def test_sweepFiles_fileNotDirectory(self):
with self.assertRaises(IOError):
io.sweepFiles('phylodist/test.py')
def test_sweepFiles_nonExistentDir(self):
with self.assertRaises(IOError):
io.sweepFiles('directory_does_not_exist')
def test_sweepFiles_directoryType(self):
with self.assertRaises(TypeError):
io.sweepFiles(42)
def test_sweepFiles_metadataType(self):
with self.assertRaises(TypeError):
io.sweepFiles('examples', metadata=41)
def test_sweepFiles_values(self):
pdSD = io.sweepFiles('examples')
# check the length of the dictionary
self.assertEquals(len(pdSD), 2)
# verify the sample key names are correct
for key in pdSD.keys():
self.assertIn(key, ['LakWasMeta9_HOW4', 'LakWasMeta9_HOW4_2'])
# spot check specific values in the dictionary's data frame
self.assertEquals(
pdSD['LakWasMeta9_HOW4'].at[97, 'locus_tag'], 'Ga0066407_15607121'
)
self.assertEquals(
pdSD['LakWasMeta9_HOW4_2'].at[1013, 'locus_tag'],
'Ga0066495_1323232'
)
def test_sweepFiles_values(self):
pdSD = io.sweepFiles('examples')
# check the length of the dictionary
self.assertEquals(len(pdSD), 2)
# verify the sample key names are correct
for key in pdSD.keys():
self.assertIn(key, ['LakWasMeta9_HOW4', 'LakWasMeta9_HOW4_2'])
# spot check specific values in the dictionary's data frame
self.assertEquals(
pdSD['LakWasMeta9_HOW4'].at[97, 'locus_tag'], 'Ga0066407_15607121'
)
self.assertEquals(
pdSD['LakWasMeta9_HOW4_2'].at[1013, 'locus_tag'],
'Ga0066495_1323232'
)
def test_sweepFiles_values(self):
pdSD = io.sweepFiles('examples')
# check the length of the dictionary
self.assertEquals(len(pdSD), 2)
# verify the sample key names are correct
for key in pdSD.keys():
self.assertIn(key, ['LakWasMeta9_HOW4', 'LakWasMeta9_HOW4_2'])
# spot check specific values in the dictionary's data frame
self.assertEquals(
pdSD['LakWasMeta9_HOW4'].at[97, 'locus_tag'], 'Ga0066407_15607121'
)
self.assertEquals(
pdSD['LakWasMeta9_HOW4_2'].at[1013, 'locus_tag'],
'Ga0066495_1323232'
)
def test_sweepFiles_metadataType(self):
with self.assertRaises(TypeError):
io.sweepFiles('examples', metadata=41)
def test_sweepFiles_directoryType(self):
with self.assertRaises(TypeError):
io.sweepFiles(42)
def test_sweepFiles_nonExistentDir(self):
with self.assertRaises(IOError):
io.sweepFiles('directory_does_not_exist')
def test_sweepFiles_fileNotDirectory(self):
with self.assertRaises(IOError):
io.sweepFiles('phylodist/test.py')
def test_sweepFiles_metadataType(self):
with self.assertRaises(TypeError):
io.sweepFiles('examples', metadata=41)
def test_sweepFiles_directoryType(self):
with self.assertRaises(TypeError):
io.sweepFiles(42)
def test_sweepFiles_nonExistentDir(self):
with self.assertRaises(IOError):
io.sweepFiles('directory_does_not_exist')