def test_write_empty_task_fails(self):
task = KromatographyTask()
with self.assertRaises(IOError):
# Fail if writing in current dir:
assert_file_roundtrip_identical(task)
# But not when providing a regular folder as target:
assert_file_roundtrip_identical(task, target_dir=HERE)
def test_modified_simple_datasource_via_list(self):
# FIXME: adding to the datasource currently means adding to the
# object_catalog, to the data catalog and the corresponding list
new_comp = Component(name="New Component",
charge=UnitScalar(0.0, units='1'),
pKa=UnitScalar(0.0, units='1'))
self.ds.set_object_of_type("components", new_comp)
self.ds.make_clean()
assert_file_roundtrip_identical(self.ds)
def test_write_empty_task(self):
task = KromatographyTask()
assert_file_roundtrip_identical(task)
def test_default_simple_datasource(self):
assert_file_roundtrip_identical(self.ds)
def test_write_complete_study(self):
# Ignore dirty flag on study datasource since currently not in use
# Also ignore the datasource since it isn;t stored when storing a study
assert_file_roundtrip_identical(self.study,
ignore=['datasource', 'dirty'])
def test_write_non_empty_task(self):
project = KromatographyProject(study=self.study)
obj = KromatographyTask(project=project)
# Ignore dirty flag on study datasource since currently not in use
# Also ignore the datasource since it isn;t stored when storing a task
assert_file_roundtrip_identical(obj, ignore=['datasource', 'dirty'])