def _initColors(self):
self.mergerColors = [ QColor(c) for c in LabelingGui._createDefault16ColorColorTable()[1:] ]
self.mergerColors[0] = QColor(0,0,0,0) # 0 and 1 must be transparent
self.mergerColors[1] = QColor(0,0,0,0)
def hideEvent(self, event):
#Ensure interactive is toggled of when leaving this GUI
self.toggleInteractive(False)
self.labelingDrawerUi.liveUpdateButton.setChecked(False)
LabelingGui.hideEvent(self, event)
def _initColors(self):
self.mergerColors = [ QColor(c) for c in LabelingGui._createDefault16ColorColorTable()[1:] ]
self.mergerColors[0] = QColor(0,0,0,0) # 0 and 1 must be transparent
self.mergerColors[1] = QColor(0,0,0,0)
def __init__(self, parentApplet, topLevelOperatorView, drawerUiPath=None):
self.topLevelOperatorView = topLevelOperatorView
#members
self._doneSegmentationLayer = None
self._showSegmentationIn3D = False
#self._showUncertaintyLayer = False
#end: members
labelingSlots = LabelingGui.LabelingSlots()
labelingSlots.labelInput = topLevelOperatorView.WriteSeeds
labelingSlots.labelOutput = topLevelOperatorView.opLabelArray.Output
labelingSlots.labelEraserValue = topLevelOperatorView.opLabelArray.EraserLabelValue
labelingSlots.labelNames = topLevelOperatorView.LabelNames
labelingSlots.labelDelete = topLevelOperatorView.opLabelArray.DeleteLabel
labelingSlots.maxLabelValue = topLevelOperatorView.opLabelArray.MaxLabelValue
labelingSlots.labelsAllowed = topLevelOperatorView.LabelsAllowed
# We provide our own UI file (which adds an extra control for interactive mode)
directory = os.path.split(__file__)[0]
if drawerUiPath is None:
drawerUiPath = os.path.join(directory, 'carvingDrawer.ui')
self.dialogdirCOM = os.path.join(directory,
'carvingObjectManagement.ui')
self.dialogdirSAD = os.path.join(directory, 'saveAsDialog.ui')
rawInputSlot = topLevelOperatorView.RawData
super(CarvingGui,
self).__init__(parentApplet, labelingSlots, topLevelOperatorView,
drawerUiPath, rawInputSlot)
self.labelingDrawerUi.currentObjectLabel.setText("<not saved yet>")
# Init special base class members
self.minLabelNumber = 2
self.maxLabelNumber = 2
mgr = ShortcutManager()
ActionInfo = ShortcutManager.ActionInfo
#set up keyboard shortcuts
mgr.register(
"3",
ActionInfo("Carving", "Run interactive segmentation",
"Run interactive segmentation",
self.labelingDrawerUi.segment.click,
self.labelingDrawerUi.segment,
self.labelingDrawerUi.segment))
try:
self.render = True
self._shownObjects3D = {}
self._renderMgr = RenderingManager(self.editor.view3d)
except:
