def test_candidates(self, pre, post):
"""
Names containing "settings" are candidates.
"""
modname = pre + 'settings' + post
note('modname={!r}'.format(modname))
self.assertTrue(utils.is_candidate_name(modname))
def test_scaling_search(vals, threads):
note('Searching with %d threads' % threads)
good = random.choice(vals)
def funcer(t):
return t == good
res = scaling.search(funcer, vals, threads=threads)
assert res == good
def test_sparse_adagrad_empty(self, inputs, lr, epsilon,
data_strategy, gc, dc):
param, momentum = inputs
momentum = np.abs(momentum)
lr = np.array([lr], dtype=np.float32)
grad = np.empty(shape=(0,) + param.shape[1:], dtype=np.float32)
indices = np.empty(shape=(0,), dtype=np.int64)
hypothesis.note('indices.shape: %s' % str(indices.shape))
op = core.CreateOperator(
"SparseAdagrad",
["param", "momentum", "indices", "grad", "lr"],
["param", "momentum"],
epsilon=epsilon,
device_option=gc)
def ref_sparse(param, momentum, indices, grad, lr):
param_out = np.copy(param)
momentum_out = np.copy(momentum)
return (param_out, momentum_out)
self.assertReferenceChecks(
gc, op,
[param, momentum, indices, grad, lr],
ref_sparse)
def test_high_order_derivative(x):
small_radius = ['sqrt', 'log', 'log2', 'log10', 'arccos', 'log1p',
'arcsin', 'arctan', 'arcsinh', 'tan', 'tanh',
'arctanh', 'arccosh']
r = 0.0061
n_max = 20
y = x
for name in function_names + ['arccosh', 'arctanh']:
f, true_df = get_function(name, n=1)
if name == 'arccosh':
y = y + 1
vals, info = derivative(f, y, r=r, n=n_max, full_output=True,
step_ratio=1.6)
for n in range(1, n_max):
f, true_df = get_function(name, n=n)
if true_df is None:
continue
tval = true_df(y)
aerr0 = info.error_estimate[n] + 1e-15
aerr = min(aerr0, max(np.abs(tval)*1e-6, 1e-8))
print(n, name, y, vals[n], tval, info.iterations, aerr0, aerr)
note("{}, {}, {}, {}, {}, {}, {}, {}".format(
n, name, y, vals[n], tval, info.iterations,
aerr0, aerr))
assert_allclose(np.real(vals[n]), tval, rtol=1e-6, atol=aerr)
def teardown(self):
"""On teardown we clean up after ourselves as usual, but we also
do some additional testing: We generate a .t file based on our test
run using run-test.py -i to get the correct output.
We then test it in a number of other configurations, verifying that
each passes the same test."""
super(verifyingstatemachine, self).teardown()
try:
shutil.rmtree(self.repodir)
except OSError:
pass
ttest = os.linesep.join(" " + l for l in self.log)
os.chdir(testtmp)
path = os.path.join(testtmp, "test-generated.t")
with open(path, 'w') as o:
o.write(ttest + os.linesep)
with open(os.devnull, "w") as devnull:
rewriter = subprocess.Popen(
[runtests, "--local", "-i", path], stdin=subprocess.PIPE,
stdout=devnull, stderr=devnull,
)
rewriter.communicate("yes")
with open(path, 'r') as i:
ttest = i.read()
e = None
if not self.failed:
try:
output = subprocess.check_output([
runtests, path, "--local", "--pure"
], stderr=subprocess.STDOUT)
assert "Ran 1 test" in output, output
for ext in (
self.all_extensions - self.non_skippable_extensions
):
tf = os.path.join(testtmp, "test-generated-no-%s.t" % (
ext,
))
with open(tf, 'w') as o:
for l in ttest.splitlines():
if l.startswith(" $ hg"):
l = l.replace(
"--config %s=" % (
extensionconfigkey(ext),), "")
o.write(l + os.linesep)
with open(tf, 'r') as r:
t = r.read()
assert ext not in t, t
output = subprocess.check_output([
runtests, tf, "--local",
], stderr=subprocess.STDOUT)
assert "Ran 1 test" in output, output
except subprocess.CalledProcessError as e:
note(e.output)
if self.failed or e is not None:
with open(savefile, "wb") as o:
o.write(ttest)
if e is not None:
raise e
def test_find_biggest_gap(lons):
assume(lons)
start, end = locations.find_biggest_gap(lons)
note("start, end: {}. {}".format(start, end))
# so all the other lons lie between end and start
xstart = start
if start <= end:
xstart += 360.0
xstart = twoplaces(xstart)
end = twoplaces(end)
epsilon = .1
for lon in lons:
lon = twoplaces(lon)
if lon < end:
lon += Decimal('360.0')
assert(lon <= xstart)
def on_evict(self, key, value, score):
note("Evicted %r" % (key,))
assert score == scores[key]
del scores[key]
if len(scores) > 1:
assert score <= min(v for k, v in scores.items() if k != last_entry[0])
evicted.add(key)
def test_sparse_adagrad(self, inputs, lr, epsilon,
data_strategy, gc, dc):
param, momentum, grad = inputs
momentum = np.abs(momentum)
lr = np.array([lr], dtype=np.float32)
# Create an indexing array containing values that are lists of indices,
# which index into grad
indices = data_strategy.draw(
hu.tensor(dtype=np.int64,
elements=st.sampled_from(np.arange(grad.shape[0]))),
)
hypothesis.note('indices.shape: %s' % str(indices.shape))
# For now, the indices must be unique
hypothesis.assume(np.array_equal(np.unique(indices.flatten()),
np.sort(indices.flatten())))
# Sparsify grad
grad = grad[indices]
op = core.CreateOperator(
"SparseAdagrad",
["param", "momentum", "indices", "grad", "lr"],
["param", "momentum"],
epsilon=epsilon,
device_option=gc)
def ref_sparse(param, momentum, indices, grad, lr, ref_using_fp16=False):
param_out = np.copy(param)
momentum_out = np.copy(momentum)
for i, index in enumerate(indices):
param_out[index], momentum_out[index] = self.ref_adagrad(
param[index],
momentum[index],
grad[i],
lr,
epsilon,
using_fp16=ref_using_fp16
)
return (param_out, momentum_out)
ref_using_fp16_values = [False]
if dc == hu.gpu_do:
ref_using_fp16_values.append(True)
for ref_using_fp16 in ref_using_fp16_values:
if(ref_using_fp16):
print('test_sparse_adagrad with half precision embedding')
momentum_i = momentum.astype(np.float16)
param_i = param.astype(np.float16)
else:
print('test_sparse_adagrad with full precision embedding')
momentum_i = momentum.astype(np.float32)
param_i = param.astype(np.float32)
self.assertReferenceChecks(
gc, op, [param_i, momentum_i, indices, grad, lr, ref_using_fp16],
ref_sparse
)
def test_row_wise_sparse_adagrad_empty(self, inputs, lr, epsilon,
data_strategy, gc, dc):
param = inputs[0]
lr = np.array([lr], dtype=np.float32)
momentum = data_strategy.draw(
hu.tensor1d(min_len=param.shape[0], max_len=param.shape[0],
elements=hu.elements_of_type(dtype=np.float32))
)
momentum = np.abs(momentum)
grad = np.empty(shape=(0,) + param.shape[1:], dtype=np.float32)
indices = np.empty(shape=(0,), dtype=np.int64)
hypothesis.note('indices.shape: %s' % str(indices.shape))
op = core.CreateOperator(
"RowWiseSparseAdagrad",
["param", "momentum", "indices", "grad", "lr"],
["param", "momentum"],
epsilon=epsilon,
device_option=gc)
def ref_row_wise_sparse(param, momentum, indices, grad, lr):
param_out = np.copy(param)
momentum_out = np.copy(momentum)
return (param_out, momentum_out)
self.assertReferenceChecks(
gc, op,
[param, momentum, indices, grad, lr],
ref_row_wise_sparse)
def test_scaling_map(threads, vals):
note('Mapping with %d threads' % threads)
def funcer(t):
m, p, n = t
return pow(m, p, n)
res = scaling.map(funcer, vals, threads=threads)
assert set(res) == set(map(funcer, vals))
def test_add_images(images, a, b, scale, bias):
assert len(images) == 2
assert images[0].shape == images[1].shape
image_1 = twoDto3d(images[0])
image_2 = twoDto3d(images[1])
image_sum = np.clip(np.ceil(scale * (a * image_1 + b * image_2) + bias), 0, 255)
compl_proc = subprocess.check_output([
"./cvpi_tests_hyp",
"cvpi_image_add",
image_hex(image_1),
image_hex(image_2),
str(images[0].shape[0]),
str(images[0].shape[1]),
str(a), str(b), format(scale, 'f'), format(bias, 'f')])
compl_proc_str = ''.join(map(chr, compl_proc))
numpy_image_str = image_hex(image_sum) + "\n"
h.note(str(images[0].shape[0]) + " " + str(images[0].shape[1]))
h.note(image_hex(image_1))
h.note(image_hex(image_2))
h.note("cvpi: " + compl_proc_str)
h.note("numpy: " + numpy_image_str)
assert numpy_image_str == compl_proc_str
def swagger_fuzzer(data):
request = get_request(data, SPEC, SPEC_HOST)
note("Curl command: {}".format(to_curl_command(request)))
result = s.send(request)
for validator in VALIDATORS:
validator(SPEC, request, result, settings)
def test_identity(self, b_indexes):
"""
b''.join(_chunks(b, indexes)) == b
"""
(b, indexes) = b_indexes
cs = list(_chunks(b, indexes))
note('chunks = {!r}'.format(cs))
self.assertEqual(b''.join(_chunks(b, indexes)), b)
def test_can_eval_stream_inside_find(stream, rnd):
x = find(
st.lists(st.integers(min_value=0), min_size=10),
lambda t: any(t > s for (t, s) in zip(t, stream)),
settings=settings(database=None, max_shrinks=2000, max_examples=2000),
)
note("x: %r" % (x,))
note("Evalled: %r" % (stream,))
assert len([1 for i, v in enumerate(x) if stream[i] < v]) == 1
def test_modified_exceptions(self, pre, post):
"""
Prefixed and suffixed versions of the special-cased names are not excepted.
