def resolve(self, pid):
oid = parse_id(pid)
if oid.isbin:
return Bin(pid)
elif oid.istarget:
return Target(pid)
# FIXME add day dir
raise KeyError('unrecognized pid ' + pid)
def resolve(self, pid):
oid = parse_id(pid)
if oid.isbin:
return Bin(pid)
elif oid.istarget:
return Target(pid)
# FIXME add day dir
raise KeyError("unrecognized pid " + pid)
def __init__(self, dir='.'):
self.dir = dir
if not no_day_dirs():
oid = parse_id(self.pid)
self.time_format = oid.date_format
self.time_string = oid.yearday
else:
self.time_string = '2000_001'
def __init__(self, dir='.'): self.dir = dir if not no_day_dirs(): oid = parse_id(self.pid) self.time_format = oid.date_format self.time_string = oid.yearday else: self.time_string = '2000_001'
def bin_path(self, pid):
oid = parse_id(pid)
tried = []
for path in oid.paths([yd.dir for yd in self.years_dirs]):
bin_path = path + "." + ADC_EXT
tried += [bin_path]
if os.path.exists(bin_path):
return bin_path
raise KeyError("no path to bin " + pid + (" ".join(tried)))
def bin_path(self, pid):
oid = parse_id(pid)
tried = []
for path in oid.paths([yd.dir for yd in self.years_dirs]):
bin_path = path + '.' + ADC_EXT
tried += [bin_path]
if os.path.exists(bin_path):
return bin_path
raise KeyError('no path to bin ' + pid + (' '.join(tried)))
def __init__(self, path):
self.dir = os.path.dirname(os.path.abspath(path))
file = os.path.basename(path)
(self.id, ext) = os.path.splitext(file)
# the timestamp is the approximate time the syringe was sampled and flow began
self.pid = ifcb.pid(self.id)
self.oid = parse_id(self.id)
self.time_string = self.oid.datetime
self.instrument = self.oid.instrument_number
self.time_format = self.oid.datetime_format
def __init__(self, path):
self.dir = os.path.dirname(os.path.abspath(path))
file = os.path.basename(path)
(self.id, ext) = os.path.splitext(file)
# the timestamp is the approximate time the syringe was sampled and flow began
self.pid = ifcb.pid(self.id)
self.oid = parse_id(self.id)
self.time_string = self.oid.datetime
self.instrument = self.oid.instrument_number
self.time_format = self.oid.datetime_format
def resolve(self, pid):
"""Resolve a pid in this filesystem"""
oid = parse_id(pid)
if oid.isday:
return self.day(pid)
elif oid.isbin:
return self.bin(pid)
elif oid.istarget:
return self.target(pid)
raise KeyError('unrecognized pid ' + pid)
def resolve(self, pid):
"""Resolve a pid in this filesystem"""
oid = parse_id(pid)
if oid.isday:
return self.day(pid)
elif oid.isbin:
return self.bin(pid)
elif oid.istarget:
return self.target(pid)
raise KeyError("unrecognized pid " + pid)
def zip_path(pid):
oid = parse_id(pid)
bin = oid.bin_lid
day = oid.yearday
year = oid.year
tried = []
for blob_root in BLOB_ROOTS:
blobzip = path.join(blob_root, year, day, bin + "_blobs_v2.zip")
if path.exists(blobzip):
return blobzip
tried += [blobzip]
raise KeyError(pid + " blob not found")
def zip_path(pid):
oid = parse_id(pid)
bin = oid.bin_lid
day = oid.yearday
year = oid.year
tried = []
for blob_root in BLOB_ROOTS:
blobzip = path.join(blob_root, year, day, bin + '_blobs_v2.zip')
if path.exists(blobzip):
return blobzip
tried += [blobzip]
raise KeyError(pid + ' blob not found')
def __iter__(self):
if 'NO_DAY_DIRS' in dir(config) and config.NO_DAY_DIRS:
yield DayDir(os.path.abspath(self.dir))
return
try:
for item in sorted(os.listdir(self.dir)):
f = os.path.join(self.dir, item)
try:
if parse_id(item).isday:
yield DayDir(os.path.abspath(f))
else:
raise KeyError
except KeyError:
print '%s is not a day' % item # FIXME debug
except OSError:
noop = None # FIXME log
def __iter__(self): if 'NO_DAY_DIRS' in dir(config) and config.NO_DAY_DIRS: yield DayDir(os.path.abspath(self.dir)) return try: for item in sorted(os.listdir(self.dir)): f = os.path.join(self.dir, item) try: if parse_id(item).isday: yield DayDir(os.path.abspath(f)) else: raise KeyError except KeyError: print '%s is not a day' % item # FIXME debug except OSError: noop = None # FIXME log
def __target(self, pid):
oid = parse_id(pid)
bin = self.bin(ifcb.pid(oid.bin_lid))
return bin.target(int(oid.target)) # bin.target is 0-based
def __target(self, pid):
oid = parse_id(pid)
bin = self.bin(ifcb.pid(oid.bin_lid))
return bin.target(int(oid.target)) # bin.target is 0-based
def year(self, pid):
"""Year part of pathname based on configured namespace"""
return parse_id(pid, self.config.namespace).year
def year_day(self, pid):
"""Year/day dir path of pathname based on configured namespace"""
return parse_id(pid, self.config.namespace).yearday
def lid(self, pid):
"""Local ID part of pathname based on configured namespace"""
return parse_id(pid, self.config.namespace).as_lid
def lid(self, pid):
"""Local ID part of pathname based on configured namespace"""
return parse_id(pid, self.config.namespace).as_lid
def year_day(self, pid):
"""Year/day dir path of pathname based on configured namespace"""
return parse_id(pid, self.config.namespace).yearday
def year(self, pid):
"""Year part of pathname based on configured namespace"""
return parse_id(pid, self.config.namespace).year
