def test_orm_testobj():
import kimobjects
test = kimobjects.Test(
"LatticeConstantCubicEnergy_Al_fcc__TE_000000000000_000")
assert len(list(test.models)) == 1
assert test.kim_code == "LatticeConstantCubicEnergy_Al_fcc__TE_000000000000_000"
assert test.kim_code_name == "LatticeConstantCubicEnergy_Al_fcc"
assert test.kim_code_leader == "TE"
assert test.kim_code_version == "000"
def run_job(self):
""" Endless loop that awaits jobs to run """
while True:
with loglock:
self.logger.info("Waiting for jobs...")
job = self.bean.reserve()
self.job = job
# if appears that there is a 120sec re-birth of jobs that have been reserved
# and I do not want to put an artificial time limit, so let's bury jobs
# when we get them
job.bury()
self.comm.send_msg("running", job.body)
# update the repository, attempt to run the job and return the results to the director
try:
jobmsg = Message(string=job.body)
except simplejson.JSONDecodeError:
# message is not JSON decodeable
with loglock:
self.logger.error("Did not recieve valid JSON, {}".format(job.body))
job.delete()
continue
except KeyError:
# message does not have the right keys
with loglock:
self.logger.error("Did not recieve a valid message, missing key: {}".format(job.body))
job.delete()
continue
self.jobmsg = jobmsg
# check to see if this is a verifier or an actual test
try:
name,leader,num,version = database.parse_kim_code(jobmsg.job[0])
except InvalidKIMID as e:
# we were not given a valid kimid
with loglock:
self.logger.error("Could not parse {} as a valid KIMID".format(jobmsg.job[0]))
self.job_message(jobmsg, errors=e, tube=TUBE_ERRORS)
job.delete()
continue
if leader == "VT" or leader == "VM":
try:
with buildlock:
with loglock:
self.logger.info("rsyncing to repo %r", jobmsg.job+jobmsg.depends)
rsync_tools.worker_verification_read(*jobmsg.job, depends=jobmsg.depends)
self.make_all()
verifier_kcode, subject_kcode = jobmsg.job
verifier = kimobjects.Verifier(verifier_kcode)
subject = kimobjects.Subject(subject_kcode)
with loglock:
self.logger.info("Running (%r,%r)",verifier,subject)
comp = compute.Computation(verifier, subject)
comp.run(jobmsg.jobid)
result = kimobjects.Result(jobmsg.jobid).results
with loglock:
self.logger.info("rsyncing results %r", jobmsg.jobid)
rsync_tools.worker_verification_write(jobmsg.jobid)
with loglock:
self.logger.info("sending result message back")
self.job_message(jobmsg, results=result, tube=TUBE_RESULTS)
job.delete()
# could be that a dependency has not been met.
# put it back on the queue to wait
except PipelineDataMissing as e:
if job.stats()['age'] < 5*PIPELINE_JOB_TIMEOUT:
with loglock:
self.logger.error("Run failed, missing data. Returning to queue... (%r)" % e)
job.release(delay=PIPELINE_JOB_TIMEOUT)
else:
with loglock:
self.logger.error("Run failed, missing data. Lifetime has expired, deleting (%r)" % e)
job.delete()
# another problem has occurred. just remove the job
# and send the error back along the error queue
except Exception as e:
with loglock:
self.logger.error("Run failed, deleting... %r" % e)
self.job_message(jobmsg, errors=e, tube=TUBE_ERRORS)
job.delete()
else:
try:
with buildlock:
with loglock:
self.logger.info("rsyncing to repo %r %r", jobmsg.job,jobmsg.depends)
rsync_tools.worker_test_result_read(*jobmsg.job, depends=jobmsg.depends)
self.make_all()
test_kcode, model_kcode = jobmsg.job
test = kimobjects.Test(test_kcode)
model = kimobjects.Model(model_kcode)
with loglock:
self.logger.info("Running (%r,%r)",test,model)
comp = compute.Computation(test, model)
comp.run(jobmsg.jobid)
result = kimobjects.Result(jobmsg.jobid).results
with loglock:
self.logger.info("rsyncing results %r", jobmsg.jobid)
rsync_tools.worker_test_result_write(jobmsg.jobid)
with loglock:
self.logger.info("sending result message back")
self.job_message(jobmsg, results=result, tube=TUBE_RESULTS)
job.delete()