self.render = False
# Segmentation is toggled on by default in _after_init, below.
# (We can't enable it until the layers are all present.)
self._showSegmentationIn3D = False
self._segmentation_3d_label = None
self.labelingDrawerUi.segment.clicked.connect(self.onSegmentButton)
self.labelingDrawerUi.segment.setEnabled(True)
self.topLevelOperatorView.Segmentation.notifyDirty(
bind(self._update_rendering))
self.topLevelOperatorView.HasSegmentation.notifyValueChanged(
bind(self._updateGui))
## uncertainty
#self.labelingDrawerUi.pushButtonUncertaintyFG.setEnabled(False)
#self.labelingDrawerUi.pushButtonUncertaintyBG.setEnabled(False)
#def onUncertaintyFGButton():
# logger.debug( "uncertFG button clicked" )
# pos = self.topLevelOperatorView.getMaxUncertaintyPos(label=2)
# self.editor.posModel.slicingPos = (pos[0], pos[1], pos[2])
#self.labelingDrawerUi.pushButtonUncertaintyFG.clicked.connect(onUncertaintyFGButton)
#def onUncertaintyBGButton():
# logger.debug( "uncertBG button clicked" )
# pos = self.topLevelOperatorView.getMaxUncertaintyPos(label=1)
# self.editor.posModel.slicingPos = (pos[0], pos[1], pos[2])
#self.labelingDrawerUi.pushButtonUncertaintyBG.clicked.connect(onUncertaintyBGButton)
#def onUncertaintyCombo(value):
# if value == 0:
# value = "none"
# self.labelingDrawerUi.pushButtonUncertaintyFG.setEnabled(False)
# self.labelingDrawerUi.pushButtonUncertaintyBG.setEnabled(False)
# self._showUncertaintyLayer = False
# else:
# if value == 1:
# value = "localMargin"
# elif value == 2:
# value = "exchangeCount"
# elif value == 3:
# value = "gabow"
# else:
# raise RuntimeError("unhandled case '%r'" % value)
# self.labelingDrawerUi.pushButtonUncertaintyFG.setEnabled(True)
# self.labelingDrawerUi.pushButtonUncertaintyBG.setEnabled(True)
# self._showUncertaintyLayer = True
# logger.debug( "uncertainty changed to %r" % value )
# self.topLevelOperatorView.UncertaintyType.setValue(value)
# self.updateAllLayers() #make sure that an added/deleted uncertainty layer is recognized
#self.labelingDrawerUi.uncertaintyCombo.currentIndexChanged.connect(onUncertaintyCombo)
## background priority
def onBackgroundPrioritySpin(value):
logger.debug("background priority changed to %f" % value)
self.topLevelOperatorView.BackgroundPriority.setValue(value)
self.labelingDrawerUi.backgroundPrioritySpin.valueChanged.connect(
onBackgroundPrioritySpin)
def onBackgroundPriorityDirty(slot, roi):
oldValue = self.labelingDrawerUi.backgroundPrioritySpin.value()
newValue = self.topLevelOperatorView.BackgroundPriority.value
if newValue != oldValue:
self.labelingDrawerUi.backgroundPrioritySpin.setValue(newValue)
self.topLevelOperatorView.BackgroundPriority.notifyDirty(
onBackgroundPriorityDirty)
## bias
def onNoBiasBelowDirty(slot, roi):
oldValue = self.labelingDrawerUi.noBiasBelowSpin.value()
newValue = self.topLevelOperatorView.NoBiasBelow.value
if newValue != oldValue:
self.labelingDrawerUi.noBiasBelowSpin.setValue(newValue)
self.topLevelOperatorView.NoBiasBelow.notifyDirty(onNoBiasBelowDirty)
def onNoBiasBelowSpin(value):
logger.debug("background priority changed to %f" % value)
self.topLevelOperatorView.NoBiasBelow.setValue(value)
self.labelingDrawerUi.noBiasBelowSpin.valueChanged.connect(
onNoBiasBelowSpin)
## save
self.labelingDrawerUi.save.clicked.connect(self.onSaveButton)
## clear
self.labelingDrawerUi.clear.clicked.connect(self._onClearAction)
## object names
self.labelingDrawerUi.namesButton.clicked.connect(
self.onShowObjectNames)
if hasattr(self.labelingDrawerUi, 'exportAllMeshesButton'):
self.labelingDrawerUi.exportAllMeshesButton.clicked.connect(
self._exportAllObjectMeshes)
self.labelingDrawerUi.labelListView.allowDelete = False
self._labelControlUi.labelListModel.allowRemove(False)
def layerIndexForName(name):
return self.layerstack.findMatchingIndex(lambda x: x.name == name)
def addLayerToggleShortcut(layername, shortcut):
def toggle():
row = layerIndexForName(layername)
self.layerstack.selectRow(row)
layer = self.layerstack[row]
layer.visible = not layer.visible
self.viewerControlWidget().layerWidget.setFocus()
mgr.register(
shortcut,
ActionInfo("Carving", "Toggle layer %s" % layername,
"Toggle layer %s" % layername, toggle,
self.viewerControlWidget(), None))
#TODO
addLayerToggleShortcut("Completed segments (unicolor)", "d")
addLayerToggleShortcut("Segmentation", "s")
addLayerToggleShortcut("Input Data", "r")
'''
def updateLayerTimings():
s = "Layer timings:\n"
for l in self.layerstack:
s += "%s: %f sec.\n" % (l.name, l.averageTimePerTile)
self.labelingDrawerUi.layerTimings.setText(s)
t = QTimer(self)
t.setInterval(1*1000) # 10 seconds
t.start()
t.timeout.connect(updateLayerTimings)
'''
def makeColortable():
self._doneSegmentationColortable = [QColor(0, 0, 0, 0).rgba()]
for i in range(254):
r, g, b = numpy.random.randint(0, 255), numpy.random.randint(
0, 255), numpy.random.randint(0, 255)
# ensure colors have sufficient distance to pure red and pure green
while (255 - r) + g + b < 128 or r + (255 - g) + b < 128:
r, g, b = numpy.random.randint(
0, 255), numpy.random.randint(
0, 255), numpy.random.randint(0, 255)
self._doneSegmentationColortable.append(QColor(r, g, b).rgba())
self._doneSegmentationColortable.append(QColor(0, 255, 0).rgba())
makeColortable()
def onRandomizeColors():
if self._doneSegmentationLayer is not None:
logger.debug("randomizing colors ...")
