def get_predictions(data_dir, preprocessing_function=lambda x: x, model=model):
if isinstance(preprocessing_function, str):
if preprocessing_function == 'fliplr':
preprocessing_function = lambda x: x[..., ::-1, :]
elif preprocessing_function in ('identity', 'orig'):
preprocessing_function = lambda x: x
else:
raise ValueError('unknown preprocessing_function:\t%s' %
preprocessing_function)
val_datagen = ImageDataGenerator(**norm_params)
val_datagen.preprocessing_function = preprocessing_function
datagen_val_output = val_datagen.flow_from_directory(data_dir,
shuffle=False,
**flowfromdir_params)
gen_ = datagen_val_output
yhat = model.predict_generator(
gen_,
steps=len(gen_),
verbose=1,
)
dfdict = {"scores_%d" % nn: yy for nn, yy in enumerate(yhat.T)}
dfdict.update({"files": gen_.filenames, "label": gen_.classes})
dfres = pd.DataFrame(dfdict)
return dfres
def save_bottlebeck_features():
if os.path.exists('bottleneck_features_train.npy') and (len(
sys.argv) == 1 or sys.argv[1] != "--force"):
print("Using saved features, pass --force to save new features")
return
datagen = ImageDataGenerator(preprocessing_function=preprocess_input)
train_generator = datagen.flow_from_directory(
train_dir,
target_size=(config.img_width, config.img_height),
batch_size=config.batch_size,
class_mode="binary")
val_generator = datagen.flow_from_directory(
validation_dir,
target_size=(config.img_width, config.img_height),
batch_size=config.batch_size,
class_mode="binary")
# build the VGG16 network
model = VGG16(include_top=False, weights='imagenet')
print("Predicting bottleneck training features")
training_labels = []
training_features = []
for batch in range(5): # nb_train_samples // config.batch_size):
data, labels = next(train_generator)
training_labels.append(labels)
training_features.append(model.predict(data))
training_labels = np.concatenate(training_labels)
training_features = np.concatenate(training_features)
np.savez(open('bottleneck_features_train.npy', 'wb'),
features=training_features,
labels=training_labels)
print("Predicting bottleneck validation features")
validation_labels = []
validation_features = []
validation_data = []
for batch in range(nb_validation_samples // config.batch_size):
data, labels = next(val_generator)
validation_features.append(model.predict(data))
validation_labels.append(labels)
validation_data.append(data)
validation_labels = np.concatenate(validation_labels)
validation_features = np.concatenate(validation_features)
validation_data = np.concatenate(validation_data)
np.savez(open('bottleneck_features_validation.npy', 'wb'),
features=validation_features,
labels=validation_labels,
data=validation_data)
def Scaling(path, image_save_dir, aug_number):
datagen = ImageDataGenerator(zoom_range=0.3, fill_mode='constant') # 0.3
img = load_img(path, grayscale=True) # 这是一个PIL图像
x = img_to_array(img) # 把PIL图像转换成一个numpy数组
x = x.reshape((1, ) + x.shape) # 这是一个numpy数组
image_dir = os.path.dirname(path)
image_name = os.path.basename(path)
prefix = image_name.split(".")[0]
i = 1
for batch in datagen.flow(x,
batch_size=1,
save_to_dir=image_save_dir,
save_prefix=prefix + "_aug_" + 'Scal',
save_format='jpg'):
i += 1
if i > aug_number:
break # 否则生成器会退出循环
def Random_affine_transform(path, image_save_dir, aug_number):
datagen = ImageDataGenerator(
shear_range=3) # 水平或垂直投影变换,shear_range是角度范围 #5
img = load_img(path, grayscale=True) # 这是一个PIL图像
x = img_to_array(img) # 把PIL图像转换成一个numpy数组
x = x.reshape((1, ) + x.shape) # 这是一个numpy数组