# could be that a dependency has not been met.
# put it back on the queue to wait
except PipelineDataMissing as e:
if job.stats()['age'] < 5*PIPELINE_JOB_TIMEOUT:
with loglock:
self.logger.error("Run failed, missing data. Returning to queue... (%r)" % e)
job.release(delay=PIPELINE_JOB_TIMEOUT)
else:
with loglock:
self.logger.error("Run failed, missing data. Lifetime has expired, deleting (%r)" % e)
job.delete()
# another problem has occurred. just remove the job
# and send the error back along the error queue
except Exception as e:
with loglock:
self.logger.error("Run failed, deleting... %r" % e)
self.job_message(jobmsg, errors="%r"%e, tube=TUBE_ERRORS)
job.delete()
self.job = None
self.jobsmsg = None
def push_jobs(self, update):
""" Push all of the jobs that need to be done given an update """
kimid = update['kimid']
status = update['status']
priority_factor = self.priority_to_number(update['priority'])
name,leader,num,version = database.parse_kim_code(kimid)
# try to build the kimid before sending jobs
# if self.make_object(kimid) == 0:
# rsync_tools.director_build_write(kimid)
# else:
# self.logger.error("Could not build %r", kimid)
# self.bsd.use(TUBE_ERRORS)
# self.bsd.put(simplejson.dumps({"error": "Could not build %r" % kimid}))
# return
self.make_all()
if leader=="VT":
# for every test launch
test = kimobjects.VerificationTest(kimid)
models = kimobjects.Test.all()
tests = [test]*ll(models)
elif leader=="VM":
#for all of the models, run a job
test = kimobjects.VerificationModel(kimid)
models = kimobjects.Model.all()
tests = [test]*ll(models)
else:
if status == "approved":
if leader=="TE":
# for all of the models, add a job
test = kimobjects.Test(kimid)
models = list(test.models)
tests = [test]*ll(models)
elif leader=="MO":
# for all of the tests, add a job
model = kimobjects.Model(kimid)
tests = list(model.tests)
models = [model]*ll(tests)
elif leader=="TD":
# if it is a new version of an existing test driver, hunt
# down all of the tests that use it and launch their
# corresponding jobs
driver = kimobjects.TestDriver(kimid)
temp_tests = list(driver.tests)
models = []
tests = []
for t in temp_tests:
tmodels = list(t.models)
if len(tmodels) > 0:
models.extend(tmodels)
tests.extend([t]*ll(tmodels))
elif leader=="MD":
# if this is a new version, hunt down all of the models
# that rely on it and recompute their results
driver = kimobjects.ModelDriver(kimid)
temp_models = list(driver.models)
tests = []
models = []
for m in temp_models:
mtests = list(m.tests)
if len(mtests) > 0:
tests.extend(mtests)
models.extend([m]*ll(mtests))
else:
self.logger.error("Tried to update an invalid KIM ID!: %r",kimid)
checkmatch = True
if status == "pending":
if leader=="TE":
# a pending test
rsync_tools.director_test_verification_read(kimid)
self.make_all()
# run against all test verifications
tests = list(kimobjects.VertificationTest.all())
models = [kimobjects.Test(kimid, search=False)]*ll(tests)
elif leader=="MO":
# a pending model
rsync_tools.director_model_verification_read(kimid)
self.make_all()
# run against all model verifications
tests = list(kimobjects.VertificationModel.all())
models = [kimobjects.Model(kimid, search=False)]*ll(tests)
elif leader=="TD":
# a pending test driver
pass
elif leader=="MD":
# a pending model driver
pass
else:
self.logger.error("Tried to update an invalid KIM ID!: %r",kimid)
checkmatch = False
if checkmatch:
for test, model in zip(tests,models):
if kimapi.valid_match(test,model):
