class editor(DefaultCellEditor):
#---------------------------------------------------------------------------
# Name: __init__()
# Role: Constructor - invoke the DefaultTableModel constructor
#---------------------------------------------------------------------------
def __init__(self):
DefaultCellEditor.__init__(self, JTextField())
self.spinner = JSpinner(SpinnerListModel(choices))
self.spinner.setEditor(JSpinner.ListEditor(self.spinner))
#---------------------------------------------------------------------------
# Name: getCellEditorValue()
# Role: Returns the current spinner selection
#---------------------------------------------------------------------------
def getCellEditorValue(self):
return self.spinner.getValue()
#---------------------------------------------------------------------------
# Name: getTableCellEditorComponent()
# Role: Returns the component to be used to edit the cell values
#---------------------------------------------------------------------------
def getTableCellEditorComponent(
self, # object reference
table, # JTable
value, # Object
isSelected, # boolean
row, # int
column # int
):
self.spinner.setValue(value)
return self.spinner
class StackOverlay:
def __init__(self):
self.frame = None
self.overlayColorPreviewLabel = None
self.showStackOverlayWindow()
self.overlayColor = None
def onQuit(self, e):
print "Exiting..."
self.frame.dispose()
def showColorChooser(self, e):
colorChooser = JColorChooser()
self.overlayColor = colorChooser.showDialog(self.frame, "Choose color", Color.red)
self.overlayColorPreviewLabel.setBackground(self.overlayColor)
def showStackOverlayWindow(self):
all = JPanel()
all.setLayout(MigLayout())
self.imageIDs = WindowManager.getIDList()
self.imageNames = []
if self.imageIDs is None:
IJ.error("No open images", "Stack Overlay requires at least one image to be already open.")
return
for i in self.imageIDs:
self.imageNames.append(WindowManager.getImage(i).getTitle())
self.baseImageBox = JComboBox(self.imageNames)
baseImageBoxLabel = JLabel("Base image")
self.baseImageBox.setSelectedIndex(0)
all.add(baseImageBoxLabel)
all.add(self.baseImageBox, "wrap")
self.overlayImageBox = JComboBox(self.imageNames)
overlayImageBoxLabel = JLabel("Overlay image")
if len(self.imageNames) > 1:
self.overlayImageBox.setSelectedIndex(1)
all.add(overlayImageBoxLabel)
all.add(self.overlayImageBox, "wrap")
all.add(JSeparator(SwingConstants.HORIZONTAL), "span, wrap")
overlayStyleFrame = JPanel()
overlayStyleFrame.setLayout(MigLayout())
overlayStyleFrame.setBorder(BorderFactory.createCompoundBorder(BorderFactory.createTitledBorder("Overlay Style"), BorderFactory.createEmptyBorder(5,5,5,5)))
colorLabel = JLabel("Overlay color")
self.overlayColorPreviewLabel = JLabel(" ")
self.overlayColorPreviewLabel.setBorder(BorderFactory.createEmptyBorder(0,0,1,0))
self.overlayColorPreviewLabel.setOpaque(True)
self.overlayColorPreviewLabel.setBackground(Color.red)
self.overlayColor = Color.red
colorPicker = JColorChooser()
colorPicker.setPreviewPanel(self.overlayColorPreviewLabel)
colorButton = JButton("Select color...", actionPerformed=self.showColorChooser)
opacityLabel = JLabel("Overlay opacity (%)")
opacitySpinnerModel = SpinnerNumberModel(100, 0, 100, 1)
self.opacitySpinner = JSpinner(opacitySpinnerModel)
overlayStyleFrame.add(colorLabel)
overlayStyleFrame.add(self.overlayColorPreviewLabel)
overlayStyleFrame.add(colorButton, "wrap")
overlayStyleFrame.add(opacityLabel)
overlayStyleFrame.add(self.opacitySpinner, "wrap")
all.add(overlayStyleFrame, "span, wrap")
self.virtualStackCheckbox = JCheckBox("Use Virtual Stack", True)
all.add(self.virtualStackCheckbox, "span, wrap")
# TODO: add non-thermonuclear cancel button functionality
overlayCancelButton = JButton("Cancel", actionPerformed=self.onQuit)
overlayStartButton = JButton("Overlay images", actionPerformed=self.overlayImages)
all.add(overlayCancelButton, "gapleft push")
all.add(overlayStartButton, "gapleft push")
self.frame = JFrame("Stack Overlay")
self.frame.getContentPane().add(JScrollPane(all))
self.frame.pack()
self.frame.setLocationRelativeTo(None)
self.frame.setVisible(True)
def overlayImages(self, e):
impBase = WindowManager.getImage(self.imageIDs[self.baseImageBox.getSelectedIndex()])
refBase = impBase.getStack().getProcessor(1)
impOverlay = WindowManager.getImage(self.imageIDs[self.overlayImageBox.getSelectedIndex()])
refOverlay = impOverlay.getStack().getProcessor(1)
print "Overlaying for stack sizes " + str(impBase.getStackSize()) + "/" + str(impOverlay.getStackSize()) + "..."