"""
assume(pre or post) # Require at least some prefix or suffix
for special in self.specials:
modname = pre + special + post
note('modname={!r}'.format(modname))
self.assertTrue(utils.is_candidate_name(modname))
def test_uri(self, url):
# type: (URL) -> None
"""
L{HTTPRequestWrappingIRequest.uri} matches the underlying legacy
request URI.
"""
try:
uri = url.asURI() # Normalize as (network-friendly) URI
except UnicodeError:
# This happens due to a bug in hyperlink:
# https://github.com/python-hyper/hyperlink/issues/19
# For now, all we can do is tell hypothesis to skip the sample that
# got us here.
assume(False)
path = (
uri.replace(scheme=u"", host=u"", port=None)
.asText()
.encode("ascii")
)
legacyRequest = self.legacyRequest(
isSecure=(uri.scheme == u"https"),
host=uri.host.encode("ascii"), port=uri.port, path=path,
)
request = HTTPRequestWrappingIRequest(request=legacyRequest)
# Work around for https://github.com/mahmoud/hyperlink/issues/5
def normalize(uri):
# type: (URL) -> URL
return uri.replace(path=(s for s in uri.path if s))
note("_request.uri: {!r}".format(path))
note("request.uri: {!r}".format(request.uri))
uriNormalized = normalize(uri)
requestURINormalized = normalize(request.uri)
# Needed because non-equal URLs can render as the same strings
def strURL(url):
# type: (URL) -> Text
return (
u"URL(scheme={url.scheme!r}, "
u"userinfo={url.userinfo!r}, "
u"host={url.host!r}, "
u"port={url.port!r}, "
u"path={url.path!r}, "
u"query={url.query!r}, "
u"fragment={url.fragment!r}, "
u"rooted={url.rooted})"
).format(url=url)
self.assertEqual(
requestURINormalized, uriNormalized,
"{} != {}".format(
strURL(requestURINormalized), strURL(uriNormalized)
)
)
def test_no_mask(image, template):
mask = np.ones_like(template)
result = wncc(image, template, mask)
result_nomask = wncc(image, template)
h.note(result)
h.note(result_nomask)
np.testing.assert_array_equal(result, result_nomask)
def test_fixed_image(image, templatemask):
template, mask = templatemask
result = wncc(image, template, mask)
result_with_fixed = wncc_prepare(image, template.shape)(template, mask)
h.note(result)
h.note(result_with_fixed)
np.testing.assert_array_equal(result, result_with_fixed)
def test_fft(arr_shape):
arr, shape = arr_shape
fftw = FFTW(shape, arr.dtype)
expected = np.fft.rfft2(arr, shape)
result = fftw(arr)
h.note(expected)
h.note(result)
assert np.allclose(expected, result, equal_nan=True)
def test_random(shape_image, shape_template):
image = np.random.rand(*shape_image)
template = np.random.rand(*shape_template)
mask = np.random.rand(*shape_template)
naive_result = _wncc_naive(image, template, mask)
result = wncc(image, template, mask)
h.note(naive_result)
h.note(result)
assert np.allclose(naive_result, result, atol=1e-2, equal_nan=True)
def query_is_valid(self):
assume(self.query_manager.fields)
fieldlist = [
fld.name
for fld
in self.query_manager.fields.values()
]
note('field list: {}'.format(list(fieldlist)))
note('sql display: {}'.format(self.query_manager.sql_display))
assert valid_sql(stmt=self.query_manager.sql_display)
def test_add_criteria(field, value):
random_op = random_operator(field)
qm = example_query_manager()
qm.add_criteria(
field=field
, value=value
, operator=random_op
)
sql = qm.sql_display
note('sql: {}'.format(sql))
valid_sql(qm.sql_display)
def acceptableerrors(*args):
"""Sometimes we know an operation we're about to perform might fail, and
we're OK with some of the failures. In those cases this may be used as a
context manager and will swallow expected failures, as identified by
substrings of the error message Mercurial emits."""
try:
yield
except subprocess.CalledProcessError as e:
if not any(a in e.output for a in args):
note(e.output)
raise
def test_scalar_to_vector(val):
def fun(x):
return np.array([x, x**2, x**3])
truth = np.array([[1., 2 * val, 3 * val**2]])
for method in ['multicomplex', 'complex', 'central', 'forward',
'backward']:
j0, info = nd.Jacobian(fun, method=method, full_output=True)(val)
error = np.abs(j0-truth)
note('method={}, error={}, error_est={}'.format(method, error,
info.error_estimate))
assert_allclose(j0, truth, rtol=1e-3, atol=1e-6)
def test_partition_many(self, parameters):
xs, left, right = parameters
pivot = xs[-1]
note('pivot: {0}'.format(pivot))
pivot_index = quick.partition(xs, 0, len(xs) - 1)
left, right = xs[:pivot_index], xs[pivot_index:]
note('partitions: {0}, {1}'.format(left, right))
if len(left) > 0:
assert max(left) <= pivot
if len(right) > 0:
assert min(right) >= pivot
def test_sparse_momentum_sgd(
self, inputs, momentum, nesterov, lr, data_strategy, gc, dc
):
w, grad, m = inputs
# Create an indexing array containing values which index into grad
indices = data_strategy.draw(
hu.tensor(
dtype=np.int64,
elements=st.sampled_from(np.arange(grad.shape[0]))
),
)
hypothesis.note('indices.shape: %s' % str(indices.shape))
# For now, the indices must be unique
hypothesis.assume(
np.array_equal(
np.unique(indices.flatten()), np.sort(indices.flatten())
)
)
# Sparsify grad
grad = grad[indices]
# Make momentum >= 0
m = np.abs(m)
# Convert lr to a numpy array
lr = np.asarray([lr], dtype=np.float32)
op = core.CreateOperator(
"SparseMomentumSGDUpdate", ["grad", "m", "lr", "param", "indices"],
["adjusted_grad", "m", "param"],
momentum=momentum,
nesterov=int(nesterov),
device_option=gc
)
# Reference
def momentum_sgd(grad, m, lr):
lr = lr[0]
if not nesterov:
adjusted_gradient = lr * grad + momentum * m
return (adjusted_gradient, adjusted_gradient)
else:
m_new = momentum * m + lr * grad
return ((1 + momentum) * m_new - momentum * m, m_new)
def sparse(grad, m, lr, param, i):
grad_new, m_new = momentum_sgd(grad, m[i], lr)
m[i] = m_new
param[i] -= grad_new
return (grad_new, m, param)
self.assertReferenceChecks(gc, op, [grad, m, lr, w, indices], sparse)
def test_correlate(arr_arr):
arr1, arr2 = arr_arr
c = Convolver(arr1.shape, arr2.shape, arr1.dtype)
c.add_array('A', arr1)
c.add_array('B', arr2)
expected = sp.signal.fftconvolve(arr1, arr2[::-1, ::-1])
result = c.correlate('A', 'B')
h.note(expected)
h.note(result)
assert np.allclose(expected, result, atol=1e-3, equal_nan=True)
def test_inverse_fft(arr_shape):
arr, shape = arr_shape
fft = np.fft.rfft2(arr, shape)
fftw = FFTW(shape, arr.dtype)
ifftw = fftw.get_inverse()
expected = np.fft.irfft2(fft, shape)
result = ifftw(fft)
h.note(expected)
h.note(result)
assert np.allclose(expected, result, equal_nan=True)
def test_gen_random(image, templatemask):
template, mask = templatemask
naive_result = _wncc_naive(image, template, mask)
result = wncc(image, template, mask)
h.note(naive_result)
h.note(result)
naive_finite = naive_result[np.isfinite(naive_result) & np.isfinite(result)]
res_finite = result[np.isfinite(naive_result) & np.isfinite(result)]
assert np.allclose(naive_finite, res_finite, atol=1e-2)
def test_row_wise_sparse_adagrad(self, inputs, lr, epsilon,
data_strategy, gc, dc):
param, grad = inputs
lr = np.array([lr], dtype=np.float32)
# Create a 1D row-wise average sum of squared gradients tensor.
momentum = data_strategy.draw(
hu.tensor1d(min_len=param.shape[0], max_len=param.shape[0],
elements=hu.elements_of_type(dtype=np.float32))
)
momentum = np.abs(momentum)
# Create an indexing array containing values which index into grad
indices = data_strategy.draw(
hu.tensor(dtype=np.int64,
elements=st.sampled_from(np.arange(grad.shape[0]))),
)
# Note that unlike SparseAdagrad, RowWiseSparseAdagrad uses a moment
# tensor that is strictly 1-dimensional and equal in length to the
# first dimension of the parameters, so indices must also be
# 1-dimensional.
indices = indices.flatten()
hypothesis.note('indices.shape: %s' % str(indices.shape))
# The indices must be unique
hypothesis.assume(np.array_equal(np.unique(indices), np.sort(indices)))
# Sparsify grad
grad = grad[indices]
op = core.CreateOperator(
"RowWiseSparseAdagrad",
["param", "momentum", "indices", "grad", "lr"],
["param", "momentum"],
epsilon=epsilon,
device_option=gc)
def ref_row_wise_sparse(param, momentum, indices, grad, lr):
param_out = np.copy(param)
momentum_out = np.copy(momentum)
for i, index in enumerate(indices):
param_out[index], momentum_out[index] = self.ref_row_wise_adagrad(
param[index], momentum[index], grad[i], lr, epsilon)
return (param_out, momentum_out)
self.assertReferenceChecks(
gc, op,
[param, momentum, indices, grad, lr],
ref_row_wise_sparse)
def test_example_message_round_trippable(data):
"""Ensure generated classes can be round-tripped into avro and back."""
