コード例 #1
0
ファイル: SystemPanel.py プロジェクト: sedjrodonan/lositan
 def __init__(self, chartFun, isTemporal = False):
     self.isTemporal = isTemporal
     JPanel()
     #self.setBackground(Color.LIGHT_GRAY)
     self.chartFun = chartFun
     self.enableChartFun = False
     self.setLayout(GridLayout(6,2))
     self.add(JLabel('CPU Cores'))
     nprocs = ManagementFactory.getOperatingSystemMXBean().getAvailableProcessors()
     procvals = sorted(set([nprocs, 1, 2, 4, 8, 16, 32, 64, 128]))
     cores = JComboBox(procvals)
     cores.setSelectedIndex(procvals.index(nprocs))
     cores.setMaximumSize(cores.getPreferredSize())
     self.cores = cores
     self.add(self.cores)
     self.add(JLabel('# of sims (x1000)  '))
     numSims = JComboBox(
         map(lambda x: str((10+x)*5), range(10)) +
         map(lambda x: str(x*100), range(1,11))
     )
     numSims.setMaximumSize(numSims.getPreferredSize())
     self.numSims = numSims
     self.add(self.numSims)
     if isTemporal:
         self.add(JLabel('"Neutral" Ne'))
         self.neutral = JCheckBox()
         self.neutral.addActionListener(self)
         self.add(self.neutral)
     else:
         self.add(JLabel('"Neutral" mean Fst'))
         self.neutral = JCheckBox()
         self.neutral.addActionListener(self)
         self.add(self.neutral)
         self.add(JLabel('Force mean Fst'))
         self.force = JCheckBox()
         self.force.addActionListener(self)
         self.add(self.force)
     self.add(JLabel('Confidence interval '))
     ci = JComboBox(['0.95', '0.99', '0.995'])
     ci.addItemListener(self)
     ci.setMaximumSize(cores.getPreferredSize())
     self.ci = ci
     self.add(self.ci)
     self.add(JLabel('False Disc. Rate'))
     fdr = JFormattedTextField(
         NumberFormat.getNumberInstance(Locale.US))
     fdr.setValue(0.1)
     fdr.addPropertyChangeListener(self)
     self.add(fdr)
     self.fdr = fdr
コード例 #2
0
ファイル: SystemPanel.py プロジェクト: samitha/lositan
 def __init__(self, chartFun, isTemporal = False):
     self.isTemporal = isTemporal
     JPanel()
     #self.setBackground(Color.LIGHT_GRAY)
     self.chartFun = chartFun
     self.enableChartFun = False
     self.setLayout(GridLayout(6,2))
     self.add(JLabel('CPU Cores'))
     cores = JComboBox(['1', '2', '4', '8', '16', '32', '64', '128'])
     nprocs = ManagementFactory.getOperatingSystemMXBean().getAvailableProcessors()
     pos = min([7, log(ceil(nprocs)) / log(2)])
     cores.setSelectedIndex(int(pos))
     cores.setMaximumSize(cores.getPreferredSize())
     self.cores = cores
     self.add(self.cores)
     self.add(JLabel('# of sims (x1000)  '))
     numSims = JComboBox(
         map(lambda x: str((10+x)*5), range(10)) +
         map(lambda x: str(x*100), range(1,11))
     )
     numSims.setMaximumSize(numSims.getPreferredSize())
     self.numSims = numSims
     self.add(self.numSims)
     if isTemporal:
         self.add(JLabel('"Neutral" Ne'))
         self.neutral = JCheckBox()
         self.neutral.addActionListener(self)
         self.add(self.neutral)
     else:
         self.add(JLabel('"Neutral" mean Fst'))
         self.neutral = JCheckBox()
         self.neutral.addActionListener(self)
         self.add(self.neutral)
         self.add(JLabel('Force mean Fst'))
         self.force = JCheckBox()
         self.force.addActionListener(self)
         self.add(self.force)
     self.add(JLabel('Confidence interval '))
     ci = JComboBox(['0.95', '0.99', '0.995'])
     ci.addItemListener(self)
     ci.setMaximumSize(cores.getPreferredSize())
     self.ci = ci
     self.add(self.ci)
     self.add(JLabel('False Disc. Rate'))
     fdr = JFormattedTextField(
         NumberFormat.getNumberInstance(Locale.US))
     fdr.setValue(0.1)
     fdr.addPropertyChangeListener(self)
     self.add(fdr)
     self.fdr = fdr
コード例 #3
0
        def __init__(self, currency, noDecimals):
	    import java.lang.Double as Double
	    import java.text.NumberFormat as NumberFormat
	    import javax.swing.table.DefaultTableCellRenderer as DefaultTableCellRenderer
	    import com.infinitekind.moneydance.model.CurrencyType as CurrencyType
            super(DefaultTableCellRenderer, self).__init__()
            self.noDecimals = noDecimals
            ct = currency.getTable()
            relativeToName = currency.getParameter(CurrencyType.TAG_RELATIVE_TO_CURR)
            if relativeToName != None:
                self.relativeTo = ct.getCurrencyByIDString(relativeToName)
