def run(self, dispatcher, tracker, domain):
api = infermedica_api.API(app_id=os.environ['APP_ID'],
app_key=os.environ['API_KEY'])
choices = {}
buttons = []
symp = tracker.get_slot('symptom')
request = infermedica_api.Diagnosis(sex='male', age='25')
symp = api.parse(symp).to_dict()
symp_id = symp['mentions'][0]['id']
request.add_symptom(symp_id, 'present')
request = api.diagnosis(request)
items = request.question.items
for choice in items:
choices[choice['id']] = choice['name']
response = request.question.text
for key, value in choices.items():
title = value
payload = ('/slot{\"choice\": ' + key + '}')
buttons.append({"title": title, "payload": payload})
# response = "Let's try this medicine"
dispatcher.utter_button_message(response, buttons)
return [SlotSet('symptom', symp)]
def run(self, dispatcher, tracker, domain):
api = infermedica_api.API(app_id='f1acb630',
app_key='41b6c31e0d5158d1dbab51958f216cfc')
choices = {}
buttons = []
symp = tracker.get_slot('symptom')
request = infermedica_api.Diagnosis(sex='male', age='25')
symp = api.parse(symp).to_dict()
symp_id = symp['mentions'][0]['id']
request.add_symptom(symp_id, 'present')
request = api.diagnosis(request)
items = request.question.items
for choice in items:
choices[choice['id']] = choice['name']
response = request.question.text
for key, value in choices.items():
title = value
request.add_symptom(key, 'present')
request = api.diagnosis(request)
text = request.question.text
buttons.append({"title": title, "payload": text})
response = "Let's try this medicine"
dispatcher.utter_button_message(response, buttons)
return [SlotSet('symptom', symp)]
def run(self, dispatcher, tracker, domain):
api = infermedica_api.API(app_id='bc1dd653',
app_key='76b11cd1b2b2e684e261346544731fb7')
choices = {}
buttons = []
symp = tracker.get_slot('symptom')
request = infermedica_api.Diagnosis(sex='male', age='25')
symp = api.parse(symp).to_dict()
symp_id = symp['mentions'][0]['id']
request.add_symptom(symp_id, 'present')
request = api.diagnosis(request)
items = request.question.items
#dispatcher.utter_message(items)
for choice in items:
choices[choice['id']] = choice['name']
for key, value in choices.items():
title = value
#payload = ('/slot{\"choice\": ' + key + '}')
#buttons.append({"title": title, "payload": payload})
request.add_symptom(key, 'present')
request = api.diagnosis(request)
text = request.question.text
# response = "Let's try this medicine"
dispatcher.utter_message(text)
#dispatcher.utter_button_message(response, buttons)
return [SlotSet('symptom', symp)]
def post(self, request):
api = infermedica_api.API(app_id='945555e1',
app_key='be2ee424c225c567086a084637a359de')
# r = infermedica_api.Diagnosis(app_id='945555e1', app_key='be2ee424c225c567086a084637a359de')
data = api.conditions_list()
# r = requests.post(url, data=json.dumps({'text': text}),headers={'Authorization': apiKey, 'Content-Type': 'application/json'})
return Response({"test": data}, status=status.HTTP_200_OK)
def run(self, dispatcher, tracker, domain):
api = infermedica_api.API(app_id='bc1dd653',
app_key='76b11cd1b2b2e684e261346544731fb7')
rr = tracker.get_slot('symptom')
request = infermedica_api.Diagnosis(sex='male', age='25')
rr = api.parse(rr).to_dict()
rr_id = rr['mentions'][0]['id']
request.conditions.to_dict()
request = api.diagnosis(request)
dispatcher.utter_message(request)
return [SlotSet('diagnosis', rr)]
def diagnosis_med():
selectedSymptom = request.form[
'symp'] #getting symptom selected by user in above step
selectedSymptom = selectedSymptom.split(',')
gender = request.form['gender']
age = request.form['age']
api = infermedica_api.API(
app_id='APP_ID', app_key='APP_KEY'
) #insert app_key and app_id you get from infermedica api
req = infermedica_api.Diagnosis(sex=gender, age=age)
for sym in selectedSymptom:
req.add_symptom(sym, 'present')
req = api.diagnosis(req)
return render_template("diagnosis_bot.html", req=req)
def symp_checker(request):
text = text1 = text2 = text3 = condition = ""
if request.method == 'POST' and 'btn' in request.POST:
age = request.POST.get("age")
gender = request.POST.get("gender")
symptons = request.POST.get("symptons")
