def createAdjustMethodSelector(self, start_position):
# define widget
regtypes = self.node.getAdjustMethods()
self.widgets['adjust method'] = Choice(self, -1, choices=regtypes)
# make sizer
sz = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Adjust exposure dose by changing')
sz.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['adjust method'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
# add to main
total_length = (1, 1)
self.szsettings.Add(sz, start_position, total_length, wx.ALIGN_CENTER)
return start_position[0] + total_length[0], start_position[
1] + total_length[1]
def createTemplateCorrelationChoice(self, sz, start_position):
# define widget
self.widgets['template type'] = Choice(self,
-1,
choices=self.node.cortypes)
# make sizer
szcor = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Use')
szcor.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcor.Add(self.widgets['template type'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'correlation')
szcor.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
# add to main
total_length = (1, 2)
return self.addToSizer(sz, szcor, start_position, total_length)
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Low Pass Filter (Phase Correlation)')
sbszlpf = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['template lpf'] = {}
self.widgets['template lpf']['sigma'] = FloatEntry(self, -1,
min=0.0, chars=4)
szlpf = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Sigma:')
szlpf.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlpf.Add(self.widgets['template lpf']['sigma'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT)
szlpf.AddGrowableCol(1)
sbszlpf.Add(szlpf, 1, wx.EXPAND|wx.ALL, 5)
sb = wx.StaticBox(self, -1, 'Template Correlation')
sbsztemplate = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['template rings'] = leginon.gui.wx.Rings.Panel(self)
self.widgets['template type'] = Choice(self, -1, choices=self.node.cortypes)
szcor = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Use')
szcor.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcor.Add(self.widgets['template type'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'correlation')
szcor.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sztemplate = wx.GridBagSizer(5, 5)
sztemplate.Add(szcor, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sztemplate.Add(self.widgets['template rings'], (1, 0), (1, 1),
wx.ALIGN_CENTER|wx.FIXED_MINSIZE)
sbsztemplate.Add(sztemplate, 1, wx.EXPAND|wx.ALL, 5)
self.btest = wx.Button(self, -1, 'Test')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.btest, (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szbutton.AddGrowableCol(0)
self.Bind(wx.EVT_BUTTON, self.onTestButton, self.btest)
return [sbsztemplate, sbszlpf, szbutton]
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
szcor = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Use')
szcor.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.widgets['correlation type'] = Choice(self,
-1,
choices=self.node.cortypes)
szcor.Add(self.widgets['correlation type'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'correlation')
szcor.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Correlation Low Pass')
self.widgets['correlation lpf'] = FloatEntry(self,
-1,
min=0.0,
chars=4)
szcor.Add(label, (1, 0), (1, 1))
szcor.Add(self.widgets['correlation lpf'], (1, 1), (1, 1))
self.widgets['rotate'] = wx.CheckBox(self, -1, 'Rotate')
szcor.Add(self.widgets['rotate'], (2, 0), (1, 1))
label = wx.StaticText(self, -1, 'Angle Increment')
self.widgets['angle increment'] = FloatEntry(self,
-1,
min=0.0,
chars=4)
szcor.Add(label, (3, 0), (1, 1))
szcor.Add(self.widgets['angle increment'], (3, 1), (1, 1))
label = wx.StaticText(self, -1, 'SNR Threshold')
self.widgets['snr threshold'] = FloatEntry(self, -1, min=0.0, chars=4)
szcor.Add(label, (4, 0), (1, 1))
szcor.Add(self.widgets['snr threshold'], (4, 1), (1, 1))
self.bcor = wx.Button(self, -1, 'Correlate')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.bcor, (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_LEFT)
self.Bind(wx.EVT_BUTTON, self.onCorrelate, self.bcor)
return [szcor, szbutton]
def addBasicGonModelerSettings(self):
sb = wx.StaticBox(self, -1, 'Measurement')
sbszmeasure = wx.StaticBoxSizer(sb, wx.VERTICAL)
sb = wx.StaticBox(self, -1, 'Modeling')
sbszmodel = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['measure axis'] = Choice(self, -1, choices=self.node.axes)
self.widgets['measure points'] = IntEntry(self, -1, min=2, chars=5)
self.widgets['measure interval'] = FloatEntry(self, -1, chars=9)
self.widgets['model mag only'] = wx.CheckBox(
self, -1, 'Scale and Rotation Adjustment Only')
self.widgets['model terms'] = IntEntry(self, -1, chars=2)
szmeasure = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Axis:')