# setup
parsed_schema = parse_into_types(schema=EXAMPLE_AVRO_MODEL_SCHEMA)
namespaces = populate_namespaces([parsed_schema])
# the actual intrinsic thing we care to test
module_contents, = (
contents
for path, contents in rendering.render_modules(namespaces).items()
if path.stem != '__init__')
# write module contents out to file, then, load file and generate an example object
tmp_path = Path('/tmp/example.py')
with tmp_path.open('w') as f:
f.write(module_contents)
spec = imp.spec_from_file_location('example', tmp_path)
example = imp.module_from_spec(spec)
sys.modules['example'] = example
spec.loader.exec_module(example)
original_example_avro_model = data.draw(
st.from_type(example.ExampleAvroModel))
tmp_path.unlink()
# clean up PBT-generated example model
def check_decimal(d: Optional[Decimal]):
if d is None:
return
assume(d.is_finite())
assume(
len(d.as_tuple().digits) < 21
) # if there are more digits than precision, round-tripping will truncate
assume(
d.as_tuple().exponent == -2
) # bug in avro python implementation; exponent _must_ match scale
check_decimal(original_example_avro_model.decimal)
check_decimal(original_example_avro_model.maybeDecimal)
assume(
original_example_avro_model.maybeInt is None or
-2_147_483_648 <= original_example_avro_model.maybeInt <= 2_147_483_647
) # 32-bit signed range is underspecified by python "int" type (which also supports longs)
assume(
-9_223_372_036_854_775_808 <=
original_example_avro_model.sampleInner.foo <=
9_223_372_036_854_775_808) # 64-bit signed range also underspecified
if isinstance(original_example_avro_model.sampleUnion,
example.ExampleAvroModel.RecordWithInt):
assume(-2_147_483_648 <= original_example_avro_model.sampleUnion.value
<= 2_147_483_647)
original_example_avro_model = original_example_avro_model._replace(
timestamp=datetime(2000,
1,
1,
0,
0,
0,
000000,
tzinfo=avro.timezones.utc)
) # set this manually, since it's underspecified by the `datetime.datetime` type annotation
# round trip through avro ser/deser
avro_parsed_schema = avro.schema.parse(
json.dumps(EXAMPLE_AVRO_MODEL_SCHEMA))
example_model_dict = to_avro_dict(original_example_avro_model)
note(example_model_dict)
buffer = io.BytesIO()
encoder = avro.io.BinaryEncoder(buffer)
datum_writer = avro.io.DatumWriter(avro_parsed_schema)
datum_writer.write(example_model_dict, encoder)
buffer.seek(0)
decoder = avro.io.BinaryDecoder(buffer)
datum_reader = avro.io.DatumReader(writers_schema=avro_parsed_schema,
readers_schema=avro_parsed_schema)
round_tripped_example_avro_model_dict = datum_reader.read(decoder)
note(round_tripped_example_avro_model_dict)
round_tripped_example_avro_model = from_avro_dict(
round_tripped_example_avro_model_dict,
record_type=example.ExampleAvroModel)
assert round_tripped_example_avro_model == original_example_avro_model
def testBijector(self, bijector_name, data):
tfp_hps.guitar_skip_if_matches('Tanh', bijector_name, 'b/144163991')
event_dim = data.draw(hps.integers(min_value=2, max_value=6))
bijector = data.draw(
bijectors(bijector_name=bijector_name,
event_dim=event_dim,
enable_vars=True))
self.evaluate(tf.group(*[v.initializer for v in bijector.variables]))
# Forward mapping: Check differentiation through forward mapping with
# respect to the input and parameter variables. Also check that any
# variables are not referenced overmuch.
# TODO(axch): Would be nice to get rid of all this shape inference logic and
# just rely on a notion of batch and event shape for bijectors, so we can
# pass those through `domain_tensors` and `codomain_tensors` and use
# `tensors_in_support`. However, `RationalQuadraticSpline` behaves weirdly
# somehow and I got confused.
codomain_event_shape = [event_dim] * bijector.inverse_min_event_ndims
codomain_event_shape = constrain_inverse_shape(bijector,
codomain_event_shape)
shp = bijector.inverse_event_shape(codomain_event_shape)
shp = tensorshape_util.concatenate(
data.draw(
tfp_hps.broadcast_compatible_shape(
shp[:shp.ndims - bijector.forward_min_event_ndims])),
shp[shp.ndims - bijector.forward_min_event_ndims:])
xs = tf.identity(data.draw(domain_tensors(bijector, shape=shp)),
name='xs')
wrt_vars = [xs] + [
v for v in bijector.trainable_variables if v.dtype.is_floating
]
with tf.GradientTape() as tape:
with tfp_hps.assert_no_excessive_var_usage(
'method `forward` of {}'.format(bijector)):
tape.watch(wrt_vars)
# TODO(b/73073515): Fix graph mode gradients with bijector caching.
ys = bijector.forward(xs + 0)
grads = tape.gradient(ys, wrt_vars)
assert_no_none_grad(bijector, 'forward', wrt_vars, grads)
# For scalar bijectors, verify correctness of the _is_increasing method.
if (bijector.forward_min_event_ndims == 0
and bijector.inverse_min_event_ndims == 0):
dydx = grads[0]
hp.note('dydx: {}'.format(dydx))
isfinite = tf.math.is_finite(dydx)
incr_or_slope_eq0 = bijector._internal_is_increasing() | tf.equal(
dydx, 0) # pylint: disable=protected-access
self.assertAllEqual(
isfinite & incr_or_slope_eq0,
isfinite & (dydx >= 0) | tf.zeros_like(incr_or_slope_eq0))
# FLDJ: Check differentiation through forward log det jacobian with
# respect to the input and parameter variables. Also check that any
# variables are not referenced overmuch.
event_ndims = data.draw(
hps.integers(min_value=bijector.forward_min_event_ndims,
max_value=xs.shape.ndims))
with tf.GradientTape() as tape:
max_permitted = _ldj_tensor_conversions_allowed(bijector,
is_forward=True)
with tfp_hps.assert_no_excessive_var_usage(
'method `forward_log_det_jacobian` of {}'.format(bijector),
max_permissible=max_permitted):
tape.watch(wrt_vars)
# TODO(b/73073515): Fix graph mode gradients with bijector caching.
ldj = bijector.forward_log_det_jacobian(
xs + 0, event_ndims=event_ndims)
grads = tape.gradient(ldj, wrt_vars)
assert_no_none_grad(bijector, 'forward_log_det_jacobian', wrt_vars,
grads)
# Inverse mapping: Check differentiation through inverse mapping with
# respect to the codomain "input" and parameter variables. Also check that
# any variables are not referenced overmuch.
domain_event_shape = [event_dim] * bijector.forward_min_event_ndims
domain_event_shape = constrain_forward_shape(bijector,
domain_event_shape)
shp = bijector.forward_event_shape(domain_event_shape)
shp = tensorshape_util.concatenate(
data.draw(
tfp_hps.broadcast_compatible_shape(
shp[:shp.ndims - bijector.inverse_min_event_ndims])),
shp[shp.ndims - bijector.inverse_min_event_ndims:])
ys = tf.identity(data.draw(codomain_tensors(bijector, shape=shp)),
name='ys')
wrt_vars = [ys] + [
v for v in bijector.trainable_variables if v.dtype.is_floating
]
with tf.GradientTape() as tape:
with tfp_hps.assert_no_excessive_var_usage(
'method `inverse` of {}'.format(bijector)):
tape.watch(wrt_vars)
# TODO(b/73073515): Fix graph mode gradients with bijector caching.
xs = bijector.inverse(ys + 0)
grads = tape.gradient(xs, wrt_vars)
assert_no_none_grad(bijector, 'inverse', wrt_vars, grads)
# ILDJ: Check differentiation through inverse log det jacobian with respect
# to the codomain "input" and parameter variables. Also check that any
# variables are not referenced overmuch.
event_ndims = data.draw(
hps.integers(min_value=bijector.inverse_min_event_ndims,
max_value=ys.shape.ndims))
with tf.GradientTape() as tape:
max_permitted = _ldj_tensor_conversions_allowed(bijector,
is_forward=False)
with tfp_hps.assert_no_excessive_var_usage(
'method `inverse_log_det_jacobian` of {}'.format(bijector),
max_permissible=max_permitted):
tape.watch(wrt_vars)
# TODO(b/73073515): Fix graph mode gradients with bijector caching.
ldj = bijector.inverse_log_det_jacobian(
ys + 0, event_ndims=event_ndims)
grads = tape.gradient(ldj, wrt_vars)
assert_no_none_grad(bijector, 'inverse_log_det_jacobian', wrt_vars,
grads)
def test_shuffle_is_noop(self, xss, rnd):
yss = list(xss)
rnd.shuffle(yss)
note("Shuffle: {0}".format(yss))
self.assertEqual(xss, yss)
def test(xs):
note('Hi there')
if sum(xs) <= 100:
raise ValueError()
def test(i):
note('Hi there')
def _accept_all(self, *commands: Command) -> None:
for command in commands:
note(str(command))
self.goaltree.accept_all(*commands)
def independents(draw,
batch_shape=None,
event_dim=None,
enable_vars=False,
depth=None):
"""Strategy for drawing `Independent` distributions.
The underlying distribution is drawn from the `distributions` strategy.
Args:
draw: Hypothesis strategy sampler supplied by `@hps.composite`.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
`Independent` distribution. Note that the underlying distribution will in
general have a higher-rank batch shape, to make room for reinterpreting
some of those dimensions as the `Independent`'s event. Hypothesis will
pick one if omitted.
event_dim: Optional Python int giving the size of each of the underlying
distribution's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all Tensors, never Variables or DeferredTensor.
depth: Python `int` giving maximum nesting depth of compound Distributions.
Returns:
dists: A strategy for drawing `Independent` distributions with the specified
`batch_shape` (or an arbitrary one if omitted).