image_dir = os.path.dirname(path)
image_name = os.path.basename(path)
prefix = image_name.split(".")[0]
i = 1
for batch in datagen.flow(x,
batch_size=1,
save_to_dir=image_save_dir,
save_prefix=prefix + "_aug_" + 'aff',
save_format='jpg'):
i += 1
if i > aug_number:
break # 否则生成器会退出循环
def Random_translation(path, image_save_dir, aug_number):
datagen = ImageDataGenerator(width_shift_range=0.05,
height_shift_range=0.05) # 0.2
img = load_img(path, grayscale=True) # 这是一个PIL图像
x = img_to_array(img) # 把PIL图像转换成一个numpy数组
x = x.reshape((1, ) + x.shape) # 这是一个numpy数组
image_dir = os.path.dirname(path)
image_name = os.path.basename(path)
prefix = image_name.split(".")[0]
i = 1
for batch in datagen.flow(x,
batch_size=1,
save_to_dir=image_save_dir,
save_prefix=prefix + "_aug_" + 'trans',
save_format='jpg'):
i += 1
if i > aug_number:
break # 否则生成器会退出循环
def data_generator(self, indeces=True, channel_mode="channels_last"):
datagen = ImageDataGenerator(
featurewise_center=False, # set input mean to 0 over the dataset
samplewise_center=False, # set each sample mean to 0
featurewise_std_normalization=
False, # divide inputs by std of the dataset
samplewise_std_normalization=False, # divide each input by its std
zca_whitening=False, # apply ZCA whitening
rotation_range=
15, # randomly rotate images in the range (degrees, 0 to 180)
width_shift_range=
0.15, # randomly shift images horizontally (fraction of total width)
height_shift_range=
0.15, # randomly shift images vertically (fraction of total height)
horizontal_flip=True, # randomly flip images
vertical_flip=True, # randomly flip images
data_format=channel_mode, # (row, col, channel) format per image
get_normal_also=indeces
) # Get indeces for unaugmented data as well
return datagen
pairs = np.array(Parallel(n_jobs=8)(delayed(loadValidationData)(fname, shape) for fname in filelist))
val_car = pairs[:,0,:,:]
val_car_mask = pairs[:,1,:,:]
val_car = val_car.reshape(val_car.shape[0], shape[0], shape[1], 1)
val_car_mask = val_car_mask.reshape(val_car.shape[0], shape[0], shape[1], 1)
del pairs
print "Time elapsed:", (time.time()-t)/60
else:
print 'Creating validation imageDataGenerators'
val_data_gen_args = dict(rescale = 1./255)
val_image_datagen = ImageDataGenerator(**val_data_gen_args)
val_mask_datagen = ImageDataGenerator(**val_data_gen_args)
val_dir = 'data/full_' if full else 'data/val_'
val_dir += str(shape)+rgb_suffix
# Provide the same seed and keyword arguments to the fit and flow methods
seed = 1
val_image_generator = val_image_datagen.flow_from_directory(
'data/'+train_prefix+str(shape)+rgb_suffix,
target_size=shape,
color_mode = color_mode,
class_mode = None,
batch_size = batch_size,
seed = seed)
# Step 3 - Flattening
classifier.add(Flatten())
# Step 4 - Fully Connected Layer
classifier.add(Dense(units=128, activation='relu'))
classifier.add(Dense(units=6, activation='softmax'))
# Step 5 - Compiling
classifier.compile(optimizer='adam',
loss='categorical_crossentropy',
metrics=['accuracy'])
from image import ImageDataGenerator
train_datagen = ImageDataGenerator(rescale=1. / 255,
shear_range=0.2,
zoom_range=0.2,
horizontal_flip=True)
dev_datagen = ImageDataGenerator(rescale=1. / 255)
test_datagen = ImageDataGenerator(rescale=1. / 255)
training_set = train_datagen.flow_from_directory(
'/home/osama/Documents/datasets/textile/dataset/training_set/',
target_size=(128, 128),
batch_size=1)
dev_set = dev_datagen.flow_from_directory(
'/home/osama/Documents/datasets/textile/dataset/dev_set',
