def test_safe_folder_do_not_overwrite(job_file, empty_folder):
"""Safe folders should not overwrite files, but rather rename if needed"""
safe_folder = SafeFolder(path=empty_folder)
copy_job_file(job_file, safe_folder)
copy_job_file(job_file, safe_folder)
assert len([x for x in safe_folder.path.glob("*") if x.is_file()]) == 2
def test_job_folder_missing_job_id(job_file, job_folder):
"""job files with missing id should be saved in a special 'unknown' category"""
job_file.job_id = None
copy_job_file(job_file, job_folder)
assert job_folder.get_job_ids() == []
assert len(job_folder.get_unknown_job_files()) == 1
def test_job_folder_unparsable_folder(job_file, job_folder):
"""Internally a job folder has sub folders for each job id. Handle unparsable job ids gracefully"""
copy_job_file(job_file, job_folder)
# introduce a folder that should be ignored because it cannot be linked to a job id
(job_folder.path / "non_int_folder").mkdir()
# This should still yield only 1 job id, ignoring the weird folder
assert job_folder.get_job_ids() == [job_file.job_id]
def test_job_folder_do_not_overwrite(job_file, job_folder):
"""Files with the same name will not overwrite existing ones"""
# copy the same file twice
copy_job_file(job_file, job_folder)
copy_job_file(job_file, job_folder)
# now there should be two files, because JobFolders never overwrite files
assert len(job_folder.get_files(job_file.job_id)) == 2
def test_job_folder(job_file, job_folder):
"""A job folder should sort job files per jobs """
# copy one jobfile to the folder
copy_job_file(job_file, job_folder)
# the folder should now know this id
assert job_folder.get_job_ids() == [job_file.job_id]
# and have one file for this id
assert len(job_folder.get_files(job_file.job_id)) == 1
def download_file_to(self, file_info: FileInfo, folder: SafeFolder):
"""Get file described in file_info and put it in folder
Parameters
----------
file_info: FileInfo
information specifying a single DICOM file
folder: SafeFolder
path to download to
Returns
-------
idis.jobs.filehandling.JobFile
The file
"""
job_file = JobFile(job_id=file_info.job.id, path=file_info.path)
copy_job_file(job_file, destination=folder)