from ibl_pipeline import reference, subject, action, acquisition, data
from ingest_utils import copy_table
REF_TABLES = (
'Lab',
'LabMember',
'LabMembership',
'LabLocation',
'Project',
'ProjectLabMember'
)
for table in REF_TABLES:
print(table)
copy_table(reference, reference_ingest, table)
SUBJECT_TABLES = (
'Species',
'Strain',
'Source',
'Sequence',
'Allele',
'AlleleSequence',
'Line',
'LineAllele',
'Subject',
'BreedingPair',
'Litter',
'LitterSubject',
'Weaning',
from ibl_pipeline import reference, subject, action, acquisition, data, ephys, histology
from ingest_utils import copy_table
from table_names import *
if __name__ == '__main__':
mods = [[reference, reference_ingest, REF_TABLES],
[subject, subject_ingest, SUBJECT_TABLES],
[action, action_ingest, ACTION_TABLES],
[acquisition, acquisition_ingest, ACQUISITION_TABLES],
[data, data_ingest, DATA_TABLES]]
for (target, source, table_list) in mods:
for table in table_list:
print(table)
copy_table(target, source, table)
# ephys tables
table = 'ProbeModel'
print(table)
copy_table(ephys, ephys_ingest, table)
table = 'ProbeInsertion'
print(table)
copy_table(ephys, ephys_ingest, table, allow_direct_insert=True)
# histology tables
print('ProbeTrajectory')
histology.ProbeTrajectory.populate(suppress_errors=True,
display_progress=True)