def test_recallFunctionAlone(self):
#Tests the tuple generation from the sentences
labeled = hw5.generate_tuples_from_file(self.training_file)
labeled[0][3] = ("phosphatases", "O") # incorrect boundary (ends early)
labeled[0][5] = ("5", "O") # incorrect boundary (begins late)
labeled[0][6] = ("-", "B") # incorrect boundary (begins late)
labeled[1][4] = ("the", "B") # should be O
train_tups = [tup for sent in self.train_tups for tup in sent]
labeled = [tup for sent in labeled for tup in sent]
recall = hw5.recall(train_tups, labeled)
# 1 correct / 3 possible
self.assertAlmostEqual(.33333333, recall)
labeled = hw5.generate_tuples_from_file(self.training_file)
labeled[1][4] = ("the", "B") # should be O
labeled = [tup for sent in labeled for tup in sent]
recall = hw5.recall(train_tups, labeled)
# 3 correct / 3 possible
self.assertEqual(1, recall)
def test_f1Function(self):
#Tests the tuple generation from the sentences
labeled = hw5.generate_tuples_from_file(self.training_file)
labeled[0][3] = ("phosphatases", "O") # incorrect boundary (ends early)
labeled[0][5] = ("5", "O") # incorrect boundary (begins late)
labeled[0][6] = ("-", "B") # incorrect boundary (begins late)
labeled[1][4] = ("the", "B") # should be O
train_tups = [tup for sent in self.train_tups for tup in sent]
labeled = [tup for sent in labeled for tup in sent]
f1 = hw5.f1(train_tups, labeled)
realf1 = (2 * .25 * .333333) / (.25 + .333333)
self.assertAlmostEqual(realf1, f1, places=5)
labeled = hw5.generate_tuples_from_file(self.training_file)
labeled[1][4] = ("the", "B") # should be O
labeled = [tup for sent in labeled for tup in sent]
f1 = hw5.f1(train_tups, labeled)
realf1 = (2 * .75 * 1) / (.75 + 1)
self.assertAlmostEqual(realf1, f1, places=5)
def test_precisionFunctionAlone(self):
#Tests the tuple generation from the sentences
labeled = hw5.generate_tuples_from_file(self.training_file)
labeled[0][3] = ("phosphatases", "O") # incorrect boundary (ends early)
labeled[0][5] = ("5", "O") # incorrect boundary (begins late)
labeled[0][6] = ("-", "B") # incorrect boundary (begins late)
labeled[1][4] = ("the", "B") # should be O
train_tups = [tup for sent in self.train_tups for tup in sent]
labeled = [tup for sent in labeled for tup in sent]
precision = hw5.precision(train_tups, labeled)
# 1 correct / 4 guessed
self.assertEqual(.25, precision)
labeled = hw5.generate_tuples_from_file(self.training_file)
labeled[1][4] = ("the", "B") # should be O
labeled = [tup for sent in labeled for tup in sent]
precision = hw5.precision(train_tups, labeled)
# 3 correct / 4 guessed
self.assertEqual(.75, precision)
def setUp(self):
#Sets the Training File Path
# Feel free to edit to reflect where they are on your machine
self.training_file = "minitrain.txt"
self.train_tups = hw5.generate_tuples_from_file(self.training_file)