makeColortable()
self._doneSegmentationLayer.colorTable = self._doneSegmentationColortable
if self.render and self._renderMgr.ready:
self._update_rendering()
#self.labelingDrawerUi.randomizeColors.clicked.connect(onRandomizeColors)
self._updateGui()
def __init__(self, parentApplet, op):
self.__cleanup_fns = []
# Tell our base class which slots to monitor
labelSlots = LabelingGui.LabelingSlots()
labelSlots.labelInput = op.LabelInputs
labelSlots.labelOutput = op.LabelImages
labelSlots.labelEraserValue = op.Eraser
labelSlots.labelDelete = op.DeleteLabel
labelSlots.maxLabelValue = op.NumLabels
labelSlots.labelNames = op.LabelNames
# We provide our own UI file (which adds an extra control for
# interactive mode) This UI file is copied from
# pixelClassification pipeline
#
labelingDrawerUiPath = os.path.split(
__file__)[0] + '/labelingDrawer.ui'
# Base class init
super(ObjectClassificationGui, self).__init__(parentApplet,
labelSlots,
op,
labelingDrawerUiPath,
crosshair=False)
self.op = op
self.applet = parentApplet
self.threadRouter = ThreadRouter(self)
op.Warnings.notifyDirty(self.handleWarnings)
self.__cleanup_fns.append(
partial(op.Warnings.unregisterDirty, self.handleWarnings))
self._retained_weakrefs = []
# unused
self.labelingDrawerUi.savePredictionsButton.setEnabled(False)
self.labelingDrawerUi.savePredictionsButton.setVisible(False)
self.labelingDrawerUi.brushSizeComboBox.setEnabled(False)
self.labelingDrawerUi.brushSizeComboBox.setVisible(False)
self.labelingDrawerUi.brushSizeCaption.setVisible(False)
self._colorTable16_forpmaps = self._createDefault16ColorColorTable()
self._colorTable16_forpmaps[15] = QColor(
Qt.black).rgba() #for objects with NaNs in features
# button handlers
self._interactiveMode = False
self._showPredictions = False
self._labelMode = True
self.labelingDrawerUi.subsetFeaturesButton.clicked.connect(
self.handleSubsetFeaturesClicked)
self.labelingDrawerUi.labelAssistButton.clicked.connect(
self.handleLabelAssistClicked)
self.labelingDrawerUi.checkInteractive.toggled.connect(
self.handleInteractiveModeClicked)
self.labelingDrawerUi.checkShowPredictions.toggled.connect(
self.handleShowPredictionsClicked)
#select all the features in the beginning
cfn = None
already_selected = None
if self.op.ComputedFeatureNames.ready():
cfn = self.op.ComputedFeatureNames[:].wait()
if self.op.SelectedFeatures.ready():
already_selected = self.op.SelectedFeatures[:].wait()
if already_selected is None or len(already_selected) == 0:
if cfn is not None:
already_selected = cfn
self.op.SelectedFeatures.setValue(already_selected)
nfeatures = 0
if already_selected is not None:
for plugin_features in already_selected.values():
nfeatures += len(plugin_features)
self.labelingDrawerUi.featuresSubset.setText(
"{} features selected,\nsome may have multiple channels".format(
nfeatures))
# enable/disable buttons logic
self.op.ObjectFeatures.notifyDirty(bind(self.checkEnableButtons))
self.__cleanup_fns.append(
partial(op.ObjectFeatures.unregisterDirty,
bind(self.checkEnableButtons)))
self.op.NumLabels.notifyReady(bind(self.checkEnableButtons))
self.__cleanup_fns.append(
partial(op.NumLabels.unregisterReady,
