def _get_serial_range(sel_keyword, map, start, stop):
from iotbx.pdb import utils_base_256_ordinal as o
o_start = None
o_stop = None
if (start is not None and start.count(" ") != len(start)):
o_start = o(start)
if (stop is not None and stop.count(" ") != len(stop)):
o_stop = o(stop)
if (o_start is not None and o_stop is not None and o_start > o_stop):
raise RuntimeError("range with first index > last index: %s %s:%s" %
(sel_keyword, start, stop))
result = []
for s, iselection in map.items():
os = o(s)
if (o_start is not None and os < o_start): continue
if (o_stop is not None and os > o_stop): continue
result.append(iselection)
return result
def get_resid_range(self, start, stop):
from iotbx.pdb import utils_base_256_ordinal as o
o_start = None
o_stop = None
if (start is not None and start.count(" ") != len(start)):
o_start = o(resid_shift(start))
if (stop is not None and stop.count(" ") != len(stop)):
o_stop = o(resid_shift(stop))
if (o_start is not None and o_stop is not None and o_start > o_stop):
raise RuntimeError(
"range with first index > last index: resid %s:%s" %
(start, stop))
result = []
for s, iselection in self.resid.items():
os = o(s)
if (o_start is not None and os < o_start): continue
if (o_stop is not None and os > o_stop): continue
result.append(iselection)
return result
def get_resid_range(self, start, stop):
from iotbx.pdb import utils_base_256_ordinal as o
o_start = None
o_stop = None
if (start is not None and start.count(" ") != len(start)):
o_start = o(resid_shift(start))
if (stop is not None and stop.count(" ") != len(stop)):
o_stop = o(resid_shift(stop))
if ( o_start is not None
and o_stop is not None
and o_start > o_stop):
raise RuntimeError(
"range with first index > last index: resid %s:%s" % (start, stop))
result = []
for s,iselection in self.resid.items():
os = o(s)
if (o_start is not None and os < o_start): continue
if (o_stop is not None and os > o_stop): continue
result.append(iselection)
return result
def _get_serial_range(sel_keyword, map, start, stop):
from iotbx.pdb import utils_base_256_ordinal as o
o_start = None
o_stop = None
if (start is not None and start.count(" ") != len(start)):
o_start = o(start)
if (stop is not None and stop.count(" ") != len(stop)):
o_stop = o(stop)
if ( o_start is not None
and o_stop is not None
and o_start > o_stop):
raise RuntimeError(
"range with first index > last index: %s %s:%s" % (
sel_keyword, start, stop))
result = []
for s,iselection in map.items():
os = o(s)
if (o_start is not None and os < o_start): continue
if (o_stop is not None and os > o_stop): continue
result.append(iselection)
return result