print(symptons)
api = infermedica_api.API(app_id='<api_id>', app_key='<api_key>')
r = api.parse(symptons)
j = json.loads(str(r))
d = infermedica_api.Diagnosis(gender, age)
for i in range(len(j['mentions'])):
d.add_symptom(j['mentions'][i]['id'],
j['mentions'][i]['choice_id'],
initial=True)
d = api.diagnosis(d)
text = d.question.text
print(text)
if request.POST.get("present1"):
d.add_symptom(d.question.items[0]['id'],
d.question.items[0]['choices'][1]['id'])
d = api.diagnosis(d)
text1 = d.question.text
if request.POST.get("present2"):
d.add_symptom(d.question.items[0]['id'],
d.question.items[0]['choices'][1]['id'])
d = api.diagnosis(d)
text2 = d.question.text
condition = d.conditions[0]['name']
return render(request, "Hospital/sympton.html", {
'text': text,
'text1': text1,
'text2': text2,
'condition': condition
})
def diagnosis():
mydb = mysql.connector.connect(host="localhost",
user="******",
passwd="krisali1",
database="infermedica")
#mysql cursor object
mycursor = mydb.cursor()
#setting the api credentials, in the infermedica object
api = infermedica_api.API(app_id='ab68b198',
app_key='0a0702c5648044b31adc9d388d37841d')
#android sends json array objects and react sends a regular json
#thats why there is an if statement checking the objects
##use json dumps for android
#can use the search key for react
#have to check type because react and android send different objects
jsonResp = request.get_json()
if type(jsonResp) is list:
#in order to read the object, have to convert the json array that was sent to a json obj, then get the data
#for each key, other wise we will run into python errors
#dumps converts the json to a string
#we can take the first object because we know the android app will only send one object
jsonString = json.dumps(jsonResp[0])
#loads converts the string to a pyython json
jsonObj = json.loads(jsonString)
#get thhe data from the json
stringSearch = jsonObj['search']
stringSex = jsonObj['gender']
numAge = jsonObj['age']
else:
#the json is much simpler from react
#we can use the search keys directly
stringSearch = jsonResp['search']
stringSex = jsonResp['gender']
numAge = jsonResp['age']
#setting the sex of the user
##there are errors when you send the item in the dictionary so do an if statement for a hardcoded sex value
if stringSex == 'Male':
infer_request = infermedica_api.Diagnosis(sex='male', age=numAge)
elif stringSex == 'Female':
infer_request = infermedica_api.Diagnosis(sex='female', age=numAge)
else:
#there really shouldnt ever be an error with gender because the front end sends hard coded values
#also the front end checks for null entries as well
return 'error with gender'
#iterate through the json, and add each symptom id to the request, also set the symptom as present as apposed to absent
for jsonSymp in jsonResp:
infer_request.add_symptom(jsonSymp['SID'], 'present')
#using the infermedica library, use the diagnosis function to receive the diagnosis
infer_request = api.diagnosis(infer_request)
jsonArrData = []
#have to convert the json received in the api request to a python string
stringConditions = json.dumps(infer_request.conditions)
#then convert it to a python json
jsonConditions = json.loads(stringConditions)
#each diagnosis we receive from infermedica is referred to as a medical condition
#our database has all of the medical conditions available in infermedica
#when we receive the diagnosis( a json of conditions and their condition ids) we search our
#database for those id's, and the condition's medical information, then send that information back to the
#front end
#if there is no available diagnosis
if len(jsonConditions) == 0:
jsonArrData.append({'CID': 'no_results'})
return jsonify(jsonArrData)
for jsonTmp in jsonConditions:
#create the sql select statement using the cid we receive from infermedica as the filter in the where statement
#category is medical field, severity is medical severity, hint is advice that infermedica suggests,
#physician is the specialist for the condition
stringSQL = "SELECT category, severity, hint, physician FROM infermedica.condition_data WHERE CID = '" + jsonTmp[
'id'] + "'"