target_size=(128, 128),
batch_size=32,
class_mode='categorical')
from keras.applications import InceptionResNetV2, Xception
from keras.models import Model, Sequential, load_model
from keras.layers import Dense, GlobalAveragePooling2D
from keras import backend as K
import matplotlib.pyplot as plt
from constants import train_data_dir, validation_data_dir
batch_size = 64
image_size = 299
train_data_path = train_data_dir
validation_data_path = validation_data_dir
train_data_generator = ImageDataGenerator(rescale=1. / 255,
contrast_stretching=False,
logarithmic=False,
gamma=False,
equalization=False,
adaptive_equalization=False)
validation_data_generator = ImageDataGenerator(rescale=1. / 255)
train_generator = train_data_generator.flow_from_directory(
train_data_path,
target_size=(image_size, image_size),
batch_size=64,
class_mode='categorical')
validation_generator = validation_data_generator.flow_from_directory(
validation_data_path,
shuffle=False,
target_size=(image_size, image_size),
nb_epoch=nb_epoch,
validation_data=(X_test, Y_test),
shuffle=True)
else:
print('Using real-time data augmentation.')
# this will do preprocessing and realtime data augmentation
datagen = ImageDataGenerator(
featurewise_center=False, # set input mean to 0 over the dataset
samplewise_center=False, # set each sample mean to 0
featurewise_std_normalization=
False, # divide inputs by std of the dataset
samplewise_std_normalization=False, # divide each input by its std
zca_whitening=False, # apply ZCA whitening
rotation_range=
45.0, # randomly rotate images in the range (degrees, 0 to 180)
width_shift_range=
0.1, # randomly shift images horizontally (fraction of total width)
height_shift_range=
0.1, # randomly shift images vertically (fraction of total height)
horizontal_flip=True, # randomly flip images
vertical_flip=False,
zerosquare=True,
zerosquareh=noises,
zerosquarew=noises,
zerosquareintern=0.0) # randomly flip images
# compute quantities required for featurewise normalization
# (std, mean, and principal components if ZCA whitening is applied)
datagen.fit(X_train)
# fit the model on the batches generated by datagen.flow()
if weighted:
datas = {'Train': train, 'Test': test, 'Validation': validation}
for data in datas.values():
data['imageId'] = data['imageId'].astype(np.uint32)
mlb = MultiLabelBinarizer()
train_label = mlb.fit_transform(train['labelId'])
y_test = np.zeros((39706, 228))
x_test = np.arange(y_test.shape[0]) + 1
width = 224
model_name = 'Xception'
# with CustomObjectScope({'f1_loss': f1_loss, 'f1_score': f1_score, 'precision': precision, 'recall': recall}):
# model = load_model(f'../models/{model_name}_f1.h5')
test_datagen = ImageDataGenerator(preprocessing_function=preprocess_input)
y_pred_test = model.predict_generator(test_datagen.flow(x_test,
'../data/test_data',
width,
y_test,
batch_size=1,
shuffle=False),
verbose=1)
np.save(f'../data/json/y_pred_{model_name}', y_pred_test)
# y_pred_test_xe = y_pred_test.copy()
# y_pred_test = (y_pred_test_xe + y_pred_test_in) / 2
y_pred_test1 = np.round(y_pred_test)
where_1 = mlb.inverse_transform(y_pred_test1)
def save_bottleneck_features(train_data_dir,
val_data_dir,
weights_path=WEIGHTS_PATH_NO_TOP,
overwrite=False):
bottleneck_features_name = "bottleneck_features.h5"
if os.path.isfile(bottleneck_features_name):
if overwrite:
print("Overwriting bottleneck_features.h5")
os.remove
else:
print(
"bottleneck_features.h5 exists, use overwrite=True to overwrite."