"""
if depth is None:
depth = draw(depths())
reinterpreted_batch_ndims = draw(hps.integers(min_value=0, max_value=2))
if batch_shape is None:
batch_shape = draw(tfp_hps.shapes(min_ndims=reinterpreted_batch_ndims))
else: # This independent adds some batch dims to its underlying distribution.
batch_shape = tensorshape_util.concatenate(
batch_shape,
draw(
tfp_hps.shapes(min_ndims=reinterpreted_batch_ndims,
max_ndims=reinterpreted_batch_ndims)))
underlying = draw(
distributions(batch_shape=batch_shape,
event_dim=event_dim,
enable_vars=enable_vars,
depth=depth - 1))
hp.note('Forming Independent with underlying dist {}; '
'parameters {}; reinterpreted_batch_ndims {}'.format(
underlying, params_used(underlying),
reinterpreted_batch_ndims))
result_dist = tfd.Independent(
underlying,
reinterpreted_batch_ndims=reinterpreted_batch_ndims,
validate_args=True)
expected_shape = batch_shape[:len(batch_shape) - reinterpreted_batch_ndims]
if expected_shape != result_dist.batch_shape:
msg = ('Independent strategy generated a bad batch shape '
'for {}, should have been {}.').format(result_dist,
expected_shape)
raise AssertionError(msg)
return result_dist
def check_message(orig, orig_typedef, new, new_typedef):
for field_number in set(orig.keys()) | set(new.keys()):
# verify all fields are there
assert field_number in orig
assert field_number in orig_typedef
assert field_number in new
assert field_number in new_typedef
orig_values = orig[field_number]
new_values = new[field_number]
orig_type = orig_typedef[field_number]["type"]
new_type = new_typedef[field_number]["type"]
note("Parsing field# %s" % field_number)
note("orig_values: %r" % orig_values)
note("new_values: %r" % new_values)
note("orig_type: %s" % orig_type)
note("new_type: %s" % new_type)
# Fields might be lists. Just convert everything to a list
if not isinstance(orig_values, list):
orig_values = [orig_values]
assert not isinstance(new_values, list)
new_values = [new_values]
# if the types don't match, then try to convert them
if new_type == "message" and orig_type in ["bytes", "string"]:
# if the type is a message, we want to convert the orig type to a message
# this isn't ideal, we'll be using the unintended type, but
# best way to compare. Re-encoding a message to binary might
# not keep the field order
new_field_typedef = new_typedef[field_number][
"message_typedef"]
for i, orig_value in enumerate(orig_values):
if orig_type == "bytes":
(
orig_values[i],
orig_field_typedef,
_,
) = length_delim.decode_lendelim_message(
length_delim.encode_bytes(orig_value),
config,
new_field_typedef,
)
else:
# string value
(
orig_values[i],
orig_field_typedef,
_,
) = length_delim.decode_lendelim_message(
length_delim.encode_string(orig_value),
config,
new_field_typedef,
)
orig_typedef[field_number][
"message_typedef"] = orig_field_typedef
orig_type = "message"
if new_type == "string" and orig_type == "bytes":
# our bytes were accidently valid string
new_type = "bytes"
for i, new_value in enumerate(new_values):
new_values[i], _ = length_delim.decode_bytes(
length_delim.encode_string(new_value), 0)
# sort the lists with special handling for dicts
orig_values.sort(
key=lambda x: x if not isinstance(x, dict) else x.items())
new_values.sort(
key=lambda x: x if not isinstance(x, dict) else x.items())
for orig_value, new_value in zip(orig_values, new_values):
if orig_type == "message":
check_message(
orig_value,
orig_typedef[field_number]["message_typedef"],
new_value,
new_typedef[field_number]["message_typedef"],
)
else:
assert orig_value == new_value
def update_short(self, buf):
note("update_short: %s" % len(buf))
self._update(buf)
def cant_serialize(media_type: str) -> NoReturn: # type: ignore
"""Reject the current example if we don't know how to send this data to the application."""
event_text = f"Can't serialize data to `{media_type}`."
note(f"{event_text} {SERIALIZERS_SUGGESTION_MESSAGE}")
event(event_text)
reject() # type: ignore
def batch_reshapes(draw,
batch_shape=None,
event_dim=None,
enable_vars=False,
depth=None,
eligibility_filter=lambda name: True,
validate_args=True):
"""Strategy for drawing `BatchReshape` distributions.
The underlying distribution is drawn from the `distributions` strategy.
Args:
draw: Hypothesis strategy sampler supplied by `@hps.composite`.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
`BatchReshape` distribution. Note that the underlying distribution will
in general have a different batch shape, to make the reshaping
non-trivial. Hypothesis will pick one if omitted.
event_dim: Optional Python int giving the size of each of the underlying
distribution's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all `tf.Tensor`s and not {`tf.Variable`, `tfp.util.DeferredTensor`
`tfp.util.TransformedVariable`}
depth: Python `int` giving maximum nesting depth of compound Distributions.
eligibility_filter: Optional Python callable. Blacklists some Distribution
class names so they will not be drawn.
validate_args: Python `bool`; whether to enable runtime assertions.
Returns:
dists: A strategy for drawing `BatchReshape` distributions with the
specified `batch_shape` (or an arbitrary one if omitted).
"""
if depth is None:
depth = draw(depths())
if batch_shape is None:
batch_shape = draw(tfp_hps.shapes(min_ndims=1, max_side=4))
# TODO(b/142135119): Wanted to draw general input and output shapes like the
# following, but Hypothesis complained about filtering out too many things.
# underlying_batch_shape = draw(tfp_hps.shapes(min_ndims=1))
# hp.assume(
# batch_shape.num_elements() == underlying_batch_shape.num_elements())
underlying_batch_shape = [tf.TensorShape(batch_shape).num_elements()]
underlying = draw(
distributions(batch_shape=underlying_batch_shape,
event_dim=event_dim,
enable_vars=enable_vars,
depth=depth - 1,
eligibility_filter=eligibility_filter,
validate_args=validate_args))
hp.note('Forming BatchReshape with underlying dist {}; '
'parameters {}; batch_shape {}'.format(underlying,
params_used(underlying),
batch_shape))
result_dist = tfd.BatchReshape(underlying,
batch_shape=batch_shape,
validate_args=True)
return result_dist
def _test_slicing(self, data, dist):
strm = test_util.test_seed_stream()
batch_shape = dist.batch_shape
slices = data.draw(dhps.valid_slices(batch_shape))
slice_str = 'dist[{}]'.format(', '.join(dhps.stringify_slices(slices)))
# Make sure the slice string appears in Hypothesis' attempted example log
hp.note('Using slice ' + slice_str)
if not slices: # Nothing further to check.
return
sliced_zeros = np.zeros(batch_shape)[slices]
sliced_dist = dist[slices]
hp.note('Using sliced distribution {}.'.format(sliced_dist))
# Check that slicing modifies batch shape as expected.
self.assertAllEqual(sliced_zeros.shape, sliced_dist.batch_shape)
if not sliced_zeros.size:
# TODO(b/128924708): Fix distributions that fail on degenerate empty
# shapes, e.g. Multinomial, DirichletMultinomial, ...
return
# Check that sampling of sliced distributions executes.
with tfp_hps.no_tf_rank_errors():
samples = self.evaluate(dist.sample(seed=strm()))
sliced_dist_samples = self.evaluate(
sliced_dist.sample(seed=strm()))
# Come up with the slices for samples (which must also include event dims).
sample_slices = (tuple(slices) if isinstance(
slices, collections.Sequence) else (slices, ))
if Ellipsis not in sample_slices:
sample_slices += (Ellipsis, )
sample_slices += tuple([slice(None)] *
tensorshape_util.rank(dist.event_shape))
sliced_samples = samples[sample_slices]
# Report sub-sliced samples (on which we compare log_prob) to hypothesis.
hp.note('Sample(s) for testing log_prob ' + str(sliced_samples))
# Check that sampling a sliced distribution produces the same shape as
# slicing the samples from the original.
self.assertAllEqual(sliced_samples.shape, sliced_dist_samples.shape)
# Check that a sliced distribution can compute the log_prob of its own
# samples (up to numerical validation errors).
with tfp_hps.no_tf_rank_errors():
try:
lp = self.evaluate(dist.log_prob(samples))
except tf.errors.InvalidArgumentError:
# TODO(b/129271256): d.log_prob(d.sample()) should not fail
# validate_args checks.
# We only tolerate this case for the non-sliced dist.
return
sliced_lp = self.evaluate(sliced_dist.log_prob(sliced_samples))
# Check that the sliced dist's log_prob agrees with slicing the original's
# log_prob.
# This `hp.assume` is suppressing array sizes that cause the sliced and
# non-sliced distribution to follow different Eigen code paths. Those
# different code paths lead to arbitrarily large variations in the results
# at parameter settings that Hypothesis is all too good at finding. Since
# the purpose of this test is just to check that we got slicing right, those
# discrepancies are a distraction.
# TODO(b/140229057): Remove this `hp.assume`, if and when Eigen's numerics
# become index-independent.
all_packetized = (_all_packetized(dist)
and _all_packetized(sliced_dist)
and _all_packetized(samples)
and _all_packetized(sliced_samples))
hp.note('Packetization check {}'.format(all_packetized))
all_non_packetized = (_all_non_packetized(dist)
and _all_non_packetized(sliced_dist)
and _all_non_packetized(samples)
and _all_non_packetized(sliced_samples))
hp.note('Non-packetization check {}'.format(all_non_packetized))
hp.assume(all_packetized or all_non_packetized)
self.assertAllClose(lp[slices], sliced_lp, atol=1e-5, rtol=1e-5)
def _all_ok(thing, one_ok):
hp.note('Testing packetization of {}.'.format(thing))
for s in _all_shapes(thing):
if not one_ok(s):
return False
return True
def testDistribution(self, dist_name, data):
seed = test_util.test_seed()
# Explicitly draw event_dim here to avoid relying on _params_event_ndims
# later, so this test can support distributions that do not implement the
# slicing protocol.
event_dim = data.draw(hps.integers(min_value=2, max_value=6))
dist = data.draw(
dhps.distributions(dist_name=dist_name,
event_dim=event_dim,
enable_vars=True))
batch_shape = dist.batch_shape
batch_shape2 = data.draw(
tfp_hps.broadcast_compatible_shape(batch_shape))
dist2 = data.draw(
dhps.distributions(dist_name=dist_name,
batch_shape=batch_shape2,
event_dim=event_dim,
enable_vars=True))
self.evaluate([var.initializer for var in dist.variables])
