def test_primer_set_list(self):
obs = PrimerSet.list_primer_sets()
exp = [{'primer_set_id': 1, 'external_id': 'EMP 16S V4 primer set',
'target_name': 'Amplicon'},
{'primer_set_id': 2, 'external_id': 'iTru shotgun primer set',
'target_name': 'Shotgun'}]
self.assertEqual(obs, exp)
def test_primer_set_attributes(self):
obs = PrimerSet(1)
self.assertEqual(obs.external_id, 'EMP 16S V4 primer set')
self.assertEqual(obs.target_name, 'Amplicon')
self.assertIsNone(obs.notes)
self.assertEqual(obs.plates, [Plate(1), Plate(2), Plate(3), Plate(4),
Plate(5), Plate(6), Plate(7), Plate(8)])
def post(self):
primer_set = self.get_argument('primer_set')
master_set_order = self.get_argument('master_set_order')
creation_date = self.get_argument('creation_date')
month, day, year = map(int, creation_date.split('/'))
creation_date = date(year, month, day)
process = PrimerWorkingPlateCreationProcess.create(
self.current_user, PrimerSet(primer_set), master_set_order,
creation_date)
self.write({'process': process.id})
def get(self):
primer_sets = PrimerSet.list_primer_sets()
self.render('primer_plates.html', primer_sets=primer_sets)
def test_primer_set_attributes(self):
obs = PrimerSet(1)
self.assertEqual(obs.external_id, 'EMP primer set')
self.assertEqual(obs.target_name, '16S V4')
self.assertIsNone(obs.notes)