#using try except to catch sql errors
try:
mycursor.execute(stringSQL)
myresult = mycursor.fetchall()
if len(myresult) == 0:
#there should never be a case where we have 0 results, because all of the condition ids are in our database
# but better to be safe
#do nothing, skip to next item in the list
#python throws an error if you dont execute a command, so just set a dummy variable
t = 't'
else:
#add the data to our json. convert probability to a string to avoid type errors for the front end and android
jsonArrData.append({
'CID': r['id'],
'common_name': r['common_name'],
'condition_name': r['name'],
'probability': str(r['probability']),
'category': myresult[0][0],
'severity': myresult[0][1],
'hint': myresult[0][2],
'physician': myresult[0][3]
})
except:
#move on to the next item
t = 't'
#again, there really shouldnt be a case like this, unless something went wrong in ppython or sql, so keep the error checking and let
# the front end know theres an error
#otherwise send the json of conditions
if len(jsonArrData) == 0:
jsonArrData.append({'CID': 'error_python_error'})
return jsonify(jsonArrData)
else:
return jsonify(jsonArrData)
import infermedica_api
api = infermedica_api.API(app_id='bfdd6ddf',
app_key='ccd593a6b534da1593df17aa3945bfea')
# Create diagnosis object with initial patient information.
# Note that time argument is optional here as well as in the add_symptom function
request = infermedica_api.Diagnosis(sex='male', age=35)
request.add_symptom('s_21', 'present')
request.add_symptom('s_98', 'present')
request.add_symptom('s_107', 'absent')
# call diagnosis
request = api.diagnosis(request)
# Access question asked by API
print(request.question)
print(request.question.text) # actual text of the question
print(
request.question.items) # list of related evidences with possible answers
print(request.question.items[0]['id'])
print(request.question.items[0]['name'])
print(request.question.items[0]['choices']) # list of possible answers
print(request.question.items[0]['choices'][0]['id']) # answer id
print(request.question.items[0]['choices'][0]['label']) # answer label
# Access list of conditions with probabilities
print(request.conditions)
print(request.conditions[0]['id'])
print(request.conditions[0]['name'])
import json
import requests
import apiai
import sqlite3
import string
import diagnose
import urllib, json
from flask import Flask, request
import infermedica_api
INFERMEDICA_KEY = None
API_AI_KEY = None
api = infermedica_api.API(app_id='21794b8d', app_key=INFERMEDICA_KEY)
print(api.info())
app = Flask(name)
symptom_mode = False
symptom = None
gender = None
age = None
diagnosis = None
@app.route('/', methods=['GET'])
def verify():
# when the endpoint is registered as a webhook, it must echo back
# the 'hub.challenge' value it receives in the query arguments
if request.args.get("hub.mode") == "subscribe" and request.args.get("hub.challenge"):
import json
import logging
from uuid import uuid4
from flask import Blueprint, jsonify, request, Flask, Response, make_response
from flask_cors import CORS
from rasa_core.channels.channel import UserMessage
from rasa_core.channels.channel import InputChannel, OutputChannel, CollectingOutputChannel
from rasa_core.events import SlotSet
import actions
import infermedica_api
import string
import requests
import urllib
api = infermedica_api.API(app_id='bc1dd653',
app_key='76b11cd1b2b2e684e261346544731fb7')
logger = logging.getLogger()
symptom_mode = False
symptom = None
gender = None
age = None
diagnosis = None
class FileMessageStore:
DEFAULT_FILENAME = "message_store.json"
def __init__(self, filename=DEFAULT_FILENAME):
self._store = defaultdict(list)
self._filename = filename
import infermedica_api
import json
app_id = '{get your key from infermedica}'
app_key = "{get your key from infermedica}" #https://infermedica.com
api = infermedica_api.API(app_id=app_id, app_key=app_key)
symptoms_list = []
conditions_list = []
with open('symptoms.json') as symfile:
symptoms_list = json.load(symfile)
with open('conditions.json') as condfile:
conditions_list = json.load(condfile)
def initialize_request(age, sex):
"""
Creates initial diagnosis request.