            else:
                self.relativeTo = ct.getBaseType()
            self.noDecimalFormatter = NumberFormat.getNumberInstance()
            self.noDecimalFormatter.setMinimumFractionDigits(0)
            self.noDecimalFormatter.setMaximumFractionDigits(0)
コード例 #4
0
ファイル: report.py プロジェクト: ElbinP/grinder-maven-plugin
 def readGrinderOutFile(self, summaryData, reportDir):
     # reset the test directory
     # TODO this logic does not belong in a method named 'readGrinderOutFile' !
     if path.isdir(reportDir):
         logger.warn("Deleting previous report directory '" + reportDir + "'.")
         shutil.rmtree(reportDir)
     if path.isfile(reportDir):
         logger.warn("Pre-existing file '" + reportDir + "' collides with report dir name.  Deleting.")
         os.remove(reportDir)
     os.mkdir(reportDir)
     templates = MavenUtilities.getCurrentDir() + os.sep + classpathtool.GA_NAME + os.sep + "templates" 
     shutil.copytree(templates, reportDir + os.sep + "templates")
     analyzerPlugin = ga.constants.VORPAL.getPlugin("analyzer")
     # add the configured response time thresholds to the analyzer columns
     if CONFIG.useThresholds and len(CONFIG.rtimeThresholds) > 0:
         numberFormat = NumberFormat.getNumberInstance()
         list = CONFIG.rtimeThresholds            
         thresholds = list[:len(list) - 1]
         # the first group
         colName = "under %s sec" % numberFormat.format(thresholds[0])
         analyzerPlugin.addColumnName(colName)
         # the middle groups
         if len(thresholds) > 1:
             for i in range(len(thresholds) - 1):
                 colName = "%s to %s sec" % (numberFormat.format(thresholds[i]), numberFormat.format(thresholds[i + 1]))
                 analyzerPlugin.addColumnName(colName)
         # the last group
         name = "over %s sec" % numberFormat.format(thresholds[len(thresholds) - 1])
         analyzerPlugin.addColumnName(name)
     logger.warn("Starting log analysis.")
     for line in summaryData.getTestDataLines():
         if CONFIG.isShowTransactionData():
             if line.startswith("Test") or line.startswith("(Test"):
                 row = self.getRow(line)
                 logger.debug("Adding row name %s" % row.getTxName())
                 analyzerPlugin.addDataRow(row)
         if line.startswith("Totals"):
             analyzerPlugin.setTotalsRow(self.getRow(line, True))
コード例 #5
0
ファイル: EmpiricalPanel.py プロジェクト: samitha/lositan
    def __init__(self, menuHandles, manager, isDominant, systemPanel, isTemporal=False):
        self.systemPanel = systemPanel
        self.knownPops = 0
        self.ignoreChanges = True
        JPanel()
        self.menuHandles = menuHandles
        self.isDominant = isDominant
        self.isTemporal = isTemporal
        if isDominant:
            self.setLayout(GridLayout(8, 2))
        else:
            self.setLayout(GridLayout(5, 2))
        if isTemporal:
            self.add(JLabel("Ne"))
            ne = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
            ne.addPropertyChangeListener(self)
            self.ne = ne
            self.add(ne)
        else:
            self.add(JLabel("Attempted Fst"))
            fst = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
            fst.addPropertyChangeListener(self)
            self.fst = fst
            self.add(fst)
        self.add(JLabel("Expected total pops"))
        pops = JFormattedTextField(NumberFormat.getIntegerInstance(Locale.US))
        pops.addPropertyChangeListener(self)
        # self.pops = JComboBox(['1', '2', '4', '8', '12', '16'])
        self.pops = pops
        self.add(self.pops)
        if not isDominant and not isTemporal:
            self.add(JLabel("Mutation model"))
            self.mut = JComboBox(["Infinite Alleles", "Stepwise"])
            self.mut.addItemListener(self)
            self.add(self.mut)
        self.add(JLabel("Subsample size"))
        sampleSize = JFormattedTextField(NumberFormat.getIntegerInstance(Locale.US))
        sampleSize.addPropertyChangeListener(self)
        self.sampleSize = sampleSize
        self.add(self.sampleSize)
        if isDominant:
            self.add(JLabel("Theta"))
            theta = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
            theta.addPropertyChangeListener(self)
            self.theta = theta
            self.add(theta)
            theta.setValue(0.1)