)
return
print(bottleneck_features_name +
"is being created...~80GB for ImageNet200")
img_width, img_height = 224, 224
nb_train_samples = 100000
nb_val_samples = 10000
state = [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
model = bottom_model(state, weights_path=weights_path)
val_datagen = ImageDataGenerator(rescale=1. / 255)
seed = 0
val_generator = val_datagen.flow_from_directory(val_data_dir,
target_size=(img_height,
img_width),
batch_size=batch_size,
shuffle=True,
seed=seed)
train_datagen = ImageDataGenerator(rescale=1. / 255)
train_generator = train_datagen.flow_from_directory(
train_data_dir,
target_size=(img_height, img_width),
batch_size=batch_size,
shuffle=True,
seed=seed)
seed = 0
np.random.seed(seed)
train_index_array = np.random.permutation(100000)[:nb_train_samples]
np.random.seed(seed)
val_index_array = np.random.permutation(10000)[:nb_val_samples]
chunk = 25
train_parts = (nb_train_samples // batch_size) // chunk
train_samples = nb_train_samples // train_parts
val_parts = (nb_val_samples // batch_size) // chunk
val_samples = nb_val_samples // val_parts
last = 0
with h5py.File(bottleneck_features_name, 'w') as hf:
train_labels = hf.create_dataset(
"train_labels",
data=np.take(train_generator.classes[:nb_train_samples],
train_index_array))
val_labels = hf.create_dataset(
"val_labels",
data=np.take(val_generator.classes[:nb_val_samples],
val_index_array))
val = hf.create_dataset("val", (nb_val_samples, 14, 14, 1024),
chunks=(64, 14, 14, 1024))
for i in range(val_parts):
print("Val done: " + str(100 * i / val_parts) + "%")
max_q_size = 1
val[i * val_samples:(i + 1) *
val_samples, :, :, :] = model.predict_generator(
val_generator,
val_samples // batch_size,
max_q_size=max_q_size)
val_generator.batch_index -= max_q_size
train = hf.create_dataset("training", (nb_train_samples, 14, 14, 1024),
chunks=(64, 14, 14, 1024))
for i in range(train_parts):
print("Train done: " + str(100 * i / train_parts) + "%")
max_q_size = 1
train[i * train_samples:(i + 1) *
train_samples, :, :, :] = model.predict_generator(
train_generator,
train_samples // batch_size,
max_q_size=max_q_size)
# recorrect for the over-calling of predict_generator by max_q_size
train_generator.batch_index -= max_q_size
class_mode=prms.class_mode,
classes=prms.classes,
seed=prms.seed)
norm_params = dict(
#rescale=prms.scaleup,
samplewise_center=prms.samplewise_center,
samplewise_std_normalization=prms.samplewise_center,
featurewise_center=False,
featurewise_std_normalization=False,
zca_whitening=False,
)
# In[23]:
train_datagen = ImageDataGenerator(**norm_params)
train_datagen.preprocessing_function = lambda x: x[..., ::-1, :] #*2**-8
datagen_train_output = train_datagen.flow_from_directory(
prms.data_train,
#stratify = prms.oversampling,
#sampling_factor=prms.sampling_factor,
#oversampling=prms.oversampling,
shuffle=False,
**flowfromdir_params)
SAMPLES_PER_EPOCH = len(datagen_train_output.filenames)
STEPS_PER_EPOCH = int(np.ceil(SAMPLES_PER_EPOCH / prms.batch_size))
##########################################
def get_predictions(data_dir, preprocessing_function=lambda x: x, model=model):
except:
last_lr = 0.001
print('\nLast learning Rate = {}'.format(last_lr))
### Compile ###
optimizer = Adam(lr=last_lr, clipnorm=5) #1e-3
model.compile(loss=['categorical_crossentropy', 'categorical_crossentropy'],
optimizer=optimizer, metrics=['accuracy'], loss_weights=[1.0, 0.4])
### AUGMENTATION ###
# This will do preprocessing and realtime data augmentation:
# data generator for train set
train_datagen = ImageDataGenerator(#horizontal_flip=True,
#brightness_range=[1.2,1.2], # 0.5>val<=2 is not working
preprocessing_function=preprocess_input
