def test_two_similar_tools(self):
w = WorkflowBuilder("testTwoToolsWithSameId")
w.input("inp", str)
w.step("stp1", TestTool(testtool=w.inp))
w.step("stp2", TestToolV2(testtool=w.inp))
wf_wdl, _ = WdlTranslator.translate_workflow(w)
expected = """\
version development
import "tools/TestTranslationtool.wdl" as T
import "tools/TestTranslationtool_v0_0_2.wdl" as T2
workflow testTwoToolsWithSameId {
input {
String inp
}
call T.TestTranslationtool as stp1 {
input:
testtool=inp
}
call T2.TestTranslationtool as stp2 {
input:
testtool=inp
}
}"""
self.assertEqual(expected, wf_wdl.get_string())
def test_switch(self):
from janis_unix import Echo, Cat
w = WorkflowBuilder("switchTest")
w.input("inp", int, value=2)
w.input("inp1", str, value="Hello")
w.input("inp2", str, value="Hi there")
w.conditional(
"echoswitch",
[
(w.inp > 1, Echo(inp=w.inp1)),
(w.inp.equals(1), Echo(inp="tasy case")),
Echo(inp=w.inp2),
],
)
w.output("out", source=w.echoswitch)
_, wdl_tools = WdlTranslator.translate_workflow(w)
expected = """\
version development
import "echo_v1_0_0.wdl" as E
workflow echoswitch {
input {
Int cond_inp
String switch_case_1_inp
String? switch_case_2_inp = "tasy case"
String switch_case_3_inp
}
if ((cond_inp > 1)) {
call E.echo as switch_case_1 {
input:
inp=switch_case_1_inp
}
}
if (((cond_inp == 1) && !((cond_inp > 1)))) {
call E.echo as switch_case_2 {
input:
inp=select_first([switch_case_2_inp, "tasy case"])
}
}
if (!(((cond_inp > 1) || (cond_inp == 1)))) {
call E.echo as switch_case_3 {
input:
inp=switch_case_3_inp
}
}
output {
File out = select_first([switch_case_1.out, switch_case_2.out, switch_case_3.out])
}
}"""
echoswitch = wdl_tools["echoswitch"].get_string()
self.assertEqual(expected, echoswitch)