# Check that the distribution passes Variables through to the accessor
# properties (without converting them to Tensor or anything like that).
for k, v in six.iteritems(dist.parameters):
if not tensor_util.is_ref(v):
continue
self.assertIs(getattr(dist, k), v)
# Check that standard statistics do not read distribution parameters more
# than twice (once in the stat itself and up to once in any validation
# assertions).
max_permissible = 2 + extra_tensor_conversions_allowed(dist)
for stat in sorted(
data.draw(
hps.sets(hps.one_of(
map(hps.just, [
'covariance', 'entropy', 'mean', 'mode', 'stddev',
'variance'
])),
min_size=3,
max_size=3))):
hp.note('Testing excessive var usage in {}.{}'.format(
dist_name, stat))
try:
with tfp_hps.assert_no_excessive_var_usage(
'statistic `{}` of `{}`'.format(stat, dist),
max_permissible=max_permissible):
getattr(dist, stat)()
except NotImplementedError:
pass
# Check that `sample` doesn't read distribution parameters more than twice,
# and that it produces non-None gradients (if the distribution is fully
# reparameterized).
with tf.GradientTape() as tape:
# TDs do bijector assertions twice (once by distribution.sample, and once
# by bijector.forward).
max_permissible = 2 + extra_tensor_conversions_allowed(dist)
with tfp_hps.assert_no_excessive_var_usage(
'method `sample` of `{}`'.format(dist),
max_permissible=max_permissible):
sample = dist.sample(seed=seed)
if dist.reparameterization_type == tfd.FULLY_REPARAMETERIZED:
grads = tape.gradient(sample, dist.variables)
for grad, var in zip(grads, dist.variables):
var_name = var.name.rstrip('_0123456789:')
if var_name in NO_SAMPLE_PARAM_GRADS.get(dist_name, ()):
continue
if grad is None:
raise AssertionError(
'Missing sample -> {} grad for distribution {}'.format(
var_name, dist_name))
# Turn off validations, since TODO(b/129271256) log_prob can choke on dist's
# own samples. Also, to relax conversion counts for KL (might do >2 w/
# validate_args).
dist = dist.copy(validate_args=False)
dist2 = dist2.copy(validate_args=False)
# Test that KL divergence reads distribution parameters at most once, and
# that is produces non-None gradients.
try:
for d1, d2 in (dist, dist2), (dist2, dist):
with tf.GradientTape() as tape:
with tfp_hps.assert_no_excessive_var_usage(
'`kl_divergence` of (`{}` (vars {}), `{}` (vars {}))'
.format(d1, d1.variables, d2, d2.variables),
max_permissible=1
): # No validation => 1 convert per var.
kl = d1.kl_divergence(d2)
wrt_vars = list(d1.variables) + list(d2.variables)
grads = tape.gradient(kl, wrt_vars)
for grad, var in zip(grads, wrt_vars):
if grad is None and dist_name not in NO_KL_PARAM_GRADS:
raise AssertionError(
'Missing KL({} || {}) -> {} grad:\n' # pylint: disable=duplicate-string-formatting-argument
'{} vars: {}\n{} vars: {}'.format(
d1, d2, var, d1, d1.variables, d2,
d2.variables))
except NotImplementedError:
pass
# Test that log_prob produces non-None gradients, except for distributions
# on the NO_LOG_PROB_PARAM_GRADS blacklist.
if dist_name not in NO_LOG_PROB_PARAM_GRADS:
with tf.GradientTape() as tape:
lp = dist.log_prob(tf.stop_gradient(sample))
grads = tape.gradient(lp, dist.variables)
for grad, var in zip(grads, dist.variables):
if grad is None:
raise AssertionError(
'Missing log_prob -> {} grad for distribution {}'.
format(var, dist_name))
# Test that all forms of probability evaluation avoid reading distribution
# parameters more than once.
for evaluative in sorted(
data.draw(
hps.sets(hps.one_of(
map(hps.just, [
'log_prob', 'prob', 'log_cdf', 'cdf',
'log_survival_function', 'survival_function'
])),
min_size=3,
max_size=3))):
hp.note('Testing excessive var usage in {}.{}'.format(
dist_name, evaluative))
try:
# No validation => 1 convert. But for TD we allow 2:
# dist.log_prob(bijector.inverse(samp)) + bijector.ildj(samp)
max_permissible = 2 + extra_tensor_conversions_allowed(dist)
with tfp_hps.assert_no_excessive_var_usage(
'evaluative `{}` of `{}`'.format(evaluative, dist),
max_permissible=max_permissible):
getattr(dist, evaluative)(sample)
except NotImplementedError:
pass
def _accept(self, command: Command) -> None:
note(str(command))
self.goaltree.accept(command)
def quantized_distributions(draw,
batch_shape=None,
event_dim=None,
enable_vars=False,
eligibility_filter=lambda name: True,
validate_args=True):
"""Strategy for drawing `QuantizedDistribution`s.
The underlying distribution is drawn from the `base_distributions` strategy.
Args:
draw: Hypothesis strategy sampler supplied by `@hps.composite`.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
`QuantizedDistribution`. Hypothesis will pick a `batch_shape` if omitted.
event_dim: Optional Python int giving the size of each of the underlying
distribution's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all Tensors, never Variables or DeferredTensor.
eligibility_filter: Optional Python callable. Blacklists some Distribution
class names so they will not be drawn.
validate_args: Python `bool`; whether to enable runtime assertions.
Returns:
dists: A strategy for drawing `QuantizedDistribution`s with the specified
`batch_shape` (or an arbitrary one if omitted).
"""
if batch_shape is None:
batch_shape = draw(tfp_hps.shapes())
low_quantile = draw(
hps.one_of(hps.just(None), hps.floats(min_value=0.01, max_value=0.7)))
high_quantile = draw(
hps.one_of(hps.just(None), hps.floats(min_value=0.3, max_value=.99)))
def ok(name):
return eligibility_filter(name) and name in QUANTIZED_BASE_DISTS
underlyings = base_distributions(
batch_shape=batch_shape,
event_dim=event_dim,
enable_vars=enable_vars,
eligibility_filter=ok,
)
underlying = draw(underlyings)
if high_quantile is not None:
high_quantile = tf.convert_to_tensor(high_quantile,
dtype=underlying.dtype)
if low_quantile is not None:
low_quantile = tf.convert_to_tensor(low_quantile,
dtype=underlying.dtype)
if high_quantile is not None:
high_quantile = ensure_high_gt_low(low_quantile, high_quantile)
hp.note('Drawing QuantizedDistribution with underlying distribution'
' {}'.format(underlying))
try:
low = None if low_quantile is None else underlying.quantile(
low_quantile)
high = None if high_quantile is None else underlying.quantile(
high_quantile)
except NotImplementedError:
# The following code makes ReproducibilityTest flaky in graph mode (but not
# eager). Failures are due either to partial mismatch in the samples in
# ReproducibilityTest or to `low` and/or `high` being NaN. For now, to avoid
# this, we set `low` and `high` to `None` for distributions not implementing
# `quantile`.
# seed = test_util.test_seed(hardcoded_seed=123)
# low = (None if low_quantile is None
# else underlying.sample(low_quantile.shape, seed=seed))
# high = (None if high_quantile is None else
# underlying.sample(high_quantile.shape, seed=seed))
low = None
high = None
# Ensure that `low` and `high` are ints contained in distribution support
# and span at least a few bins.
if high is not None:
high = tf.clip_by_value(high, -2**23, 2**23)
high = tf.math.ceil(high + 5.)
if low is not None:
low = tf.clip_by_value(low, -2**23, 2**23)
low = tf.math.ceil(low)
result_dist = tfd.QuantizedDistribution(distribution=underlying,
low=low,
high=high,
validate_args=validate_args)
return result_dist
def kernel_input(
draw,
batch_shape,
example_dim=None,
example_ndims=None,
feature_dim=None,
feature_ndims=None,
enable_vars=False,
name=None):
"""Strategy for drawing arbitrary Kernel input.
In order to avoid duplicates (or even numerically near-duplicates), we
generate inputs on a grid. We let hypothesis generate the number of grid
points and distance between grid points, within some reasonable pre-defined
ranges. The result will be a batch of example sets, within which each set of
examples has no duplicates (but no such duplication avoidance is applied
accross batches).
Args:
draw: Hypothesis function supplied by `@hps.composite`.
batch_shape: `TensorShape`. The batch shape of the resulting
kernel input.
example_dim: Optional Python int giving the size of each example dimension.
If omitted, Hypothesis will choose one.
example_ndims: Optional Python int giving the number of example dimensions
of the input. If omitted, Hypothesis will choose one.
feature_dim: Optional Python int giving the size of each feature dimension.
If omitted, Hypothesis will choose one.
feature_ndims: Optional Python int stating the number of feature dimensions
inputs will have. If omitted, Hypothesis will choose one.
enable_vars: If `False`, the returned parameters are all Tensors, never
Variables or DeferredTensor.
name: Name to give the variable.
Returns:
kernel_input: A strategy for drawing kernel_input with the prescribed shape
(or an arbitrary one if omitted).
