def test4():
bin = J.bin(ifcb.pid('IFCB5_2011_056_024112'))
bin2html(bin)
bin2json(bin)
print ''
bin2xml(bin)
bin2adc(bin)
bin2hdr(bin)
def test4():
bin = J.bin(ifcb.pid('IFCB5_2011_056_024112'))
bin2html(bin)
bin2json(bin)
print ''
bin2xml(bin)
bin2adc(bin)
bin2hdr(bin)
def latest_bins(n=25,date=None):
if date is None:
date = time.gmtime()
dt = utcdatetime(date)
c = psql.connect(PSQL_CONNECT)
db = c.cursor()
db.execute("select lid,sample_time from bins where sample_time <= %s order by sample_time desc limit %s",(dt,n)) # dangling comma is necessary
for row in db.fetchall():
yield ifcb.pid(row[0])
def __init__(self, path):
self.dir = os.path.dirname(os.path.abspath(path))
file = os.path.basename(path)
(self.id, ext) = os.path.splitext(file)
# the timestamp is the approximate time the syringe was sampled and flow began
self.pid = ifcb.pid(self.id)
self.oid = parse_id(self.id)
self.time_string = self.oid.datetime
self.instrument = self.oid.instrument_number
self.time_format = self.oid.datetime_format
def __init__(self, path):
self.dir = os.path.dirname(os.path.abspath(path))
file = os.path.basename(path)
(self.id, ext) = os.path.splitext(file)
# the timestamp is the approximate time the syringe was sampled and flow began
self.pid = ifcb.pid(self.id)
self.oid = parse_id(self.id)
self.time_string = self.oid.datetime
self.instrument = self.oid.instrument_number
self.time_format = self.oid.datetime_format
def day_bins(date=None):
if date is None:
date = time.gmtime()
dt = utcdatetime(date)
c = psql.connect(PSQL_CONNECT)
db = c.cursor()
db.execute("set session time zone 'UTC'")
db.execute("select lid,sample_time from bins where date_part('year',sample_time) = %s and date_part('month',sample_time) = %s and date_part('day',sample_time) = %s order by sample_time desc",(dt.year,dt.month,dt.day))
for row in db.fetchall():
yield ifcb.pid(row[0])
def test5():
target = J.target(ifcb.pid('IFCB5_2011_056_024112_000001'))
target2xml(target)
target2html(target)
target2rdf(target)
def __repr__(self):
return ifcb.pid(self.lid)
def as_pid(self):
return ifcb.pid(self.lid)
def pid(self):
if no_day_dirs():
return self.dir
return ifcb.pid(os.path.basename(self.dir))
from config import FS_ROOTS
from ifcb.io.path import Filesystem
import mosaic
import sys
import ifcb
if __name__=='__main__':
if len(sys.argv) < 2:
print >> sys.stderr, 'usage: %s [pid] [outputfile]' % sys.argv[0]
else:
fs = Filesystem(FS_ROOTS)
b = fs.resolve(ifcb.pid(sys.argv[1]))
outfile = None
if len(sys.argv) > 2:
outfile = sys.argv[2]
print >> sys.stderr, 'Generating mosaic for %s' % str(b)
mosaic.save_mosaic(b,outfile)
def test5():
target = J.target(ifcb.pid('IFCB5_2011_056_024112_000001'))
target2xml(target)
target2html(target)
target2rdf(target)
def __target(self, pid):
oid = parse_id(pid)
bin = self.bin(ifcb.pid(oid.bin_lid))
return bin.target(int(oid.target)) # bin.target is 0-based
def __target(self, pid):
oid = parse_id(pid)
bin = self.bin(ifcb.pid(oid.bin_lid))
return bin.target(int(oid.target)) # bin.target is 0-based
def pid(self): if no_day_dirs(): return self.dir return ifcb.pid(os.path.basename(self.dir))
from config import FS_ROOTS
from ifcb.io.path import Filesystem
import mosaic
import sys
import ifcb
if __name__ == '__main__':
if len(sys.argv) < 2:
print >> sys.stderr, 'usage: %s [pid] [outputfile]' % sys.argv[0]
else:
fs = Filesystem(FS_ROOTS)
b = fs.resolve(ifcb.pid(sys.argv[1]))
outfile = None
if len(sys.argv) > 2:
outfile = sys.argv[2]
print >> sys.stderr, 'Generating mosaic for %s' % str(b)
mosaic.save_mosaic(b, outfile)
