def run():
sel = Display.getSelected()
if sel is None or sel.isEmpty():
print "Please select a treeline or areatree!"
return
t = sel[0]
if not isinstance(t, Tree):
print "The active selected object is not a treeline or areatree!"
return
# Print data
layer = Display.getFrontLayer()
m = Tree.getDeclaredMethod("getNodesToPaint", [Layer])
m.setAccessible(True)
ndsp = m.invoke(t, [layer])
print "Nodes to paint:", len(ndsp)
print "-->", ndsp
fcc = LayerSet.getDeclaredField("n_layers_color_cue")
fcc.setAccessible(True)
print "color cue value:", fcc.get(layer.getParent())
layers = layer.getParent().getColorCueLayerRange(layer)
print "Layers to paint, for color cues:", len(layers)
print "-->", layers
f = Tree.getDeclaredField("node_layer_map")
f.setAccessible(True)
ndmap = f.get(t)
nds = ndmap.get(layer)
print "Nodes in the current layer:", len(nds)
print "-->", nds
nds2 = [nd for nd in t.getRoot().getSubtreeNodes() if nd.getLayer() == layer]
print "from root, there should be:", len(nds2)
print "node layer map has:", len(ndmap), "entries"
lm = {}
for la in ndmap.keySet():
lm[la] = [layer.getParent().getLayers().contains(la), layer.getParent().indexOf(la)]
print "layers found:", lm
# copy original images for patches in layer from ini.trakem2.display import Display, Patch from shutil import copy from os import path storage = "/mnt/ssd-512/0111-8/debug/original-images/" for patch in Display.getFrontLayer().getDisplayables(Patch): filepath = patch.getImageFilePath() print filepath copy(filepath, storage)
from ini.trakem2.display import Display import MRCBZIP2 # Open image by decompressing first patch = Display.getFrontLayer().getDisplayables().get(0) imp = MRCBZIP2.decompress16bit(patch.getImageFilePath() + ".bz2") imp.show()