def plot_one_scaffold(scaffoldID,
ssizes,
sbed,
trios,
imagename,
iopts,
highlights=None):
ntrios = len(trios)
fig = plt.figure(1, (14, 8))
plt.cla()
plt.clf()
root = fig.add_axes([0, 0, 1, 1])
axes = [fig.add_subplot(1, ntrios, x) for x in range(1, ntrios + 1)]
scafsize = ssizes.get_size(scaffoldID)
for trio, ax in zip(trios, axes):
blastf, qsizes, qbed = trio
scaffolding(ax,
scaffoldID,
blastf,
qsizes,
ssizes,
qbed,
sbed,
highlights=highlights)
root.text(
0.5,
0.95,
"{0} (size={1})".format(scaffoldID, thousands(scafsize)),
size=18,
ha="center",
color="b",
)
root.set_xlim(0, 1)
root.set_ylim(0, 1)
root.set_axis_off()
savefig(imagename, dpi=iopts.dpi, iopts=iopts)
def plot_one_scaffold(scaffoldID, ssizes, sbed, trios, imagename, iopts,
highlights=None):
ntrios = len(trios)
fig = plt.figure(1, (14, 8))
plt.cla()
plt.clf()
root = fig.add_axes([0, 0, 1, 1])
axes = [fig.add_subplot(1, ntrios, x) for x in range(1, ntrios + 1)]
scafsize = ssizes.get_size(scaffoldID)
for trio, ax in zip(trios, axes):
blastf, qsizes, qbed = trio
scaffolding(ax, scaffoldID, blastf, qsizes, ssizes, qbed, sbed,
highlights=highlights)
root.text(.5, .95, "{0} (size={1})".format(scaffoldID, thousands(scafsize)),
size=18, ha="center", color='b')
root.set_xlim(0, 1)
root.set_ylim(0, 1)
root.set_axis_off()
savefig(imagename, dpi=iopts.dpi, iopts=iopts)