def post(self):
"""Adds new experiment record"""
data = self.load_data_from_request()
record = ExperimentsRecord(data=data).create(data)
db.session.commit()
return (jsonify({"control_number": record["control_number"]}), 201)
def test_experiment_serializer_should_serialize_whole_basic_record():
schema = ExperimentsElasticSearchSchema()
expected_result = {
"$schema": "http://localhost:5000/schemas/records/experiments.json",
"_collections": ["Experiments"],
"project_type": ["experiment"],
}
experiment = ExperimentsRecord(faker.record("exp", data={"experiment":
{}}))
result = schema.dump(experiment).data
assert result == expected_result
def test_experiment_serializer_populates_normalized_names_and_subgroups(
mock_experiment_literature_table, ):
schema = ExperimentsElasticSearchSchema()
data = {
"accelerator": {
"value": "ACC"
},
"collaboration": {
"curated_relation": False,
"value": "COLLABORATION",
"subgroup_names": ["subgroup 1", "subgroup 2"],
},
"experiment": {
"short_name": "EXP SHORT NAME",
"value": "Experiment value"
},
"institutions": [{
"record": {
"$ref": "http://labs.inspirehep.net/api/institutions/902725"
},
"value": "INST_VALUE",
"curated_relation": True,
}],
"legacy_name":
"LEGACY-NAME",
"name_variants": ["NAME_V1", "NAME_V2", "NAME_V3"],
}
expected_normalized_name_variants = [
"COLLABORATION",
"NAME_V1",
"NAME_V2",
"NAME_V3",
]
expected_normalized_subgroups = ["subgroup 1", "subgroup 2"]
experiment = ExperimentsRecord(faker.record("exp", data))
result = schema.dump(experiment).data
assert result[
"normalized_name_variants"] == expected_normalized_name_variants
assert result["normalized_subgroups"] == expected_normalized_subgroups
def test_experiment_serializer_populates_experiment_suggest(
mock_experiment_literature_table,
):
schema = ExperimentsElasticSearchSchema()
data = {
"accelerator": {"value": "ACC"},
"collaboration": {"curated_relation": False, "value": "COLLABORATION"},
"experiment": {"short_name": "EXP SHORT NAME", "value": "Experiment value"},
"institutions": [
{
"record": {
"$ref": "http://labs.inspirehep.net/api/institutions/902725"
},
"value": "INST_VALUE",
"curated_relation": True,
}
],
"legacy_name": "LEGACY-NAME",
"long_name": "{Long Name}",
"name_variants": ["NAME_V1", "NAME_V2", "NAME_V3"],
}
expected_experiment_suggest = [
{"input": "ACC", "weight": 1},
{"input": "COLLABORATION", "weight": 1},
{"input": "EXP SHORT NAME", "weight": 1},
{"input": "Experiment value", "weight": 1},
{"input": "INST_VALUE", "weight": 1},
{"input": "{Long Name}", "weight": 1},
{"input": "NAME_V1", "weight": 1},
{"input": "NAME_V2", "weight": 1},
{"input": "NAME_V3", "weight": 1},
{"input": "LEGACY-NAME", "weight": 5},
]
experiment = ExperimentsRecord(faker.record("exp", data))
result = schema.dump(experiment).data["experiment_suggest"]
assert result == expected_experiment_suggest