def create_our_record(recid):
old_record = get_record(recid)
for subfield in old_record.find_subfields('100__u'):
if subfield.value.lower() == 'lisbon, lifep':
subfield.value = 'LIP, Lisbon'
for subfield in old_record.find_subfields('700__u'):
if subfield.value.lower() == 'lisbon, lifep':
subfield.value = 'LIP, Lisbon'
try:
instances_100 = old_record['100']
except KeyError:
instances_100 = []
try:
instances_700 = old_record['700']
except KeyError:
instances_700 = []
record = BibRecord(recid=recid)
record['100'] = instances_100
record['700'] = instances_700
return record.to_xml()
def create_our_record(recid, bibupload, bibupload2):
old_record = get_record(recid)
try:
instances_084 = old_record['084']
except KeyError:
instances_084 = []
to_remove_instances_650 = []
modified = False
for field in old_record['650']:
if 'PACS' in field.get_subfield_values('2'):
assert len(field.subfields) >= 2
assert len(field.subfields) -1 == len(field.get_subfield_values('a'))
to_remove_instances_650.append(field)
for value in field.get_subfield_values('a'):
sub_2 = BibRecordSubField(code='2', value='PACS')
sub_a = BibRecordSubField(code='a', value=value)
f = BibRecordField(subfields=[sub_2, sub_a])
instances_084.append(f)
modified = True
if not modified:
return None
# Remove wrong indicator
for field in instances_084[:]:
if field.ind1 == '1' and field.ind2 == '7' \
and 'PACS' in field.get_subfield_values('2'):
field.ind1 = ' '
field.ind2 = ' '
record = BibRecord(recid=recid)
record['084'] = set(instances_084)
bibupload.add(record.to_xml())
if to_remove_instances_650:
record = BibRecord(recid=recid)
record['650'] = to_remove_instances_650
bibupload2.add(record.to_xml())
def append_to_record(rec_id, doi, published_date):
"""Attempt to add a DOI to a record.
Also adds 930 'Published' if not already there and
adds the extrapolated PubNote data to 773.
"""
record = get_record(recid=rec_id)
new_record = BibRecord(rec_id)
# make sure that there is no DOI for this record
if not record_has_doi(record, rec_id, doi):
# create new record with only 0247 field, that we will append
# to the existing record with bibupload function
new_field = new_record.add_field('0247_')
new_field.add_subfield('2', 'DOI')
new_field.add_subfield('a', doi.decode('utf-8'))
_print('DOI to be added: ' + doi + ' to the record ' + str(rec_id), 3)
if not is_marked_published(record):
new_field_980 = new_record.add_field('980__')
new_field_980.add_subfield('a', 'Published')
append_773 = False
field_773 = record.find_fields('773__')
new_field_773 = create_pubnote(doi, published_date)
if len(field_773) == 0:
append_773 = True
_print("No pubnote, adding field 773 to record...", 7)
elif not is_pubnote_identical(field_773, new_field_773):
append_773 = True
_print(
"Field 773 already exists for record, " +
"differs from DOI extract", 3)
else:
_print(
"Field 773 already exists, does not " + "contradict DOI extract.",
6)
if append_773:
new_field = new_record.add_field('773__')
for code, value in new_field_773.iteritems():
new_field.add_subfield(code, value)
field_260 = record.find_subfields("260__c")
if len(field_260) == 0:
# We add 260__c publication date
new_field = new_record.add_field('260__')
new_field.add_subfield("c", published_date)
if len(new_record.record) > 1:
return new_record.to_xml()
else:
return None
def append_to_record(rec_id, doi, published_date):
"""Attempt to add a DOI to a record.
Also adds 930 'Published' if not already there and
adds the extrapolated PubNote data to 773.
