr/local/netcdf/lib:$LD_LIBRARY_PATH' LDFLAGS=-L/usr/local/netcdf/lib ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/netcdf-fortran-4.4.4.tar.gz /var/tmp/netcdf-fortran-4.4.4
ENV PATH=/usr/local/netcdf/bin:$PATH''')

コード例 #7

ファイル: test_netcdf.py プロジェクト: steveabate/hpc-container-maker

    def test_defaults_ubuntu(self):
        """Default netcdf building block"""
        n = netcdf()
        self.assertEqual(
            str(n),
            r'''# NetCDF version 4.7.3, NetCDF C++ version 4.3.1, NetCDF Fortran
# version 4.5.2
RUN apt-get update -y && \
    DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
        ca-certificates \
        file \
        libcurl4-openssl-dev \
        m4 \
        make \
        wget \
        zlib1g-dev && \
    rm -rf /var/lib/apt/lists/*
RUN mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://github.com/Unidata/netcdf-c/archive/v4.7.3.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/v4.7.3.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-c-4.7.3 &&   ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/netcdf-c-4.7.3 /var/tmp/v4.7.3.tar.gz
ENV CPATH=/usr/local/netcdf/include:$CPATH \
    LD_LIBRARY_PATH=/usr/local/netcdf/lib:$LD_LIBRARY_PATH \
    LIBRARY_PATH=/usr/local/netcdf/lib:$LIBRARY_PATH \
    PATH=/usr/local/netcdf/bin:$PATH
RUN mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://github.com/Unidata/netcdf-cxx4/archive/v4.3.1.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/v4.3.1.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-cxx4-4.3.1 &&   ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/netcdf-cxx4-4.3.1 /var/tmp/v4.3.1.tar.gz
RUN mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp https://github.com/Unidata/netcdf-fortran/archive/v4.5.2.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/v4.5.2.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-fortran-4.5.2 &&   ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/netcdf-fortran-4.5.2 /var/tmp/v4.5.2.tar.gz''')

コード例 #8

    def test_defaults_ubuntu(self):
        """Default netcdf building block"""
        n = netcdf()
        self.assertEqual(
            str(n),
            r'''# NetCDF version 4.7.0, NetCDF C++ version 4.3.0, NetCDF Fortran
# version 4.4.5
RUN apt-get update -y && \
    DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
        ca-certificates \
        file \
        libcurl4-openssl-dev \
        m4 \
        make \
        wget \
        zlib1g-dev && \
    rm -rf /var/lib/apt/lists/*
RUN mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-c-4.7.0.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/netcdf-c-4.7.0.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-c-4.7.0 &&  CPPFLAGS=-I/usr/local/hdf5/include LDFLAGS=-L/usr/local/hdf5/lib ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/netcdf-c-4.7.0.tar.gz /var/tmp/netcdf-c-4.7.0 && \
    mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-cxx4-4.3.0.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/netcdf-cxx4-4.3.0.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-cxx4-4.3.0 &&  CPPFLAGS=-I/usr/local/netcdf/include LD_LIBRARY_PATH='/usr/local/netcdf/lib:$LD_LIBRARY_PATH' LDFLAGS=-L/usr/local/netcdf/lib ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/netcdf-cxx4-4.3.0.tar.gz /var/tmp/netcdf-cxx4-4.3.0 && \
    mkdir -p /var/tmp && wget -q -nc --no-check-certificate -P /var/tmp ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-4.4.5.tar.gz && \
    mkdir -p /var/tmp && tar -x -f /var/tmp/netcdf-fortran-4.4.5.tar.gz -C /var/tmp -z && \
    cd /var/tmp/netcdf-fortran-4.4.5 &&  CPPFLAGS=-I/usr/local/netcdf/include LD_LIBRARY_PATH='/usr/local/netcdf/lib:$LD_LIBRARY_PATH' LDFLAGS=-L/usr/local/netcdf/lib ./configure --prefix=/usr/local/netcdf && \
    make -j$(nproc) && \
    make -j$(nproc) install && \
    rm -rf /var/tmp/netcdf-fortran-4.4.5.tar.gz /var/tmp/netcdf-fortran-4.4.5
ENV LD_LIBRARY_PATH=/usr/local/netcdf/lib:$LD_LIBRARY_PATH \
    PATH=/usr/local/netcdf/bin:$PATH''')