コード例 #1
0
    def addStack(self, roleIndex, laneIndex):
        """
        The user clicked the "Import Stack Files" button.
        """
        stackDlg = StackFileSelectionWidget(self)
        stackDlg.exec_()
        if stackDlg.result() != QDialog.Accepted or not stackDlg.selectedFiles:
            return

        # FIXME: ask first if stack should be internalized to project file
        # also, check prefer_2d, size/volume and presence of 'z' to determine this
        url = os.path.pathsep.join(stackDlg.selectedFiles)
        stack_info = self.instantiate_dataset_info(
            url=url, role=roleIndex, sequence_axis=stackDlg.sequence_axis)

        try:
            # FIXME: do this inside a Request
            self.parentApplet.busy = True
            inner_path = stack_info.importAsLocalDataset(
                project_file=self.get_project_file())
            internal_info = ProjectInternalDatasetInfo(
                inner_path=inner_path,
                nickname=stack_info.nickname,
                project_file=self.get_project_file())
        finally:
            self.parentApplet.busy = False
        self.addLanes([internal_info], roleIndex, laneIndex)
コード例 #2
0
    def replaceWithStack(self, roleIndex, laneIndex):
        """
        The user clicked the "Import Stack Files" button.
        """
        stackDlg = StackFileSelectionWidget(self)
        stackDlg.exec_()
        if stackDlg.result() != QDialog.Accepted:
            return
        files = stackDlg.selectedFiles
        if len(files) == 0:
            return

        info = DatasetInfo()
        info.filePath = "//".join(files)
        prefix = os.path.commonprefix(files)
        info.nickname = PathComponents(prefix).filenameBase
        # Add an underscore for each wildcard digit
        num_wildcards = len(files[-1]) - len(prefix) - len(
            os.path.splitext(files[-1])[1])
        info.nickname += "_" * num_wildcards

        # Allow labels by default if this gui isn't being used for batch data.
        info.allowLabels = (self.guiMode == GuiMode.Normal)
        info.fromstack = True

        originalNumLanes = len(self.topLevelOperator.DatasetGroup)

        if laneIndex is None:
            laneIndex = self._findFirstEmptyLane(roleIndex)
        if len(self.topLevelOperator.DatasetGroup) < laneIndex + 1:
            self.topLevelOperator.DatasetGroup.resize(laneIndex + 1)

        def importStack():
            self.guiControlSignal.emit(ControlCommand.DisableAll)
            # Serializer will update the operator for us, which will propagate to the GUI.
            try:
                self.serializer.importStackAsLocalDataset(info)
                try:
                    self.topLevelOperator.DatasetGroup[laneIndex][
                        roleIndex].setValue(info)
                except DatasetConstraintError as ex:
                    # Give the user a chance to repair the problem.
                    filename = files[0] + "\n...\n" + files[-1]
                    return_val = [False]
                    self.handleDatasetConstraintError(info, filename, ex,
                                                      roleIndex, laneIndex,
                                                      return_val)
                    if not return_val[0]:
                        # Not successfully repaired.  Roll back the changes and give up.
                        self.topLevelOperator.DatasetGroup.resize(
                            originalNumLanes)
            finally:
                self.guiControlSignal.emit(ControlCommand.Pop)

        req = Request(importStack)
        req.notify_failed(
            partial(self.handleFailedStackLoad, files, originalNumLanes))
        req.submit()
コード例 #3
0
ファイル: dataSelectionGui.py プロジェクト: jakirkham/ilastik
    def addStack(self, roleIndex, laneIndex):
        """
        The user clicked the "Import Stack Files" button.
        """
        stackDlg = StackFileSelectionWidget(self)
        stackDlg.exec_()
        if stackDlg.result() != QDialog.Accepted :
            return
        files = stackDlg.selectedFiles
        sequence_axis = stackDlg.sequence_axis
        if len(files) == 0:
            return

        info = DatasetInfo()
        info.filePath = os.path.pathsep.join( files )
        prefix = os.path.commonprefix(files)
        info.nickname = PathComponents(prefix).filenameBase
        # Add an underscore for each wildcard digit
        num_wildcards = len(files[-1]) - len(prefix) - len( os.path.splitext(files[-1])[1] )
        info.nickname += "_"*num_wildcards

