def test_get_script_info(self):
"""get_script_info runs without error"""
self.obs=get_script_info(self.script_dir,'make_qiime_rst_file')
for i in self.obs:
self.assertTrue(i in self.test_script_info)
self.assertEqual(len(self.obs[i]),len(self.test_script_info[i]))
def setUp(self):
""" """
self.headers=['head1','head2','head3']
self.test_option_file=make_option('-i', '--coord_fname',
help='Input principal coordinates filepath',
type='existing_path')
self.test_option_colorby=make_option('-b', '--colorby', dest='colorby',\
help='Comma-separated list categories metadata categories' +\
' (column headers) [default=color by all]')
self.test_option_custom_axes=make_option('-a', '--custom_axes',
help='This is the category from the metadata mapping file' +\
' [default: %default]')
self.test_option_choice=make_option('-k', '--background_color',
help='Background color to use in the plots.[default: %default]',
default='black',type='choice',choices=['black','white'])
self.test_option_float=make_option('--ellipsoid_opacity',
help='Used only when plotting ellipsoids for jackknifed' +\
' beta diversity (i.e. using a directory of coord files' +\
' [default=%default]',
default=0.33,type=float)
self.test_option_int=make_option('--n_taxa_keep',
help='Used only when generating BiPlots. This is the number '+\
' to display. Use -1 to display all. [default: %default]',
default=10,type=int)
self.test_option_true=make_option('--suppress_html_output',
dest='suppress_html_output',\
default=False,action='store_true',
help='Suppress HTML output. [default: %default]')
self.test_option_false=make_option('--suppress_html_output',
dest='suppress_html_output',\
default=True,action='store_false',
help='Suppress HTML output. [default: %default]')
self.option_labels={'coord_fname':'Principal coordinates filepath',
'colorby': 'Colorby category',
'background_color': 'Background color',
'ellipsoid_opacity':'Ellipsoid opacity',
'n_taxa_keep': '# of taxa to keep',
'custom_axes':'Custom Axis'}
self.script_dir = get_qiime_scripts_dir()
self.test_script_info=get_script_info(self.script_dir,
'make_qiime_rst_file')
