def run_calculations(self):
"""Collect the settings and launch the calculation."""
statusmsg = self.statusbar.showMessage
button_ok = self.bb_ok_cancel.button(QtGui.QDialogButtonBox.Ok)
button_ok.setEnabled(False)
infile = str(self.le_infile.text())
outfile = filehandle(str(self.le_outfile.text()), 'w')
xmax = self.dsb_1.value()
ymax = self.dsb_2.value()
if (xmax + ymax) == 0:
statusmsg('Input size required!')
button_ok.setEnabled(True)
return
xtgt = self.sb_1.value()
ytgt = self.sb_2.value()
set_loglevel(self.sl_verbosity.value())
statusmsg('Parsing XML file...')
spots = StatisticsSpots(infile)
spots.set_limits(xmax=xmax, ymax=ymax)
statusmsg('Generating bitmap...')
bitmap = spots.gen_bitmap((xtgt, ytgt), delta=50)
statusmsg('Writing output file...')
savetxt(outfile, bitmap, fmt='%i')
statusmsg('Finished writing bitmap (%i x %i).' % (xtgt, ytgt))
button_ok.setEnabled(True)
def main():
"""Read Imaris export and generate bitmap."""
args = parse_arguments()
spots = StatisticsSpots(args.infile)
if args.xmax is not None:
spots.set_limits(xmax=args.xmax)
if args.ymax is not None:
spots.set_limits(ymax=args.ymax)
matrix = spots.gen_bitmap((args.size, args.size), crop=args.crop, delta=50)
np.savetxt(args.outfile, matrix, fmt='%i')