szmeasure.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmeasure.Add(self.widgets['measure axis'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Points:')
szmeasure.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmeasure.Add(
self.widgets['measure points'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Interval')
szmeasure.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmeasure.Add(
self.widgets['measure interval'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT | wx.FIXED_MINSIZE)
sbszmeasure.Add(szmeasure, 1, wx.EXPAND | wx.ALL, 5)
szmodel = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Terms:')
szmodel.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmodel.Add(
self.widgets['model terms'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT | wx.FIXED_MINSIZE)
szmodel.Add(self.widgets['model mag only'], (1, 0), (1, 2),
wx.ALIGN_CENTER)
szmodel.AddGrowableCol(1)
sbszmodel.Add(szmodel, 1, wx.EXPAND | wx.ALL, 5)
return [sbszmeasure, sbszmodel]
def addSettings(self):
self.widgets['correlation type'] = Choice(self,
-1,
choices=self.node.cortypes)
self.widgets['override preset'] = wx.CheckBox(self, -1,
'Override Preset')
self.widgets['instruments'] = leginon.gui.wx.Instrument.SelectionPanel(
self)
self.panel.setInstrumentSelection(self.widgets['instruments'])
self.widgets['camera settings'] = leginon.gui.wx.Camera.CameraPanel(
self)
self.widgets['camera settings'].setGeometryLimits({
'size':
self.node.instrument.camerasize,
'binnings':
self.node.instrument.camerabinnings,
'binmethod':
self.node.instrument.camerabinmethod
})
szcor = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Use')
szcor.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcor.Add(self.widgets['correlation type'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'correlation')
szcor.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz = wx.GridBagSizer(5, 5)
sz.Add(szcor, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['override preset'], (1, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['instruments'], (2, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['camera settings'], (0, 1), (3, 1),
wx.ALIGN_CENTER | wx.EXPAND)
sz.AddGrowableRow(2)
sz.AddGrowableCol(0)
sz.AddGrowableCol(1)
return sz
def onNodeInitialized(self):
leginon.gui.wx.Instrument.SelectionMixin.onNodeInitialized(self)
self.locationsdialog = StageLocationsDialog(self, self.node)
movetypes = self.node.calclients.keys()
self.cmovetype = Choice(self.toolbar, -1, choices=movetypes)
self.cmovetype.SetStringSelection(self.node.settings['move type'])
## make sure node setting is a value that is in the choice list
self.node.settings['move type'] = self.cmovetype.GetStringSelection()
self.cmovetype.SetToolTip(wx.ToolTip('Navigion Parameter'))
self.toolbar.InsertControl(2, self.cmovetype)
self.toolbar.Bind(wx.EVT_TOOL,
self.onSettingsTool,
id=leginon.gui.wx.ToolBar.ID_SETTINGS)
self.toolbar.Bind(wx.EVT_TOOL,
self.onAcquireTool,
id=leginon.gui.wx.ToolBar.ID_ACQUIRE)
self.toolbar.Bind(wx.EVT_TOOL,
self.onStageLocationsTool,
id=leginon.gui.wx.ToolBar.ID_STAGE_LOCATIONS)
self.toolbar.Bind(wx.EVT_TOOL,
self.onReproTest,
id=leginon.gui.wx.ToolBar.ID_MEASURE)
self.toolbar.Bind(wx.EVT_TOOL,
self.onResetXY,
id=leginon.gui.wx.ToolBar.ID_RESET_XY)
self.toolbar.Bind(wx.EVT_TOOL,
self.onResetZ,
id=leginon.gui.wx.ToolBar.ID_RESET_Z)
self.toolbar.Bind(wx.EVT_TOOL,
self.onResetAlpha,
id=leginon.gui.wx.ToolBar.ID_RESET_ALPHA)
self.cmovetype.Bind(wx.EVT_CHOICE, self.onMoveTypeChoice)
self.Bind(leginon.gui.wx.ImagePanelTools.EVT_IMAGE_CLICKED,
self.onImageClicked, self.imagepanel)
self.test_dialog = ReproTestDialog(self)
self.Bind(EVT_TEST, self.onReproTest, self)
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Image Correction')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
#sb = wx.StaticBox(self, -1, 'Clipping')
#sbszclip = wx.StaticBoxSizer(sb, wx.VERTICAL)
sb = wx.StaticBox(self, -1, 'Reference Creation')
sbszref = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['instruments'] = leginon.gui.wx.Instrument.SelectionPanel(
self)
self.panel.setInstrumentSelection(self.widgets['instruments'])
self.widgets['n average'] = IntEntry(self, -1, min=1, max=99, chars=2)
self.widgets['combine'] = Choice(self,
-1,
choices=['median', 'average'])
self.widgets['store series'] = wx.CheckBox(self, -1, 'Save all images')
self.widgets['camera settings'] = leginon.gui.wx.Camera.CameraPanel(
self)
self.widgets['camera settings'].setGeometryLimits({
'size':
self.node.instrument.camerasize,
'binnings':
self.node.instrument.camerabinnings,
'binmethod':
self.node.instrument.camerabinmethod
})
#self.widgets['clip min'] = FloatEntry(self, -1, chars=6)
#self.widgets['clip max'] = FloatEntry(self, -1, chars=6)
'''
szclip = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Clip min:')