"""
if example_ndims is None:
example_ndims = draw(hps.integers(min_value=1, max_value=2))
if example_dim is None:
example_dim = draw(hps.integers(min_value=2, max_value=4))
if feature_ndims is None:
feature_ndims = draw(hps.integers(min_value=1, max_value=2))
if feature_dim is None:
feature_dim = draw(hps.integers(min_value=2, max_value=4))
batch_shape = tensorshape_util.as_list(batch_shape)
example_shape = [example_dim] * example_ndims
feature_shape = [feature_dim] * feature_ndims
batch_size = int(np.prod(batch_shape))
example_size = example_dim ** example_ndims
feature_size = feature_dim ** feature_ndims
# We would like each batch of examples to be unique, to avoid computing kernel
# matrices that are semi-definite. hypothesis.extra.numpy.arrays doesn't have
# a sense of tolerance, so we need to do some extra work to get points
# sufficiently far from each other.
grid_size = draw(hps.integers(min_value=10, max_value=100))
grid_spacing = draw(hps.floats(min_value=1e-2, max_value=2))
hp.note('Grid size {} and spacing {}'.format(grid_size, grid_spacing))
def _grid_indices_to_values(grid_indices):
return (grid_spacing *
(np.array(grid_indices, dtype=np.float64) - np.float64(grid_size)))
# We'll construct the result by stacking onto flattened batch, example and
# feature dims, then reshape to unflatten at the end.
result = np.zeros([0, example_size, feature_size])
for _ in range(batch_size):
seen = set()
index_array_strategy = hps.tuples(
*([hps.integers(0, grid_size + 1)] * feature_size)).filter(
lambda x, seen=seen: x not in seen) # Default param to sate pylint.
examples = np.zeros([1, 0, feature_size])
for _ in range(example_size):
feature_grid_locations = draw(index_array_strategy)
seen.add(feature_grid_locations)
example = _grid_indices_to_values(feature_grid_locations)
example = example[np.newaxis, np.newaxis, ...]
examples = np.concatenate([examples, example], axis=1)
result = np.concatenate([result, examples], axis=0)
result = np.reshape(result, batch_shape + example_shape + feature_shape)
if enable_vars and draw(hps.booleans()):
result = tf.Variable(result, name=name)
if draw(hps.booleans()):
result = tfp_hps.defer_and_count_usage(result)
return result
def test_shuffle_is_noop(xss, rnd):
yss = list(xss)
rnd.shuffle(yss)
note("Shuffle: {0}".format(yss))
assert xss == yss
def base_kernels(
draw,
kernel_name=None,
batch_shape=None,
event_dim=None,
feature_dim=None,
feature_ndims=None,
enable_vars=False):
"""Strategy for drawing kernels that don't depend on other kernels.
Args:
draw: Hypothesis function supplied by `@hps.composite`.
kernel_name: Optional Python `str`. If given, the produced kernels
will all have this type.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
Kernel. Hypothesis will pick a batch shape if omitted.
event_dim: Optional Python int giving the size of each of the
kernel's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
feature_dim: Optional Python int giving the size of each feature dimension.
If omitted, Hypothesis will choose one.
feature_ndims: Optional Python int stating the number of feature dimensions
inputs will have. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all Tensors, never Variables or DeferredTensor.
Returns:
kernels: A strategy for drawing Kernels with the specified `batch_shape`
(or an arbitrary one if omitted).
kernel_variable_names: List of kernel parameters that are variables.
"""
if kernel_name is None:
kernel_name = draw(hps.sampled_from(sorted(INSTANTIABLE_BASE_KERNELS)))
if batch_shape is None:
batch_shape = draw(tfp_hps.shapes())
if event_dim is None:
event_dim = draw(hps.integers(min_value=2, max_value=6))
if feature_dim is None:
feature_dim = draw(hps.integers(min_value=2, max_value=6))
if feature_ndims is None:
feature_ndims = draw(hps.integers(min_value=2, max_value=6))
kernel_params = draw(
broadcasting_params(kernel_name, batch_shape, event_dim=event_dim,
enable_vars=enable_vars))
kernel_variable_names = [
k for k in kernel_params if tensor_util.is_ref(kernel_params[k])]
hp.note('Forming kernel {} with feature_ndims {} and constrained parameters '
'{}'.format(kernel_name, feature_ndims, kernel_params))
ctor = getattr(tfpk, kernel_name)
result_kernel = ctor(
validate_args=True,
feature_ndims=feature_ndims,
**kernel_params)
if batch_shape != result_kernel.batch_shape:
msg = ('Kernel strategy generated a bad batch shape '
'for {}, should have been {}.').format(result_kernel, batch_shape)
raise AssertionError(msg)
return result_kernel, kernel_variable_names
def update_long(self, length, random):
buf = bytes((random.getrandbits(8) for _ in range(length)))
note("update_long: %s" % buf)
self._update(buf)
def schur_complements(
draw,
batch_shape=None,
event_dim=None,
feature_dim=None,
feature_ndims=None,
enable_vars=None,
depth=None):
"""Strategy for drawing `SchurComplement` kernels.
The underlying kernel is drawn from the `kernels` strategy.
Args:
draw: Hypothesis strategy sampler supplied by `@hps.composite`.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
Kernel. Hypothesis will pick a batch shape if omitted.
event_dim: Optional Python int giving the size of each of the
kernel's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
feature_dim: Optional Python int giving the size of each feature dimension.
If omitted, Hypothesis will choose one.
feature_ndims: Optional Python int stating the number of feature dimensions
inputs will have. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all Tensors, never Variables or DeferredTensor.
depth: Python `int` giving maximum nesting depth of compound kernel.
Returns:
kernels: A strategy for drawing `SchurComplement` kernels with the specified
`batch_shape` (or an arbitrary one if omitted).
"""
if depth is None:
depth = draw(depths())
if batch_shape is None:
batch_shape = draw(tfp_hps.shapes())
if event_dim is None:
event_dim = draw(hps.integers(min_value=2, max_value=6))
if feature_dim is None:
feature_dim = draw(hps.integers(min_value=2, max_value=6))
if feature_ndims is None:
feature_ndims = draw(hps.integers(min_value=2, max_value=6))
base_kernel, kernel_variable_names = draw(kernels(
batch_shape=batch_shape,
event_dim=event_dim,
feature_dim=feature_dim,
feature_ndims=feature_ndims,
enable_vars=False,
depth=depth-1))
# SchurComplement requires the inputs to have one example dimension.
fixed_inputs = draw(kernel_input(
batch_shape=batch_shape,
example_ndims=1,
feature_dim=feature_dim,
feature_ndims=feature_ndims))
# Positive shift to ensure the divisor matrix is PD.
diag_shift = np.float64(draw(hpnp.arrays(
dtype=np.float64,
shape=tensorshape_util.as_list(batch_shape),
elements=hps.floats(1, 100, allow_nan=False, allow_infinity=False))))
hp.note('Forming SchurComplement kernel with fixed_inputs: {} '
'and diag_shift: {}'.format(fixed_inputs, diag_shift))
schur_complement_params = {
'fixed_inputs': fixed_inputs,
'diag_shift': diag_shift
}
for param_name in schur_complement_params:
if enable_vars and draw(hps.booleans()):
kernel_variable_names.append(param_name)
schur_complement_params[param_name] = tf.Variable(
schur_complement_params[param_name], name=param_name)
if draw(hps.booleans()):
schur_complement_params[param_name] = tfp_hps.defer_and_count_usage(
schur_complement_params[param_name])
result_kernel = tfp.math.psd_kernels.SchurComplement(
base_kernel=base_kernel,
fixed_inputs=schur_complement_params['fixed_inputs'],
diag_shift=schur_complement_params['diag_shift'],
validate_args=True)
return result_kernel, kernel_variable_names
def transformed_distributions(draw,
batch_shape=None,
event_dim=None,
enable_vars=False,
depth=None):
"""Strategy for drawing `TransformedDistribution`s.
The transforming bijector is drawn from the
`bijectors.hypothesis_testlib.unconstrained_bijectors` strategy.
The underlying distribution is drawn from the `distributions` strategy, except
that it must be compatible with the bijector according to
`bijectors.hypothesis_testlib.distribution_filter_for` (these generally check
that vector bijectors are not combined with scalar distributions, etc).
Args:
draw: Hypothesis strategy sampler supplied by `@hps.composite`.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
`TransformedDistribution`. The underlying distribution will sometimes
have the same `batch_shape`, and sometimes have scalar batch shape.
Hypothesis will pick a `batch_shape` if omitted.
event_dim: Optional Python int giving the size of each of the underlying
distribution's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all Tensors, never Variables or DeferredTensor.
depth: Python `int` giving maximum nesting depth of compound Distributions.
Returns:
dists: A strategy for drawing `TransformedDistribution`s with the specified
`batch_shape` (or an arbitrary one if omitted).
"""
if depth is None:
depth = draw(depths())
bijector = draw(bijector_hps.unconstrained_bijectors())
hp.note(
'Drawing TransformedDistribution with bijector {}'.format(bijector))
if batch_shape is None:
batch_shape = draw(tfp_hps.shapes())
underlying_batch_shape = batch_shape
batch_shape_arg = None
if draw(hps.booleans()):
# Use batch_shape overrides.
underlying_batch_shape = tf.TensorShape([]) # scalar underlying batch
batch_shape_arg = batch_shape
underlyings = distributions(
batch_shape=underlying_batch_shape,
event_dim=event_dim,
enable_vars=enable_vars,
depth=depth - 1).filter(bijector_hps.distribution_filter_for(bijector))
to_transform = draw(underlyings)
hp.note('Forming TransformedDistribution with '
'underlying distribution {}; parameters {}'.format(
to_transform, params_used(to_transform)))
# TODO(bjp): Add test coverage for `event_shape` argument of
# `TransformedDistribution`.
result_dist = tfd.TransformedDistribution(bijector=bijector,
distribution=to_transform,
batch_shape=batch_shape_arg,
validate_args=True)
if batch_shape != result_dist.batch_shape:
msg = ('TransformedDistribution strategy generated a bad batch shape '
'for {}, should have been {}.').format(result_dist, batch_shape)
raise AssertionError(msg)
return result_dist
def feature_scaleds(
draw,
batch_shape=None,
event_dim=None,
feature_dim=None,
feature_ndims=None,
enable_vars=None,
depth=None):
"""Strategy for drawing `FeatureScaled` kernels.
The underlying kernel is drawn from the `kernels` strategy.
Args:
draw: Hypothesis strategy sampler supplied by `@hps.composite`.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
Kernel. Hypothesis will pick a batch shape if omitted.
event_dim: Optional Python int giving the size of each of the
kernel's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
feature_dim: Optional Python int giving the size of each feature dimension.
If omitted, Hypothesis will choose one.
feature_ndims: Optional Python int stating the number of feature dimensions
inputs will have. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all Tensors, never Variables or DeferredTensor.
depth: Python `int` giving maximum nesting depth of compound kernel.
Returns:
kernels: A strategy for drawing `FeatureScaled` kernels with the specified
`batch_shape` (or an arbitrary one if omitted).