        # Allow labels by default if this gui isn't being used for batch data.
        info.allowLabels = ( self.guiMode == GuiMode.Normal )
        info.fromstack = True

        originalNumLanes = len(self.topLevelOperator.DatasetGroup)

        if laneIndex is None or laneIndex == -1:
            laneIndex = len(self.topLevelOperator.DatasetGroup)
        if len(self.topLevelOperator.DatasetGroup) < laneIndex+1:
            self.topLevelOperator.DatasetGroup.resize(laneIndex+1)

        def importStack():
            self.parentApplet.busy = True
            self.parentApplet.appletStateUpdateRequested.emit()

            # Serializer will update the operator for us, which will propagate to the GUI.
            try:
                self.serializer.importStackAsLocalDataset( info, sequence_axis )
                try:
                    self.topLevelOperator.DatasetGroup[laneIndex][roleIndex].setValue(info)
                except DatasetConstraintError as ex:
                    # Give the user a chance to repair the problem.
                    filename = files[0] + "\n...\n" + files[-1]
                    return_val = [False]
                    self.handleDatasetConstraintError( info, filename, ex, roleIndex, laneIndex, return_val )
                    if not return_val[0]:
                        # Not successfully repaired.  Roll back the changes and give up.
                        self.topLevelOperator.DatasetGroup.resize(originalNumLanes)
            finally:
                self.parentApplet.busy = False
                self.parentApplet.appletStateUpdateRequested.emit()

        req = Request( importStack )
        req.notify_finished( lambda result: self.showDataset(laneIndex, roleIndex) )
        req.notify_failed( partial(self.handleFailedStackLoad, files, originalNumLanes ) )
        req.submit()
コード例 #4
0
    def addStack(self, roleIndex, laneIndex):
        """
        The user clicked the "Import Stack Files" button.
        """
        stackDlg = StackFileSelectionWidget(self)
        stackDlg.exec_()
        if stackDlg.result() != QDialog.Accepted:
            return
        files = stackDlg.selectedFiles
        sequence_axis = stackDlg.sequence_axis
        if len(files) == 0:
            return

        cwd = self.topLevelOperator.WorkingDirectory.value
        info = DatasetInfo(os.path.pathsep.join(files), cwd=cwd)

        originalNumLanes = len(self.topLevelOperator.DatasetGroup)

        if laneIndex is None or laneIndex == -1:
            laneIndex = len(self.topLevelOperator.DatasetGroup)
        if len(self.topLevelOperator.DatasetGroup) < laneIndex + 1:
            self.topLevelOperator.DatasetGroup.resize(laneIndex + 1)

        def importStack():
            self.parentApplet.busy = True
            self.parentApplet.appletStateUpdateRequested()

            # Serializer will update the operator for us, which will propagate to the GUI.
            try:
                self.serializer.importStackAsLocalDataset(info, sequence_axis)
                try:
                    self.topLevelOperator.DatasetGroup[laneIndex][
                        roleIndex].setValue(info)
                except DatasetConstraintError as ex:
                    # Give the user a chance to repair the problem.
                    filename = files[0] + "\n...\n" + files[-1]
                    return_val = [False]
                    self.parentApplet.busy = False  # required for possible fixing dialogs from DatasetConstraintError
                    self.parentApplet.appletStateUpdateRequested()
                    self.handleDatasetConstraintError(info, filename, ex,
                                                      roleIndex, laneIndex,
                                                      return_val)
                    if not return_val[0]:
                        # Not successfully repaired.  Roll back the changes and give up.
                        self.topLevelOperator.DatasetGroup.resize(
                            originalNumLanes)
            finally:
                self.parentApplet.busy = False
                self.parentApplet.appletStateUpdateRequested()