#preprocessing_function=imgaug_steroids
)
# data generator for test set
validation_datagen = ImageDataGenerator(preprocessing_function=preprocess_input)
### class_weights ###
label_wts = np.load('nasnet_data/label_wts.npy')
label_wts = np.ndarray.tolist(label_wts)
### loading file ###
# Link training data
scratch_dir = sys.argv[1]
print ('\nSCRATCH_DIR: {}\n'.format(scratch_dir))
def data_generator(self, indeces=True, channel_mode="channels_last"):
datagen = ImageDataGenerator(
data_format=channel_mode, get_normal_also=indeces
) # Get indeces for unaugmented data as well
return datagen
# model_name = 'InceptionResNetV2'
batch_size, MODEL = batch_size_model[model_name]
# model = build_model(MODEL, width, n_class, model_name, batch_size)
model_name = 'Xception'
with CustomObjectScope({
'binary_crossentropy_weight': binary_crossentropy_weight,
'f1_loss': f1_loss,
'f1_score': f1_score,
'precision': precision,
'recall': recall
}):
model = load_model(f'../models/{model_name}_bcw.h5')
# Load weights
datagen = ImageDataGenerator(preprocessing_function=preprocess_input)
val_datagen = ImageDataGenerator(preprocessing_function=preprocess_input)
losses = {
'bcw': binary_crossentropy_weight,
'f1': f1_loss,
'bc': 'binary_crossentropy'
}
configs = [('bcw', Adam(lr=1e-5)), ('f1', Adam(lr=1e-5)),
('f1', SGD(lr=5e-5, momentum=0.9, nesterov=True))]
for i, config in enumerate(configs):
print(f'{i + 1} trial')
# loss_name, opt = ('bcw', Adam(lr=3e-6))
loss_name, opt = config
reduce_lr_patience = 2
batch_y = y_val
for i, j in enumerate(tqdm(index_array)):
s_img = cv2.imread(f'../data/val_data/{j+1}.jpg')
b, g, r = cv2.split(s_img) # get b,g,r
rgb_img = cv2.merge([r, g, b]) # switch it to rgb
x = resizeAndPad(rgb_img, (width, width))
batch_x[i] = x
model_names = ['Xception_f1_59', 'Xception_f1_5945']
for model_name in model_names:
with CustomObjectScope({
'f1_loss': f1_loss,
'f1_score': f1_score,
'precision': precision,
'recall': recall
}):
model = load_model(f'../models/{model_name}.h5')
# y_pred_val = model.predict(batch_x, verbose=1)
# print(model_name, f1_score(y_val, y_pred_val))
val_datagen = ImageDataGenerator(preprocessing_function=preprocess_input)
y_pred_val = model.predict_generator(val_datagen.flow(x_val,
'../data/val_data',
width,
y_val,
batch_size=3,
shuffle=False),
verbose=1)
print(model_name, f1_score_np(y_val, y_pred_val))
###############################################################################
# Compiling the network
classifier.compile(optimizer='adam',
loss='categorical_crossentropy',
metrics=['accuracy'])
###############################################################################
# Preparing the image generator
training_set_path = "/textileconvnets/training_set/"
dev_set_path = "/textileconvnets/dev_set"
#test_set_path = "/home/osama/Documents/datasets/textile/dataset/test_set"
train_datagen = ImageDataGenerator(rescale=1. / 255,
shear_range=0.2,
zoom_range=0.2,
horizontal_flip=True,
vertical_flip=True,
rotation_range=45,
width_shift_range=0.2,
height_shift_range=0.2,
preprocessing_function=image_preprocessing)
dev_datagen = ImageDataGenerator(rescale=1. / 255,
preprocessing_function=image_preprocessing)
#test_datagen = ImageDataGenerator(rescale=1./255)
training_set = train_datagen.flow_from_directory(training_set_path,
target_size=(128, 128),
batch_size=27)
dev_set = dev_datagen.flow_from_directory(dev_set_path,
target_size=(128, 128),
elif prms.preprocessing_function == 'm1p1':
preprocessing_function = lambda x: x / 128.0 - 1
else:
raise ValueError("unknown preprocessing_function")
else:
preprocessing_function = lambda x: x
if prms.data_augmentation:
print('Using real-time data augmentation.')
