def test_via_OpExportSlot(self):
data = 255 * numpy.random.random((64, 128, 128, 1))
data = data.astype(numpy.uint8)
data = vigra.taggedView(data, vigra.defaultAxistags("zyxc"))
graph = Graph()
opPiper = OpArrayPiper(graph=graph)
opPiper.Input.setValue(data)
opExport = OpExportSlot(graph=graph)
opExport.Input.connect(opPiper.Output)
opExport.OutputFormat.setValue("dvid")
url = "http://{hostname}/api/node/{data_uuid}/{data_name}".format(
**self.__dict__)
opExport.OutputFilenameFormat.setValue(url)
assert opExport.ExportPath.ready()
assert opExport.ExportPath.value == url
opExport.run_export()
opRead = OpInputDataReader(graph=graph)
try:
opRead.FilePath.setValue(opExport.ExportPath.value)
expected_data = data.view(numpy.ndarray)
read_data = opRead.Output(*roiFromShape(data.shape)).wait()
assert (read_data == expected_data
).all(), "Read data didn't match exported data!"
finally:
opRead.cleanUp()
def testBasic_Dvid(self):
if _skip_dvid:
raise nose.SkipTest
# Spin up a mock dvid server to test with.
dvid_dataset, data_uuid, data_name = "datasetA", "abcde", "indices_data"
mockserver_data_file = self._tmpdir + '/mockserver_data.h5'
with H5MockServerDataFile(mockserver_data_file) as test_h5file:
test_h5file.add_node(dvid_dataset, data_uuid)
server_proc, shutdown_event = H5MockServer.create_and_start(
mockserver_data_file,
"localhost",
8000,
same_process=False,
disable_server_logging=True)
try:
data = 255 * numpy.random.random((100, 100, 4))
data = data.astype(numpy.uint8)
data = vigra.taggedView(data, vigra.defaultAxistags('xyc'))
graph = Graph()
opPiper = OpArrayPiper(graph=graph)
opPiper.Input.setValue(data)
opExport = OpExportSlot(graph=graph)
opExport.Input.connect(opPiper.Output)
opExport.OutputFormat.setValue('dvid')
url = 'http://localhost:8000/api/node/{data_uuid}/{data_name}'.format(
**locals())
opExport.OutputFilenameFormat.setValue(url)
assert opExport.ExportPath.ready()
assert opExport.ExportPath.value == url
opExport.run_export()
try:
opRead = OpInputDataReader(graph=graph)
opRead.FilePath.setValue(opExport.ExportPath.value)
expected_data = data.view(numpy.ndarray)
read_data = opRead.Output(*roiFromShape(data.shape)).wait()
assert (read_data == expected_data
).all(), "Read data didn't match exported data!"
finally:
opRead.cleanUp()
finally:
shutdown_event.set()
server_proc.join()