"""
record = get_record(recid=rec_id)
new_record = BibRecord(rec_id)
# make sure that there is no DOI for this record
if not record_has_doi(record, rec_id, doi):
# create new record with only 0247 field, that we will append
# to the existing record with bibupload function
new_field = new_record.add_field('0247_')
new_field.add_subfield('2', 'DOI')
new_field.add_subfield('a', doi.decode('utf-8'))
_print('DOI to be added: ' + doi +
' to the record ' + str(rec_id), 3)
if not is_marked_published(record):
new_field_980 = new_record.add_field('980__')
new_field_980.add_subfield('a', 'Published')
append_773 = False
field_773 = record.find_fields('773__')
new_field_773 = create_pubnote(doi, published_date)
if len(field_773) == 0:
append_773 = True
_print("No pubnote, adding field 773 to record...", 7)
elif not is_pubnote_identical(field_773, new_field_773):
append_773 = True
_print("Field 773 already exists for record, " +
"differs from DOI extract", 3)
else:
_print("Field 773 already exists, does not " +
"contradict DOI extract.", 6)
if append_773:
new_field = new_record.add_field('773__')
for code, value in new_field_773.iteritems():
new_field.add_subfield(code, value)
field_260 = record.find_subfields("260__c")
if len(field_260) == 0:
# We add 260__c publication date
new_field = new_record.add_field('260__')
new_field.add_subfield("c", published_date)
if len(new_record.record) > 1:
return new_record.to_xml()
else:
return None
class APSRecord(object):
"""
Class representing a record to harvest.
"""
def __init__(self, recid=None, doi=None, date=None, last_modified=None):
self.recid = recid
self.doi = doi or get_doi_from_record(self.recid)
self.date = date
self.record = BibRecord(recid or None)
self.last_modified = last_modified
def add_metadata(self, marcxml_file):
"""
Adds metadata from given file. Removes any DTD definitions
and translates the metadata to MARCXML using BibConvert.
"""
if marcxml_file:
self.record = create_records_from_file(marcxml_file)
if self.recid:
self.record['001'] = [BibRecordControlField(str(self.recid))]
def add_metadata_by_string(self, marcxml_text):
"""
Adds metadata from given text.
"""
if marcxml_text:
self.record = create_records_from_string(marcxml_text)
if self.recid:
self.record['001'] = [BibRecordControlField(str(self.recid))]
def add_fft(self, fulltext_file, hidden=True):
"""
Adds FFT information as required from given fulltext.
"""
fft = self.record.add_field("FFT__")
fft.add_subfield('a', fulltext_file)
if hidden:
fft.add_subfield('t', CFG_APSHARVEST_FFT_DOCTYPE)
fft.add_subfield('o', "HIDDEN")
else:
fft.add_subfield('t', "INSPIRE-PUBLIC")
def to_xml(self):
return self.record.to_xml()
class APSRecord(object):
"""
Class representing a record to harvest.
"""
def __init__(self, recid, doi=None, date=None, last_modified=None):
self.recid = recid
self.doi = doi or get_doi_from_record(self.recid)
self.date = date
self.record = BibRecord(recid or None)
self.last_modified = last_modified
def add_metadata(self, marcxml_file):
"""
Adds metadata from given file. Removes any DTD definitions
and translates the metadata to MARCXML using BibConvert.
"""
if marcxml_file:
self.record = create_records_from_file(marcxml_file)
if self.recid:
self.record['001'] = [BibRecordControlField(str(self.recid))]
def add_metadata_by_string(self, marcxml_text):
"""
Adds metadata from given text.
"""
if marcxml_text:
self.record = create_records_from_string(marcxml_text)
if self.recid:
self.record['001'] = [BibRecordControlField(str(self.recid))]
def add_fft(self, fulltext_file, hidden=True):
"""
Adds FFT information as required from given fulltext.
"""
fft = self.record.add_field("FFT__")
fft.add_subfield('a', fulltext_file)
if hidden:
fft.add_subfield('t', CFG_APSHARVEST_FFT_DOCTYPE)
fft.add_subfield('o', "HIDDEN")
else:
fft.add_subfield('t', "INSPIRE-PUBLIC")
def to_xml(self):
return self.record.to_xml()
def append_doi(recID, doi):
record = get_record(recid=recID)
try:
# make sure that there is no DOI for this record
if record.find_subfields('0247_a'):
messages.append('Record %s already has a doi' % recID)
if record.find_subfields('0247_a')[0].value != doi:
errors.append('DOI of %s record is different than the new doi (%s)!'
% (recID, doi))
else:
# create new record with only 0247 field, that we will append
# to the existing record with bibupload function
new_record = BibRecord(recID)
new_field = new_record.add_field('0247_')
new_field.add_subfield('a', doi.decode('utf-8'))
new_field.add_subfield('2', 'DOI')
messages.append('Successfully inserted the doi: ' + doi +
' to the record ' + str(recID))
return new_record.to_xml()
except Exception, e:
traceback.print_exc()
errors.append('Unknown error: ' + repr(e))
