def get(self):
from kandu import patterns as p
self.engine.hierarchy = p.set_repository(
json.load(open(self.engine.jsonfile)), self.engine.repository)
html = self.get_preview_section()
h = self.hierarchy_to_html()
self.render("html/index.html", repository=html, hierarchy=h)
def post(self):
from kandu import patterns as p
preset = self.get_argument('p')
if preset == 'loadopenfmri':
self.engine.hierarchy.update(
p.set_repository(p.openfmri, self.engine.repository))
elif preset == 'loadjson':
print self.engine.jsonfile
self.engine.hierarchy.update(
p.set_repository(json.load(open(self.engine.jsonfile)),
self.engine.repository))
elif preset == 'loadfreesurfer':
self.engine.hierarchy.update(
p.set_repository(p.freesurfer, self.engine.repository))
elif preset == 'loadmorpho':
self.engine.hierarchy.update(
p.set_repository(p.morphologist, self.engine.repository))
elif preset == 'reset':
self.engine.hierarchy = {}
html = self.hierarchy_to_html()
self.write(html)
def get(self):
from kandu import patterns as p
self.engine.hierarchy = p.set_repository(
json.load(open(self.engine.jsonfile)), self.engine.repository)
html = self.get_preview_section()
h = self.hierarchy_to_html()
html = self.render_string("html/index.html",
repository=html,
hierarchy=h)
html = html.replace(
'<script id="tests"></script>',
'<script>%s</script>' % self.render_string('js/tests.js'))
self.write(html)
def __init__(self, repository, jsonfile, ignorelist=[], maxitems = 500, unknown_only=False, separators='_'):
self.repository = osp.abspath(repository)
self.jsonfile = osp.abspath(jsonfile)
if osp.isfile(self.jsonfile):
j = p.set_repository(json.load(open(self.jsonfile)), self.repository)
else:
j = {}
print 'Creating %s'%self.jsonfile
json.dump(p.strip_repository(j, self.repository), open(self.jsonfile, 'w'))
self.hierarchy = j
self.maxitems = maxitems
self.ignorelist = ignorelist
self.unknown_only = unknown_only
allowed_sep = set('_.-')
removed_sep = list(set(separators).difference(allowed_sep))
if len(removed_sep) != 0:
print 'The following separators have been ignored : %s'%', '.join(removed_sep)
kept_sep = list(set(separators).intersection(allowed_sep))
if len(kept_sep) == 0:
raise Exception('no valid separators given in %s (allowed : %s)'%(separators, ' '.join(allowed_sep)))
self.separators = kept_sep
self.separators.append('/')
def __init__(self, repository, rules):
self.repository = repository.rstrip('/')
self.rules = p.set_repository(rules, repository)