:param age: Patient's age.
:param sex: Patient's gender.
:return:
"""
print("requesting " + str(age) + str(sex))
request = infermedica_api.Diagnosis(age=age, sex='male')
return request
def add_symptom_to_request_multichoice(request, id, isPresent):
present = "present" if isPresent else "absent"
request.add_symptom(id, present)
SECRET_KEY = 'a3knBL401Ajsgk3qr4NB' application = Flask(__name__) application.config.from_object(__name__) # # Create a Twilio client with credentials -- may be useful later for # sending messages without any user input # account_sid = "ACa7f75dbd1aa495c95f84c3178c87c96e" auth_token = "8aec53e337711206ef043bc8c10450ea" client = TwilioRestClient(account_sid, auth_token) #configure the api api = infermedica_api.API(app_id='30d763f7', app_key='91a0b173fc675d415ef8f782a4eff3e8') # This function gets the question we want to ask, depending on the state that we're in. The state and the # q_number are counters stored in the session object, and get reset when we're done with a user # interaction. Every time the function is called, it's passed in the current patient information. def get_question(user_input, state, q_number, a, s, symptoms, prev, conditions): # # If the user wants to restart, they can enter Q and quit. # user_input = user_input.lower() if (user_input == 'q' or user_input == 'Q'): session['state'] = 4 session['q_number'] = 0 session['symptoms'] = [] return "Thanks for using Meditext. Text hello to restart Meditext."
import infermedica_api
api = infermedica_api.API(app_id = '059ee519', app_key = '82d0384c0192bf00021a4eda9846503b')
import requests
sex = input("What is your sex? \n")
age = input("What is your age? \n")
symptoms = input("What symptoms are you feeling? \n")
headers = {
'App-Id': '059ee519',
'App-Key': '82d0384c0192bf00021a4eda9846503b',
'Content-Type': 'application/json',
}
data = '{"text": \"' +symptoms +'\"}'
response = requests.post('https://api.infermedica.com/v2/parse', headers=headers, data=data)
response = response.json()
#print(response)
#print(response['mentions'][0]['id'])
id = response['mentions'][0]['id']
choiceid = response['mentions'][0]['choice_id']
headers = {
'App-Id': '059ee519',
'App-Key': '82d0384c0192bf00021a4eda9846503b',
'Content-Type': 'application/json',
}
data = '{\n "sex": \"'+sex+'\",\n "age":'+age+',\n "evidence": [\n {"id": \"' +id + '\", "choice_id": \"'+choiceid + '\"}\n ]\n }'
import os
import sys
import json
import requests
import apiai
import sqlite3
import string
import diagnose
import urllib, json
from flask import Flask, request
import infermedica_api
api = infermedica_api.API(app_id='d50419ca',
app_key='9748ab94b22d40926c0255219081c568')
print(api.info())
app = Flask(__name__)
symptom_mode = False
symptom = None
gender = None
age = None
diagnosis = None
@app.route('/', methods=['GET'])
def verify():
# when the endpoint is registered as a webhook, it must echo back
# the 'hub.challenge' value it receives in the query arguments
def testdelete(request, patient_id, testresult_id):
patient = get_object_or_404(Patient, pk=patient_id)
testresult = TestResults.objects.get(pk=testresult_id)
testresult.delete()
return render(request, 'patientdetails/patientdetail.html',
{'patient': patient})
def Prediction(request):
testresult = TestResults.objects.all()
diagnosis = Diagnosis.objects.all()
import infermedica_api
api = infermedica_api.API(app_id='1db218b3',
app_key='55dc0c8d721d12fd115024d76e6f5dfb')
def inferform(request):
form = infer_form()
symptoms = symptom.objects.all()
return render(request, 'patientdetails/inferform.html', {