train_datagen = ImageDataGenerator(
zoom_range=prms.zoom_range,
fill_mode=prms.fill_mode,
rotation_range=prms.rotation_range,
width_shift_range=prms.width_shift_range,
height_shift_range=prms.height_shift_range,
horizontal_flip=prms.horizontal_flip,
vertical_flip=prms.vertical_flip,
contrast=prms.contrast if "contrast" in prms else None,
truncate_quantile=prms.truncate_quantile,
#histeq_alpha=prms.histeq_alpha,
**norm_params)
else:
train_datagen = ImageDataGenerator(**norm_params)
val_datagen = ImageDataGenerator(**norm_params)
datagen_train_output = train_datagen.flow_from_directory(
prms.data_train,
stratify=prms.oversampling,
sampling_factor=prms.sampling_factor if prms.oversampling else None,
oversampling=prms.oversampling,
wc=(W-w)/2
Xin=np.squeeze(Xin)
Xin=np.transpose(Xin,(1,2,0))
Xout=np.zeros(Xorig.shape,dtype=Xorig.dtype)
Xout[hc:hc+h,wc:wc+w,:]=Xin
return Xout
# random data generator
datagen = ImageDataGenerator(featurewise_center=False,
samplewise_center=False,
featurewise_std_normalization=False,
samplewise_std_normalization=False,
zca_whitening=False,
rotation_range=75,
width_shift_range=0.1,
height_shift_range=0.1,
shear_range=0.05,
zoom_range=0.01,
channel_shift_range=0.0,
fill_mode='nearest',
cval=0.0,
horizontal_flip=True,
vertical_flip=True,
dim_ordering='th')
def iterate_minibatches(inputs1 , targets, batchsize, shuffle=True, augment=True):
assert len(inputs1) == len(targets)
if shuffle:
indices = np.arange(len(inputs1))
np.random.shuffle(indices)
for start_idx in range(0, len(inputs1) - batchsize + 1, batchsize):
'syringe', 't-shirt', 'table', 'tablelamp', 'teacup', 'teapot',
'teddy-bear', 'telephone', 'tennis-racket', 'tent', 'tiger', 'tire',
'toilet', 'tomato', 'tooth', 'toothbrush', 'tractor', 'traffic light',
'train', 'tree', 'trombone', 'trousers', 'truck', 'trumpet', 'tv',
'umbrella', 'van', 'vase', 'violin', 'walkie talkie', 'wheel',
'wheelbarrow', 'windmill', 'wine-bottle', 'wineglass', 'wrist-watch',
'zebra'
]
datagen = ImageDataGenerator(
featurewise_center=True, # set input mean to 0 over the dataset
samplewise_center=True, # set each sample mean to 0
featurewise_std_normalization=True, # divide inputs by std of the dataset
samplewise_std_normalization=False, # divide each input by its std
zca_whitening=False, # apply ZCA whitening
rotation_range=20, # randomly rotate images in the range (degrees, 0 to 180)
width_shift_range=
0.2, # randomly shift images horizontally (fraction of total width)
height_shift_range=
0.2, # randomly shift images vertically (fraction of total height)
horizontal_flip=True, # randomly flip images
vertical_flip=False) # randomly flip images
def load_dataset_old():
# We first define some helper functions for supporting both Python 2 and 3.
if sys.version_info[0] == 2:
from urllib import urlretrieve
import cPickle as pickle
def pickle_load(f, encoding):