        req = Request(importStack)
        req.notify_finished(
            lambda result: self.showDataset(laneIndex, roleIndex))
        req.notify_failed(
            partial(self.handleFailedStackLoad, files, originalNumLanes))
        req.submit()
コード例 #5
0
ファイル: dataSelectionGui.py プロジェクト: ilastik/ilastik
    def addStack(self, roleIndex, laneIndex):
        """
        The user clicked the "Import Stack Files" button.
        """
        stackDlg = StackFileSelectionWidget(self)
        stackDlg.exec_()
        if stackDlg.result() != QDialog.Accepted :
            return
        files = stackDlg.selectedFiles
        sequence_axis = stackDlg.sequence_axis
        if len(files) == 0:
            return

        cwd = self.topLevelOperator.WorkingDirectory.value
        info = DatasetInfo(os.path.pathsep.join(files), cwd=cwd)

        originalNumLanes = len(self.topLevelOperator.DatasetGroup)

        if laneIndex is None or laneIndex == -1:
            laneIndex = len(self.topLevelOperator.DatasetGroup)
        if len(self.topLevelOperator.DatasetGroup) < laneIndex+1:
            self.topLevelOperator.DatasetGroup.resize(laneIndex+1)

        def importStack():
            self.parentApplet.busy = True
            self.parentApplet.appletStateUpdateRequested()

            # Serializer will update the operator for us, which will propagate to the GUI.
            try:
                self.serializer.importStackAsLocalDataset( info, sequence_axis )
                try:
                    self.topLevelOperator.DatasetGroup[laneIndex][roleIndex].setValue(info)
                except DatasetConstraintError as ex:
                    # Give the user a chance to repair the problem.
                    filename = files[0] + "\n...\n" + files[-1]
                    return_val = [False]
                    self.parentApplet.busy = False  # required for possible fixing dialogs from DatasetConstraintError
                    self.parentApplet.appletStateUpdateRequested()
                    self.handleDatasetConstraintError( info, filename, ex, roleIndex, laneIndex, return_val )
                    if not return_val[0]:
                        # Not successfully repaired.  Roll back the changes and give up.
                        self.topLevelOperator.DatasetGroup.resize(originalNumLanes)
            finally:
                self.parentApplet.busy = False
                self.parentApplet.appletStateUpdateRequested()

        req = Request( importStack )
        req.notify_finished( lambda result: self.showDataset(laneIndex, roleIndex) )
        req.notify_failed( partial(self.handleFailedStackLoad, files, originalNumLanes ) )
        req.submit()
コード例 #6
0
    def replaceWithStack(self, roleIndex, laneIndex):
        """
        The user clicked the "Import Stack Files" button.
        """
        stackDlg = StackFileSelectionWidget(self)
        stackDlg.exec_()
        if stackDlg.result() != QDialog.Accepted :
            return
        files = stackDlg.selectedFiles
        if len(files) == 0:
            return

        info = DatasetInfo()
        info.filePath = "//".join( files )
        prefix = os.path.commonprefix(files)
        info.nickname = PathComponents(prefix).filenameBase + "..."

        # Allow labels by default if this gui isn't being used for batch data.
        info.allowLabels = ( self.guiMode == GuiMode.Normal )
        info.fromstack = True

        originalNumLanes = len(self.topLevelOperator.DatasetGroup)

        if laneIndex is None:
            laneIndex = self._findFirstEmptyLane(roleIndex)
        if len(self.topLevelOperator.DatasetGroup) < laneIndex+1:
            self.topLevelOperator.DatasetGroup.resize(laneIndex+1)

        def importStack():
            self.guiControlSignal.emit( ControlCommand.DisableAll )
            # Serializer will update the operator for us, which will propagate to the GUI.
            try:
                self.serializer.importStackAsLocalDataset( info )
                try:
                    self.topLevelOperator.DatasetGroup[laneIndex][roleIndex].setValue(info)
                except DatasetConstraintError as ex:
                    # Give the user a chance to repair the problem.
                    filename = files[0] + "\n...\n" + files[-1]
                    if not self.handleDatasetConstraintError( info, filename, ex, roleIndex, laneIndex ):
                        self.topLevelOperator.DatasetGroup.resize(originalNumLanes)
            finally:
                self.guiControlSignal.emit( ControlCommand.Pop )

        req = Request( importStack )
        req.notify_failed( partial(self.handleFailedStackLoad, files, originalNumLanes ) )
        req.submit()