"""
if depth is None:
depth = draw(depths())
if batch_shape is None:
batch_shape = draw(tfp_hps.shapes())
if event_dim is None:
event_dim = draw(hps.integers(min_value=2, max_value=6))
if feature_dim is None:
feature_dim = draw(hps.integers(min_value=2, max_value=6))
if feature_ndims is None:
feature_ndims = draw(hps.integers(min_value=2, max_value=6))
base_kernel, kernel_variable_names = draw(kernels(
batch_shape=batch_shape,
event_dim=event_dim,
feature_dim=feature_dim,
feature_ndims=feature_ndims,
enable_vars=False,
depth=depth-1))
scale_diag = tfp_hps.softplus_plus_eps()(draw(kernel_input(
batch_shape=batch_shape,
example_ndims=0,
feature_dim=feature_dim,
feature_ndims=feature_ndims)))
hp.note('Forming FeatureScaled kernel with scale_diag: {} '.format(
scale_diag))
if enable_vars and draw(hps.booleans()):
kernel_variable_names.append('scale_diag')
scale_diag = tf.Variable(scale_diag, name='scale_diag')
# Don't enable variable counting. This is because rescaling is
# done for each input, which will exceed two convert_to_tensor calls.
result_kernel = tfp.math.psd_kernels.FeatureScaled(
kernel=base_kernel,
scale_diag=scale_diag,
validate_args=True)
return result_kernel, kernel_variable_names
def test_compare_geth_hevm(b):
code = b.hex()
note("code that caused failure: ")
note(code)
# prepopulate the stack a bit
x = os.system(
'evm --code ' + code +
' --gas 0xffffffffffffffff --json --receiver 0xacab --nomemory --prestate ./genesis.json run > gethout'
)
y = os.system(
'hevm exec --code ' + code +
' --gas 0xffffffffffffffff --chainid 0x539 --gaslimit 0xfffffffff --jsontrace --origin 0x73656e646572 --caller 0x73656e646572 > hevmout'
)
assert x == y
gethlines = open('gethout').read().split('\n')
hevmlines = open('hevmout').read().split('\n')
target(float(len(gethlines)))
for i in range(len(hevmlines) - 3):
gethline = gethlines[i]
hevmline = hevmlines[i]
hjson = json.loads(hevmline)
gjson = json.loads(gethline)
## printed when diverging
note('')
note('--- STEP ----')
note('geth thinks that')
note(gethline)
note('while hevm believes')
note(hevmline)
note('')
assert hjson['pc'] == gjson['pc']
assert hjson['stack'] == gjson['stack']
# we can't compare memsize for now because geth
# measures memory and memsize after the instruction,
# as opposed to all other fields...
# assert hjson['memSize'] == gjson['memSize']
assert hjson['gas'] == gjson['gas']
gethres = json.loads(gethlines[len(gethlines) - 2])
hevmres = json.loads(hevmlines[len(hevmlines) - 2])
note('--- OUTPUT ----')
note('geth thinks that')
note(gethres)
note('while hevm believes')
note(hevmres)
assert gethres['output'] == hevmres['output']
assert gethres['gasUsed'] == hevmres['gasUsed']
def foo(x):
if x > 11:
note('Lo')
failing[0] += 1
assert False
def base_distributions(draw,
dist_name=None,
batch_shape=None,
event_dim=None,
enable_vars=False,
eligibility_filter=lambda name: True):
"""Strategy for drawing arbitrary base Distributions.
This does not draw compound distributions like `Independent`,
`MixtureSameFamily`, or `TransformedDistribution`; only base Distributions
that do not accept other Distributions as arguments.
Args:
draw: Hypothesis strategy sampler supplied by `@hps.composite`.
dist_name: Optional Python `str`. If given, the produced distributions
will all have this type.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
Distribution. Hypothesis will pick a batch shape if omitted.
event_dim: Optional Python int giving the size of each of the
distribution's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all Tensors, never Variables or DeferredTensor.
eligibility_filter: Optional Python callable. Blacklists some Distribution
class names so they will not be drawn at the top level.
Returns:
dists: A strategy for drawing Distributions with the specified `batch_shape`
(or an arbitrary one if omitted).
"""
if dist_name is None:
names = [
k for k in INSTANTIABLE_BASE_DISTS.keys() if eligibility_filter(k)
]
dist_name = draw(hps.sampled_from(sorted(names)))
if dist_name == 'Empirical':
variants = [
k for k in INSTANTIABLE_BASE_DISTS.keys()
if eligibility_filter(k) and 'Empirical' in k
]
dist_name = draw(hps.sampled_from(sorted(variants)))
if batch_shape is None:
batch_shape = draw(tfp_hps.shapes())
params_kwargs = draw(
broadcasting_params(dist_name,
batch_shape,
event_dim=event_dim,
enable_vars=enable_vars))
params_constrained = constraint_for(dist_name)(params_kwargs)
hp.note('Forming dist {} with constrained parameters {}'.format(
dist_name, params_constrained))
assert_shapes_unchanged(params_kwargs, params_constrained)
params_constrained['validate_args'] = True
dist_cls = INSTANTIABLE_BASE_DISTS[dist_name].cls
result_dist = dist_cls(**params_constrained)
if batch_shape != result_dist.batch_shape:
msg = ('Distributions strategy generated a bad batch shape '
'for {}, should have been {}.').format(result_dist, batch_shape)
raise AssertionError(msg)
return result_dist
def mixtures_same_family(draw,
batch_shape=None,
event_dim=None,
enable_vars=False,
depth=None):
"""Strategy for drawing `MixtureSameFamily` distributions.
The component distribution is drawn from the `distributions` strategy.
The Categorical mixture distributions are either shared across all batch
members, or drawn independently for the full batch (as required by
`MixtureSameFamily`).
Args:
draw: Hypothesis strategy sampler supplied by `@hps.composite`.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
`MixtureSameFamily` distribution. The component distribution will have a
batch shape of 1 rank higher (for the components being mixed). Hypothesis
will pick a batch shape if omitted.
event_dim: Optional Python int giving the size of each of the component
distribution's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all Tensors, never Variables or DeferredTensor.
depth: Python `int` giving maximum nesting depth of compound Distributions.
Returns:
dists: A strategy for drawing `MixtureSameFamily` distributions with the
specified `batch_shape` (or an arbitrary one if omitted).
"""
if depth is None:
depth = draw(depths())
if batch_shape is None:
# Ensure the components dist has at least one batch dim (a component dim).
batch_shape = draw(tfp_hps.shapes(min_ndims=1, min_lastdimsize=2))
else: # This mixture adds a batch dim to its underlying components dist.
batch_shape = tensorshape_util.concatenate(
batch_shape,
draw(tfp_hps.shapes(min_ndims=1, max_ndims=1, min_lastdimsize=2)))
component = draw(
distributions(batch_shape=batch_shape,
event_dim=event_dim,
enable_vars=enable_vars,
depth=depth - 1))
hp.note(
'Drawing MixtureSameFamily with component {}; parameters {}'.format(
component, params_used(component)))
# scalar or same-shaped categorical?
mixture_batch_shape = draw(
hps.one_of(hps.just(batch_shape[:-1]), hps.just(tf.TensorShape([]))))
mixture_dist = draw(
base_distributions(dist_name='Categorical',
batch_shape=mixture_batch_shape,
event_dim=tensorshape_util.as_list(batch_shape)[-1],
enable_vars=enable_vars))
hp.note(('Forming MixtureSameFamily with '
'mixture distribution {}; parameters {}').format(
mixture_dist, params_used(mixture_dist)))
result_dist = tfd.MixtureSameFamily(components_distribution=component,
mixture_distribution=mixture_dist,
validate_args=True)
if batch_shape[:-1] != result_dist.batch_shape:
msg = ('MixtureSameFamily strategy generated a bad batch shape '
'for {}, should have been {}.').format(result_dist,
batch_shape[:-1])
raise AssertionError(msg)
return result_dist
def _test_slicing(self, data, dist):
strm = tfp_test_util.test_seed_stream()
batch_shape = dist.batch_shape
slices = data.draw(valid_slices(batch_shape))
slice_str = 'dist[{}]'.format(', '.join(stringify_slices(slices)))
# Make sure the slice string appears in Hypothesis' attempted example log
hp.note('Using slice ' + slice_str)
if not slices: # Nothing further to check.
return
sliced_zeros = np.zeros(batch_shape)[slices]
sliced_dist = dist[slices]
# Check that slicing modifies batch shape as expected.
self.assertAllEqual(sliced_zeros.shape, sliced_dist.batch_shape)
if not sliced_zeros.size:
# TODO(b/128924708): Fix distributions that fail on degenerate empty
# shapes, e.g. Multinomial, DirichletMultinomial, ...
return
# Check that sampling of sliced distributions executes.
with no_tf_rank_errors():
samples = self.evaluate(dist.sample(seed=strm()))
sliced_samples = self.evaluate(sliced_dist.sample(seed=strm()))
# Come up with the slices for samples (which must also include event dims).
sample_slices = (tuple(slices) if isinstance(
slices, collections.Sequence) else (slices, ))
if Ellipsis not in sample_slices:
sample_slices += (Ellipsis, )
sample_slices += tuple([slice(None)] *
tensorshape_util.rank(dist.event_shape))
# Report sub-sliced samples (on which we compare log_prob) to hypothesis.
hp.note('Sample(s) for testing log_prob ' +
str(samples[sample_slices]))
# Check that sampling a sliced distribution produces the same shape as
# slicing the samples from the original.
self.assertAllEqual(samples[sample_slices].shape, sliced_samples.shape)
# Check that a sliced distribution can compute the log_prob of its own
# samples (up to numerical validation errors).
with no_tf_rank_errors():
try:
lp = self.evaluate(dist.log_prob(samples))
except tf.errors.InvalidArgumentError:
# TODO(b/129271256): d.log_prob(d.sample()) should not fail
# validate_args checks.
# We only tolerate this case for the non-sliced dist.
return
sliced_lp = self.evaluate(
sliced_dist.log_prob(samples[sample_slices]))