priority = int(priority_factor*database.test_model_to_priority(test,model) * 1000000)
self.check_dependencies_and_push(test,model,priority,status)
else:
for test, model in zip(tests,models):
priority = int(priority_factor*database.test_model_to_priority(test,model) * 1000000)
self.check_dependencies_and_push(test,model,priority,status)
def test_orm_testobj_driver():
import kimobjects
test = kimobjects.Test(
"LatticeConstantCubicEnergy_Ar_fcc__TE_000000000001_000")
assert "LatticeConstantCubicEnergy__TD_000000000000_000" == next(
test.test_drivers).kim_code
def test_testobj2():
import kimobjects
test = kimobjects.Test(
"LatticeConstantCubicEnergy_Al_fcc__TE_000000000000_000")
test.infile.readlines()
def push_jobs(self, update):
""" Push all of the jobs that need to be done given an update """
self.make_all()
kimid = update['kimid']
status = update['status']
priority_factor = self.priority_to_number(update['priority'])
if database.isuuid(kimid):
priority = int(priority_factor * 1000000)
self.check_dependencies_and_push(kimid, priority, status)
return
name, leader, num, version = database.parse_kim_code(kimid)
checkmatch = False
if leader == "VT":
# for every test launch
test = kimobjects.TestVerification(kimid)
models = list(kimobjects.Test.all())
tests = [test] * ll(models)
elif leader == "VM":
#for all of the models, run a job
test = kimobjects.ModelVerification(kimid)
models = list(kimobjects.Model.all())
tests = [test] * ll(models)
else:
if status == "approved":
if leader == "TE":
# for all of the models, add a job
test = kimobjects.Test(kimid)
models = list(test.models)
tests = [test] * ll(models)
elif leader == "MO":
# for all of the tests, add a job
model = kimobjects.Model(kimid)
tests = list(model.tests)
models = [model] * ll(tests)
elif leader == "TD":
# if it is a new version of an existing test driver, hunt
# down all of the tests that use it and launch their
# corresponding jobs
driver = kimobjects.TestDriver(kimid)
temp_tests = list(driver.tests)
models = []
tests = []
for t in temp_tests:
tmodels = list(t.models)
if len(tmodels) > 0:
models.extend(tmodels)
tests.extend([t] * ll(tmodels))
elif leader == "MD":
# if this is a new version, hunt down all of the models
# that rely on it and recompute their results
driver = kimobjects.ModelDriver(kimid)
temp_models = list(driver.models)
tests = []
models = []
for m in temp_models:
mtests = list(m.tests)
if len(mtests) > 0:
tests.extend(mtests)
models.extend([m] * ll(mtests))
else:
self.logger.error("Tried to update an invalid KIM ID!: %r",
kimid)
checkmatch = True
if status == "pending":
rsync_tools.director_pending_read(kimid)
self.make_all()
if leader == "TE":
# run against all test verifications
tests = list(kimobjects.VertificationTest.all())
models = [kimobjects.Test(kimid, search=False)] * ll(tests)
elif leader == "MO":
# run against all model verifications
tests = list(kimobjects.VertificationModel.all())
models = [kimobjects.Model(kimid, search=False)
] * ll(tests)
elif leader == "TD":
# a pending test driver
pass
elif leader == "MD":
# a pending model driver
pass
else:
self.logger.error("Tried to update an invalid KIM ID!: %r",
kimid)
checkmatch = False
for test, model in zip(tests, models):
if not checkmatch or (checkmatch
and kimapi.valid_match(test, model)):
priority = int(priority_factor *
database.test_model_to_priority(test, model) *
1000000)
self.check_dependencies_and_push((test, model), priority,
status)