def test_klebsiella_spallanzanii(self):
species, _ = get_klebsiella_species(
'test/sequences/GCA_901563875.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella spallanzanii')
def test_klebsiella_quasipneumoniae_subsp_similipneumoniae(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000492795.1.fna.gz', self.data_dir)
self.assertEqual(species,
'Klebsiella quasipneumoniae subsp. similipneumoniae')
def test_klebsiella_quasivariicola(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000523395.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella quasivariicola')
def test_klebsiella_pasteurii(self):
species, _ = get_klebsiella_species(
'test/sequences/GCA_902158585.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella pasteurii')
def test_klebsiella_pneumoniae(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000016305.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella pneumoniae')
def test_klebsiella_africanensis(self):
species, _ = get_klebsiella_species('test/sequences/ERR2835900.fna.gz',
self.data_dir)
self.assertEqual(species, 'Klebsiella africana')
def test_klebsiella_africana(self):
species, _ = get_klebsiella_species(
'test/test_genomes/ERR2835900.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella africana')
def test_klebsiella_grimontii(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000733495.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella grimontii')
def test_klebsiella_indica(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_005860775.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella indica')
def test_citrobacter(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_003937345.1.fna.gz', self.data_dir)
self.assertTrue('Citrobacter' in species)
def test_klebsiella_aerogenes(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000215745.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella aerogenes')
def test_salmonella(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_004010735.1.fna.gz', self.data_dir)
self.assertTrue('Salmonella' in species)
def test_raoultella_terrigena(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000829965.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella (Raoultella) terrigena')
def test_raoultella_ornithinolytica(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000247895.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella (Raoultella) ornithinolytica')
def test_klebsiella_variicola_subsp_variicola(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000019565.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella variicola subsp. variicola')
def test_klebsiella_michiganensis(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000240325.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella michiganensis')
def test_klebsiella_variicola_subsp_tropicalensis(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_002806645.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella variicola subsp. tropica')
def test_klebsiella_oxytoca(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000247855.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella oxytoca')
def test_raoultella_planticola(self):
species, _ = get_klebsiella_species(
'test/sequences/GCF_000648315.1.fna.gz', self.data_dir)
self.assertEqual(species, 'Klebsiella (Raoultella) planticola')
def test_klebsiella_quasipneumoniae_subsp_quasipneumoniae(self):
species, _ = get_klebsiella_species(
'test/test_genomes/GCF_000492415.1.fna.gz', self.data_dir)
self.assertEqual(species,
'Klebsiella quasipneumoniae subsp. quasipneumoniae')
