def get_cookies(cookies=PHYTOZOME_COOKIES):
from jcvi.utils.console import console
# Check if cookies is still good
if op.exists(cookies) and last_updated(cookies) < 3600:
return cookies
if console.is_terminal:
username = console.input("[bold green]Phytozome Login: "******"[bold green]Phytozome Password: "******"curl")
if curlcmd is None:
logging.error("curl command not installed. Aborting.")
return None
cmd = "{} https://signon.jgi.doe.gov/signon/create".format(curlcmd)
cmd += " --data-urlencode 'login={0}' --data-urlencode 'password={1}' -b {2} -c {2}".format(
username, pw, cookies
)
sh(cmd, outfile="/dev/null", errfile="/dev/null", log=False)
if not op.exists(cookies):
logging.error("Cookies file `{}` not created. Aborting.".format(cookies))
return None
return cookies
def get_cookies(cookies=".phytozome_cookies"):
from getpass import getpass
# Check if cookies is still good
if op.exists(cookies) and last_updated(cookies) < 3600:
return cookies
username = input("Phytozome Login: "******"Phytozome Password: "******"curl https://signon.jgi.doe.gov/signon/create --data-ascii"
cmd += " login={0}\&password={1} -b {2} -c {2}".format(
username, pw, cookies)
sh(cmd, outfile="/dev/null", errfile="/dev/null", log=False)
return cookies
def get_cookies(name="*****@*****.**", cookies="cookies"):
from getpass import getpass
# Check if cookies is still good
if op.exists(cookies) and last_updated(cookies) < 3600:
return cookies
username = raw_input("Phytozome Login [{0}]: ".format(name))
if username.strip() == '':
username = name
pw = getpass("Phytozome Password: "******"curl https://signon.jgi.doe.gov/signon/create --data-ascii"
cmd += " login={0}\&password={1} -b {2} -c {2}".format(username, pw, cookies)
sh(cmd, outfile="/dev/null", errfile="/dev/null", log=False)
return cookies
def get_cookies(name="*****@*****.**", cookies="cookies"):
from getpass import getpass
# Check if cookies is still good
if op.exists(cookies) and last_updated(cookies) < 3600:
return cookies
username = raw_input("Phytozome Login [{0}]: ".format(name))
if username.strip() == '':
username = name
pw = getpass("Phytozome Password: "******"curl https://signon.jgi.doe.gov/signon/create --data-ascii"
cmd += " login={0}\&password={1} -b {2} -c {2}".format(username, pw, cookies)
sh(cmd, outfile="/dev/null", errfile="/dev/null", log=False)
return cookies
def get_cookies(cookies=PHYTOZOME_COOKIES):
from getpass import getpass
# Check if cookies is still good
if op.exists(cookies) and last_updated(cookies) < 3600:
return cookies
username = input("Phytozome Login: "******"Phytozome Password: "******"curl")
if curlcmd is None:
print("curl command not installed. Aborting.", file=sys.stderr)
return None
cmd = "{} https://signon.jgi.doe.gov/signon/create".format(curlcmd)
cmd += " --data-urlencode 'login={0}' --data-urlencode 'password={1}' -b {2} -c {2}".format(
username, pw, cookies)
sh(cmd, outfile="/dev/null", errfile="/dev/null", log=False)
if not op.exists(cookies):
print("Cookies file `{}` not created. Aborting.".format(cookies),
file=sys.stderr)
return None
return cookies