bind(self.checkEnableButtons)))
self.op.NumLabels.notifyDirty(bind(self.checkEnableButtons))
self.__cleanup_fns.append(
partial(op.NumLabels.unregisterDirty,
bind(self.checkEnableButtons)))
self.op.SelectedFeatures.notifyDirty(bind(self.checkEnableButtons))
self.__cleanup_fns.append(
partial(op.SelectedFeatures.unregisterDirty,
bind(self.checkEnableButtons)))
if not self.op.AllowAddLabel([]).wait()[0]:
self.labelingDrawerUi.AddLabelButton.hide()
self.labelingDrawerUi.AddLabelButton.clicked.disconnect()
self.badObjectBox = None
self.checkEnableButtons()
self._labelAssistDialog = None
def __init__(self,
parentApplet,
topLevelOperatorView,
labelingDrawerUiPath=None):
self.parentApplet = parentApplet
self.isInitialized = (
False # need this flag in pixelClassificationApplet where initialization is terminated with label selection
)
# Tell our base class which slots to monitor
labelSlots = LabelingGui.LabelingSlots()
labelSlots.labelInput = topLevelOperatorView.LabelInputs
labelSlots.labelOutput = topLevelOperatorView.LabelImages
labelSlots.labelEraserValue = topLevelOperatorView.opLabelPipeline.opLabelArray.eraser
labelSlots.labelDelete = topLevelOperatorView.opLabelPipeline.DeleteLabel
labelSlots.labelNames = topLevelOperatorView.LabelNames
self.__cleanup_fns = []
# We provide our own UI file (which adds an extra control for interactive mode)
if labelingDrawerUiPath is None:
labelingDrawerUiPath = os.path.split(
__file__)[0] + "/labelingDrawer.ui"
# Base class init
super(PixelClassificationGui,
self).__init__(parentApplet, labelSlots, topLevelOperatorView,
labelingDrawerUiPath,
topLevelOperatorView.InputImages)
self.topLevelOperatorView = topLevelOperatorView
self._currentlySavingPredictions = False
self.labelingDrawerUi.labelListView.support_merges = True
self.labelingDrawerUi.liveUpdateButton.toggled.connect(
self.setLiveUpdateEnabled)
self.initFeatSelDlg()
self.labelingDrawerUi.suggestFeaturesButton.clicked.connect(
self.show_feature_selection_dialog)
self.featSelDlg.accepted.connect(self.update_features_from_dialog)
self.labelingDrawerUi.suggestFeaturesButton.setEnabled(False)
# Always force at least two labels because it makes no sense to have less here
self.forceAtLeastTwoLabels(True)
self._initShortcuts()
self._bookmarks_window = BookmarksWindow(self,
self.topLevelOperatorView)
# FIXME: We MUST NOT enable the render manager by default,
# since it will drastically slow down the app for large volumes.
# For now, we leave it off by default.
# To re-enable rendering, we need to allow the user to render a segmentation
# and then initialize the render manager on-the-fly.
# (We might want to warn the user if her volume is not small.)
self.render = False
self._renderMgr = None
self._renderedLayers = {} # (layer name, label number)
# Always off for now (see note above)
if self.render:
try:
self._renderMgr = RenderingManager(self.editor.view3d)
except:
self.render = False
# listen to freezePrediction changes
unsub_callback = self.topLevelOperatorView.FreezePredictions.notifyDirty(
lambda *args: self.setLiveUpdateEnabled())
self.__cleanup_fns.append(unsub_callback)
self.setLiveUpdateEnabled()