stack = None
if self.virtualStackCheckbox.isSelected():
stack = OverlayVirtualStack()
stack.overlayOpacity = float(self.opacitySpinner.getValue())/100.0
stack.overlayColor = AWTColorToArray(self.overlayColorPreviewLabel.getBackground())
stack.base = impBase
stack.overlay = impOverlay
ImagePlus("Stack Overlay from " + self.imageNames[self.baseImageBox.getSelectedIndex()] + " and " + self.imageNames[self.overlayImageBox.getSelectedIndex()], stack).show()
else:
IJ.error("Not implemented yet", "Using normal stacks is not implemented yet. Please use the Virtual Stack option.")
class StackOverlay:
def __init__(self):
self.frame = None
self.overlayColorPreviewLabel = None
self.showStackOverlayWindow()
self.overlayColor = None
def onQuit(self, e):
print "Exiting..."
self.frame.dispose()
def showColorChooser(self, e):
colorChooser = JColorChooser()
self.overlayColor = colorChooser.showDialog(self.frame, "Choose color",
Color.red)
self.overlayColorPreviewLabel.setBackground(self.overlayColor)
def showStackOverlayWindow(self):
all = JPanel()
all.setLayout(MigLayout())
self.imageIDs = WindowManager.getIDList()
self.imageNames = []
if self.imageIDs is None:
IJ.error(
"No open images",
"Stack Overlay requires at least one image to be already open."
)
return
for i in self.imageIDs:
self.imageNames.append(WindowManager.getImage(i).getTitle())
self.baseImageBox = JComboBox(self.imageNames)
baseImageBoxLabel = JLabel("Base image")
self.baseImageBox.setSelectedIndex(0)
all.add(baseImageBoxLabel)
all.add(self.baseImageBox, "wrap")
self.overlayImageBox = JComboBox(self.imageNames)
overlayImageBoxLabel = JLabel("Overlay image")
if len(self.imageNames) > 1:
self.overlayImageBox.setSelectedIndex(1)
all.add(overlayImageBoxLabel)
all.add(self.overlayImageBox, "wrap")
all.add(JSeparator(SwingConstants.HORIZONTAL), "span, wrap")
overlayStyleFrame = JPanel()
overlayStyleFrame.setLayout(MigLayout())
overlayStyleFrame.setBorder(
BorderFactory.createCompoundBorder(
BorderFactory.createTitledBorder("Overlay Style"),
BorderFactory.createEmptyBorder(5, 5, 5, 5)))
colorLabel = JLabel("Overlay color")
self.overlayColorPreviewLabel = JLabel(" ")
self.overlayColorPreviewLabel.setBorder(
BorderFactory.createEmptyBorder(0, 0, 1, 0))
self.overlayColorPreviewLabel.setOpaque(True)
self.overlayColorPreviewLabel.setBackground(Color.red)
self.overlayColor = Color.red
colorPicker = JColorChooser()
colorPicker.setPreviewPanel(self.overlayColorPreviewLabel)
colorButton = JButton("Select color...",
actionPerformed=self.showColorChooser)
opacityLabel = JLabel("Overlay opacity (%)")
opacitySpinnerModel = SpinnerNumberModel(100, 0, 100, 1)
self.opacitySpinner = JSpinner(opacitySpinnerModel)
overlayStyleFrame.add(colorLabel)
overlayStyleFrame.add(self.overlayColorPreviewLabel)
overlayStyleFrame.add(colorButton, "wrap")
overlayStyleFrame.add(opacityLabel)
overlayStyleFrame.add(self.opacitySpinner, "wrap")
all.add(overlayStyleFrame, "span, wrap")
self.virtualStackCheckbox = JCheckBox("Use Virtual Stack", True)
all.add(self.virtualStackCheckbox, "span, wrap")
# TODO: add non-thermonuclear cancel button functionality
overlayCancelButton = JButton("Cancel", actionPerformed=self.onQuit)
overlayStartButton = JButton("Overlay images",
actionPerformed=self.overlayImages)
all.add(overlayCancelButton, "gapleft push")
all.add(overlayStartButton, "gapleft push")
self.frame = JFrame("Stack Overlay")
self.frame.getContentPane().add(JScrollPane(all))
self.frame.pack()
self.frame.setLocationRelativeTo(None)
self.frame.setVisible(True)
def overlayImages(self, e):
impBase = WindowManager.getImage(
self.imageIDs[self.baseImageBox.getSelectedIndex()])
refBase = impBase.getStack().getProcessor(1)
impOverlay = WindowManager.getImage(
self.imageIDs[self.overlayImageBox.getSelectedIndex()])
refOverlay = impOverlay.getStack().getProcessor(1)
print "Overlaying for stack sizes " + str(
impBase.getStackSize()) + "/" + str(
impOverlay.getStackSize()) + "..."
stack = None
if self.virtualStackCheckbox.isSelected():
stack = OverlayVirtualStack()
stack.overlayOpacity = float(
self.opacitySpinner.getValue()) / 100.0
stack.overlayColor = AWTColorToArray(
self.overlayColorPreviewLabel.getBackground())
stack.base = impBase
stack.overlay = impOverlay
ImagePlus(
"Stack Overlay from " +
self.imageNames[self.baseImageBox.getSelectedIndex()] +
" and " +
self.imageNames[self.overlayImageBox.getSelectedIndex()],
stack).show()
else:
IJ.error(
"Not implemented yet",
"Using normal stacks is not implemented yet. Please use the Virtual Stack option."
)