'form': form,
'symptoms': 'symptom'
})
def symplist(request):
symptomslist = api.symptoms_list()
for symp in symptomslist:
sid = (symp['id'])
import infermedica_api
import random
api = infermedica_api.API(app_id='de9f4fd9', app_key='675302b9ab8bd6ba22f8868968f74033')
request = infermedica_api.Diagnosis(sex='female', age=70)
request.add_symptom('s_285', 'absent') # weight loss
request.add_symptom('s_13', 'absent') # abdominal pain
request.add_symptom('s_156', 'absent') # nausea
request.add_symptom('s_98', 'present') # fever
request.add_symptom('s_21', 'present') # headache
request.add_symptom('s_119', 'absent') # weakness
request.add_symptom('s_88', 'absent') # shortness of breath
request.add_symptom('s_241', 'absent') # skin lesions
request = api.diagnosis(request)
# print(request)
doneDiagnosing = False
while(request.question and doneDiagnosing == False):
print("---")
print(request.question.text + " (" + request.question.type + ")")
donePresent = False
for i, item in enumerate(request.question.items):
if (request.question.type == "group_single" or request.question.type == "single"):
if donePresent == False:
choiceIndex = 0
import os
import sys
import json
import requests
import urllib, json
import infermedica_api
api = infermedica_api.API(app_id='aaccd529',
app_key='2507fff3b3104d61bca7f4eb7511dc7b')
#print(api.info())
def search_symtom(phrase):
return api.search(phrase)
def search_symtom_limit(phrase, limit):
return api.search(phrase, max_results=limit)
def search_symtom_gender(phrase, gender):
return api.search(phrase, sex=gender)
def search_symtom_gender_limit(phrase, gender, limit):
return api.search(phrase, sex=gender, max_results=limit)
def search_symtom_filter(phrase, search_filters):
return api.search(phrase, filters=search_filters)
import apiai
import sqlite3
import string
import diagnose
import search
import user
import psql
import movie_tickets
import urllib, json
from flask import Flask, request
import infermedica_api
ClientAccessToken = '58ff267796024863a39bcc78efe8e0ed'
googleApiKey = 'AIzaSyDajx797IQYukLSGkT3VwP02Qa2pyWQlEw'
api = infermedica_api.API(app_id='21794b8d',
app_key='81f5f69f0cc9d2defaa3c722c0e905bf')
#print(api.info())
app = Flask(__name__)
myUser = user.MyUser()
myMovie = movie_tickets.MyMovie()
@app.route('/', methods=['GET'])
def verify():
# when the endpoint is registered as a webhook, it must echo back
# the 'hub.challenge' value it receives in the query arguments
if request.args.get("hub.mode") == "subscribe" and request.args.get(
"hub.challenge"):
if not request.args.get(
"hub.verify_token") == os.environ["VERIFY_TOKEN"]:
import logging
from random import randint
from flask import Flask, render_template
from flask_ask import Ask, statement, question, session
import infermedica_api
import requests
import json
api = infermedica_api.API(app_id='b31c571d', app_key='240b0fc2f38307e25a7b5ab82199e961')
"""
print('Parse simple text:')
response = api.parse('i have a huge headache and couoghing today')
#print(response)
ids = []
length = len(response.mentions)
for i in range (0, length):
if (response.mentions[i].choice_id == "present"):
ids.append(response.mentions[i].id)
print ids[0]
print len(ids)
request = infermedica_api.Diagnosis(sex='male', age=35)
for i in range (0,len(ids)):
request.add_symptom(ids[i],'present')
request = api.diagnosis(request)
print "hello"
question = request.question.text
print type(question.encode('utf-8'))
print(request.question.items[0]['choices'])
print request.question.items[0]['choices'][0]['label']