# Check that the sliced dist's log_prob agrees with slicing the original's
# log_prob.
# TODO(b/128708201): Better numerics for Geometric/Beta?
# Eigen can return quite different results for packet vs non-packet ops.
# To work around this, we use a much larger rtol for the last 3
# (assuming packet size 4) elements.
packetized_lp = lp[slices].reshape(-1)[:-3]
packetized_sliced_lp = sliced_lp.reshape(-1)[:-3]
rtol = (0.1 if any(x in dist.name for x in ('Geometric', 'Beta',
'Dirichlet')) else 0.02)
self.assertAllClose(packetized_lp, packetized_sliced_lp, rtol=rtol)
possibly_nonpacket_lp = lp[slices].reshape(-1)[-3:]
possibly_nonpacket_sliced_lp = sliced_lp.reshape(-1)[-3:]
# TODO(b/266018543): Resolve nan disagreement between eigen vec/scalar paths
hasnan = (np.isnan(possibly_nonpacket_lp)
| np.isnan(possibly_nonpacket_sliced_lp))
possibly_nonpacket_lp = np.where(hasnan, 0, possibly_nonpacket_lp)
possibly_nonpacket_sliced_lp = np.where(hasnan, 0,
possibly_nonpacket_sliced_lp)
self.assertAllClose(possibly_nonpacket_lp,
possibly_nonpacket_sliced_lp,
rtol=0.4,
atol=1e-4)
def bijectors(draw,
bijector_name=None,
batch_shape=None,
event_dim=None,
enable_vars=False):
"""Strategy for drawing Bijectors.
The emitted bijector may be a basic bijector or an `Invert` of a basic
bijector, but not a compound like `Chain`.
Args:
draw: Hypothesis strategy sampler supplied by `@hps.composite`.
bijector_name: Optional Python `str`. If given, the produced bijectors
will all have this type. If omitted, Hypothesis chooses one from
the whitelist `TF2_FRIENDLY_BIJECTORS`.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
bijector. Hypothesis will pick one if omitted.
event_dim: Optional Python int giving the size of each of the underlying
distribution's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all `tf.Tensor`s and not {`tf.Variable`, `tfp.util.DeferredTensor`
`tfp.util.TransformedVariable`}
Returns:
bijectors: A strategy for drawing bijectors with the specified `batch_shape`
(or an arbitrary one if omitted).
"""
if bijector_name is None:
bijector_name = draw(hps.sampled_from(TF2_FRIENDLY_BIJECTORS))
if batch_shape is None:
batch_shape = draw(tfp_hps.shapes())
if event_dim is None:
event_dim = draw(hps.integers(min_value=2, max_value=6))
if bijector_name == 'Invert':
underlying_name = draw(
hps.sampled_from(sorted(set(TF2_FRIENDLY_BIJECTORS) - {'Invert'})))
underlying = draw(
bijectors(bijector_name=underlying_name,
batch_shape=batch_shape,
event_dim=event_dim,
enable_vars=enable_vars))
bijector_params = {'bijector': underlying}
msg = 'Forming Invert bijector with underlying bijector {}.'
hp.note(msg.format(underlying))
elif bijector_name == 'TransformDiagonal':
underlying_name = draw(
hps.sampled_from(sorted(TRANSFORM_DIAGONAL_WHITELIST)))
underlying = draw(
bijectors(bijector_name=underlying_name,
batch_shape=(),
event_dim=event_dim,
enable_vars=enable_vars))
bijector_params = {'diag_bijector': underlying}
msg = 'Forming TransformDiagonal bijector with underlying bijector {}.'
hp.note(msg.format(underlying))
elif bijector_name == 'Inline':
scale = draw(
tfp_hps.maybe_variable(
hps.sampled_from(np.float32([1., -1., 2, -2.])), enable_vars))
b = tfb.Scale(scale=scale)
bijector_params = dict(
forward_fn=CallableModule(b.forward, b),
inverse_fn=b.inverse,
forward_log_det_jacobian_fn=lambda x: b.forward_log_det_jacobian( # pylint: disable=g-long-lambda
x,
event_ndims=b.forward_min_event_ndims),
forward_min_event_ndims=b.forward_min_event_ndims,
is_constant_jacobian=b.is_constant_jacobian,
is_increasing=b._internal_is_increasing, # pylint: disable=protected-access
)
elif bijector_name == 'DiscreteCosineTransform':
dct_type = hps.integers(min_value=2, max_value=3)
bijector_params = {'dct_type': draw(dct_type)}
elif bijector_name == 'PowerTransform':
power = hps.floats(min_value=1e-6, max_value=10.)
bijector_params = {'power': draw(power)}
elif bijector_name == 'Permute':
event_ndims = draw(hps.integers(min_value=1, max_value=2))
axis = hps.integers(min_value=-event_ndims, max_value=-1)
# This is a permutation of dimensions within an axis.
# (Contrast with `Transpose` below.)
bijector_params = {
'axis':
draw(axis),
'permutation':
draw(
tfp_hps.maybe_variable(hps.permutations(np.arange(event_dim)),
enable_vars,
dtype=tf.int32))
}
elif bijector_name == 'Reshape':
event_shape_out = draw(tfp_hps.shapes(min_ndims=1))
# TODO(b/142135119): Wanted to draw general input and output shapes like the
# following, but Hypothesis complained about filtering out too many things.
# event_shape_in = draw(tfp_hps.shapes(min_ndims=1))
# hp.assume(event_shape_out.num_elements() == event_shape_in.num_elements())
event_shape_in = [event_shape_out.num_elements()]
bijector_params = {
'event_shape_out': event_shape_out,
'event_shape_in': event_shape_in
}
elif bijector_name == 'Transpose':
event_ndims = draw(hps.integers(min_value=0, max_value=2))
# This is a permutation of axes.
# (Contrast with `Permute` above.)
bijector_params = {
'perm': draw(hps.permutations(np.arange(event_ndims)))
}
else:
bijector_params = draw(
broadcasting_params(bijector_name,
batch_shape,
event_dim=event_dim,
enable_vars=enable_vars))
ctor = getattr(tfb, bijector_name)
return ctor(validate_args=True, **bijector_params)
def base_distributions(draw,
dist_name=None,
batch_shape=None,
event_dim=None,
enable_vars=False,
eligibility_filter=lambda name: True,
validate_args=True):
"""Strategy for drawing arbitrary base Distributions.
This does not draw compound distributions like `Independent`,
`MixtureSameFamily`, or `TransformedDistribution`; only base Distributions
that do not accept other Distributions as arguments.
Args:
draw: Hypothesis strategy sampler supplied by `@hps.composite`.
dist_name: Optional Python `str`. If given, the produced distributions
will all have this type.
batch_shape: An optional `TensorShape`. The batch shape of the resulting
Distribution. Hypothesis will pick a batch shape if omitted.
event_dim: Optional Python int giving the size of each of the
distribution's parameters' event dimensions. This is shared across all
parameters, permitting square event matrices, compatible location and
scale Tensors, etc. If omitted, Hypothesis will choose one.
enable_vars: TODO(bjp): Make this `True` all the time and put variable
initialization in slicing_test. If `False`, the returned parameters are
all `tf.Tensor`s and not {`tf.Variable`, `tfp.util.DeferredTensor`
`tfp.util.TransformedVariable`}.
eligibility_filter: Optional Python callable. Blacklists some Distribution
class names so they will not be drawn at the top level.
validate_args: Python `bool`; whether to enable runtime assertions.
Returns:
dists: A strategy for drawing Distributions with the specified `batch_shape`
(or an arbitrary one if omitted).
"""
if dist_name is None:
names = [
k for k in INSTANTIABLE_BASE_DISTS.keys() if eligibility_filter(k)
]
dist_name = draw(hps.sampled_from(sorted(names)))
if dist_name == 'Empirical':
variants = [
k for k in INSTANTIABLE_BASE_DISTS.keys()
if eligibility_filter(k) and 'Empirical' in k
]
dist_name = draw(hps.sampled_from(sorted(variants)))
if batch_shape is None:
batch_shape = draw(tfp_hps.shapes())
# Draw raw parameters
params_kwargs = draw(
broadcasting_params(dist_name,
batch_shape,
event_dim=event_dim,
enable_vars=enable_vars))
hp.note('Forming dist {} with raw parameters {}'.format(
dist_name, params_kwargs))
# Constrain them to legal values
params_constrained = constraint_for(dist_name)(params_kwargs)
# Sometimes the "distribution constraint" fn may replace c2t-tracking
# DeferredTensor params with Tensor params (e.g. fix_triangular). In such
# cases, we preserve the c2t-tracking DeferredTensors by wrapping them but
# ignoring the value. We similarly reinstate raw tf.Variables, so they
# appear in the distribution's `variables` list and can be initialized.
for k in params_constrained:
if (k in params_kwargs
and isinstance(params_kwargs[k],
(tfp_util.DeferredTensor, tf.Variable))
and params_kwargs[k] is not params_constrained[k]):
def constrained_value(v, val=params_constrained[k]):
# While the gradient to v will be 0, we only care about the c2t counts.
return v * 0 + val
params_constrained[k] = tfp_util.DeferredTensor(
params_kwargs[k], constrained_value)
hp.note('Forming dist {} with constrained parameters {}'.format(
dist_name, params_constrained))
assert_shapes_unchanged(params_kwargs, params_constrained)
params_constrained['validate_args'] = validate_args
if dist_name in ['Wishart', 'WishartTriL']:
# With the default `input_output_cholesky = False`, Wishart occasionally
# produces samples for which the Cholesky decompositions fail, causing
# an error in testDistribution when `log_prob` is called on a sample.
params_constrained['input_output_cholesky'] = True
# Actually construct the distribution
dist_cls = INSTANTIABLE_BASE_DISTS[dist_name].cls
result_dist = dist_cls(**params_constrained)
# Check that the batch shape came out as expected
if batch_shape != result_dist.batch_shape:
msg = ('Distributions strategy generated a bad batch shape '
'for {}, should have been {}.').format(result_dist, batch_shape)
raise AssertionError(msg)
return result_dist