            self.add(JLabel("Beta-a"))
            beta1 = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
            beta1.addPropertyChangeListener(self)
            self.beta1 = beta1
            self.add(beta1)
            beta1.setValue(0.25)

            self.add(JLabel("Beta-b"))
            beta2 = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
            beta2.addPropertyChangeListener(self)
            self.beta2 = beta2
            self.add(beta2)
            beta2.setValue(0.25)

            self.add(JLabel("Critical frequency"))
            crit = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
            crit.addPropertyChangeListener(self)
            self.crit = crit
            self.add(crit)
            crit.setValue(0.99)

        run = JButton("Run!")
        run.addActionListener(manager)
        run.setActionCommand("RunFDist")
        self.run = run
        self.add(run)
        cancel = JButton("Stop")
        cancel.addActionListener(manager)
        cancel.setActionCommand("CancelFDist")
        self.cancel = cancel
コード例 #6
0
    def __init__(self,
                 menuHandles,
                 manager,
                 isDominant,
                 systemPanel,
                 isTemporal=False):
        self.systemPanel = systemPanel
        self.knownPops = 0
        self.ignoreChanges = True
        JPanel()
        self.menuHandles = menuHandles
        self.isDominant = isDominant
        self.isTemporal = isTemporal
        if isDominant:
            self.setLayout(GridLayout(8, 2))
        else:
            self.setLayout(GridLayout(5, 2))
        if isTemporal:
            self.add(JLabel('Ne'))
            ne = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
            ne.addPropertyChangeListener(self)
            self.ne = ne
            self.add(ne)
            self.add(JLabel('Expected total samples'))
        else:
            self.add(JLabel('Attempted Fst'))
            fst = JFormattedTextField(NumberFormat.getNumberInstance(
                Locale.US))
            fst.addPropertyChangeListener(self)
            self.fst = fst
            self.add(fst)
            self.add(JLabel('Expected total pops'))
        pops = JFormattedTextField(NumberFormat.getIntegerInstance(Locale.US))
        pops.addPropertyChangeListener(self)
        # self.pops = JComboBox(['1', '2', '4', '8', '12', '16'])
        self.pops = pops
        self.add(self.pops)
        if not isDominant and not isTemporal:
            self.add(JLabel('Mutation model'))
            self.mut = JComboBox(['Infinite Alleles', 'Stepwise'])
            self.mut.addItemListener(self)
            self.add(self.mut)
        else:
            self.mut = None
        self.add(JLabel('Subsample size'))
        sampleSize = JFormattedTextField(
            NumberFormat.getIntegerInstance(Locale.US))
        sampleSize.addPropertyChangeListener(self)
        self.sampleSize = sampleSize
        self.add(self.sampleSize)
        if isDominant:
            self.add(JLabel('Theta'))
            theta = JFormattedTextField(
                NumberFormat.getNumberInstance(Locale.US))
            theta.addPropertyChangeListener(self)
            self.theta = theta
            self.add(theta)
            theta.setValue(0.1)

            self.add(JLabel('Beta-a'))
            beta1 = JFormattedTextField(
                NumberFormat.getNumberInstance(Locale.US))
            beta1.addPropertyChangeListener(self)
            self.beta1 = beta1
            self.add(beta1)
            beta1.setValue(0.25)

            self.add(JLabel('Beta-b'))
            beta2 = JFormattedTextField(
                NumberFormat.getNumberInstance(Locale.US))
            beta2.addPropertyChangeListener(self)
            self.beta2 = beta2
            self.add(beta2)
            beta2.setValue(0.25)

            self.add(JLabel('Critical frequency'))
            crit = JFormattedTextField(
                NumberFormat.getNumberInstance(Locale.US))
            crit.addPropertyChangeListener(self)
            self.crit = crit
            self.add(crit)
            crit.setValue(0.99)

        run = JButton('Run!')
        run.addActionListener(manager)
        run.setActionCommand('RunFDist')
        self.run = run
        self.add(run)
コード例 #7
0
    def run( self ) :

        #---------------------------------------------------------------------------
        # Name: label()
        # Role: Instantiate a Right aligned label with the specified text
        #---------------------------------------------------------------------------
        def label( text ) :
            return JLabel(
                    text + ' ',
                    horizontalAlignment = SwingConstants.RIGHT
                )

        frame = JFrame(
            'PropertyListener',
            layout = BorderLayout(),
            locationRelativeTo = None,
            size = ( 400, 300 ),
            defaultCloseOperation = JFrame.EXIT_ON_CLOSE
        )

        pane = JPanel( layout = GridLayout( 0, 2 ) )

        pane.add( label( 'Number:' ) )
        pane.add(
            JFormattedTextField(
                NumberFormat.getNumberInstance(),
                value = 12345.67890,
                columns = 10,
                propertyChange = self.changed
            )
        )

        pane.add( label( 'Currency:' ) )
        pane.add(
            JFormattedTextField(
                NumberFormat.getCurrencyInstance(),
                value = 12345.67890,
                columns = 10,
                propertyChange = self.changed
            )
        )

        frame.add( 
            JSplitPane(
                JSplitPane.HORIZONTAL_SPLIT,
                pane,
                JButton(
                    'Clear',
                    actionPerformed = self.clear
                ),
            ),
            BorderLayout.NORTH
        )

        self.textArea = JTextArea(
            rows = 10,
            columns = 40,
            editable = 0,
            focusable = 0,
            font = Font( 'Courier' , Font.BOLD, 12 )
        ) 
        frame.add(
            JScrollPane( self.textArea ),
            BorderLayout.CENTER
        )

        frame.setVisible( 1 )