szclip.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szclip.Add(self.widgets['clip min'], (0, 1), (1, 1), wx.ALIGN_RIGHT|wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Clip max:')
szclip.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szclip.Add(self.widgets['clip max'], (1, 1), (1, 1), wx.ALIGN_RIGHT|wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
szclip.AddGrowableCol(1)
sbszclip.Add(szclip, 1, wx.ALIGN_CENTER|wx.EXPAND|wx.ALL, 3)
'''
szref = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Images to combine:')
szref.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szref.Add(self.widgets['n average'], (0, 1), (1, 1),
wx.ALIGN_RIGHT | wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Combine method:')
szref.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szref.Add(self.widgets['combine'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
szref.Add(self.widgets['store series'], (2, 0), (1, 2))
sbszref.Add(szref, 1, wx.ALIGN_CENTER | wx.EXPAND | wx.ALL, 3)
sz = wx.GridBagSizer(5, 10)
sz.Add(self.widgets['instruments'], (0, 0), (1, 1), wx.ALIGN_CENTER)
sz.Add(self.widgets['camera settings'], (1, 0), (2, 1),
wx.ALIGN_CENTER | wx.EXPAND)
sz.Add(sbszref, (0, 1), (1, 1), wx.EXPAND)
#sz.Add(sbszclip, (1, 1), (1, 1), wx.EXPAND)
sbsz.Add(sz, 0, wx.ALIGN_CENTER | wx.ALL, 5)
return [sbsz]
def addSettings(self):
presets = self.node.presetsclient.getPresetNames()
self.widgets['preset'] = PresetChoice(self, -1)
self.widgets['preset'].setChoices(presets)
self.widgets['label'] = Entry(self, -1, allowspaces=False)
self.widgets['radius'] = FloatEntry(self, -1, min=0.0, chars=6)
self.widgets['max size'] = IntEntry(self, -1, chars=6)
self.widgets['max targets'] = IntEntry(self, -1, chars=6)
self.widgets['overlap'] = FloatEntry(self, -1, max=100.0, chars=6)
self.widgets['mosaic center'] = Choice(
self, -1, choices=['stage center', 'current position'])
self.widgets['ignore request'] = wx.CheckBox(
self, -1, 'Ignore Request to Make Targets from Others')
#szradius = wx.GridBagSizer(5, 5)
#szradius.Add(self.widgets['radius'], (0, 0), (1, 1),
# wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
#label = wx.StaticText(self, -1, 'meters')
#szradius.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz = wx.GridBagSizer(5, 10)
label = wx.StaticText(self, -1, 'Preset:')
sz.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['preset'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
label = wx.StaticText(self, -1, 'Label:')
sz.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['label'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
label = wx.StaticText(self, -1, 'Radius:')
sz.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
#sz.Add(szradius, (2, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
sz.Add(self.widgets['radius'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'm')
sz.Add(label, (2, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Max size:')
sz.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['max size'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
label = wx.StaticText(self, -1, 'Max targets:')
sz.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['max targets'], (4, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
label = wx.StaticText(self, -1, 'Overlap:')
sz.Add(label, (5, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['overlap'], (5, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, '%')
sz.Add(label, (5, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Mosaic Center:')
sz.Add(label, (6, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['mosaic center'], (6, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
sz.Add(self.widgets['ignore request'], (7, 0), (1, 3),
wx.ALIGN_CENTER_VERTICAL)
sz.AddGrowableCol(1)
return sz
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Raster')
sbszraster = wx.StaticBoxSizer(sb, wx.VERTICAL)
sb = wx.StaticBox(self, -1, 'Spacing/Angle Calculator')
sbszauto = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['raster spacing'] = IntEntry(self, -1, chars=4, min=1)
self.widgets['raster spacing asymm'] = IntEntry(self, -1, chars=4)
self.widgets['raster limit'] = IntEntry(self, -1, chars=4, min=1)
self.widgets['raster limit asymm'] = IntEntry(self, -1, chars=4)
self.widgets['raster angle'] = FloatEntry(self, -1, chars=4)
self.widgets['raster center on image'] = wx.CheckBox(self, -1, 'Center on image')
self.widgets['raster center x'] = IntEntry(self, -1, chars=4)
self.widgets['raster center y'] = IntEntry(self, -1, chars=4)
self.widgets['raster symmetric'] = wx.CheckBox(self, -1, '&Symmetric')
## auto raster
self.autobut = wx.Button(self, -1, 'Calculate spacing and angle using the following parameters:')
self.Bind(wx.EVT_BUTTON, self.onAutoButton, self.autobut)
self.widgets['raster preset'] = PresetChoice(self, -1)
presets = self.node.presetsclient.getPresetNames()
self.widgets['raster preset'].setChoices(presets)
self.widgets['raster overlap'] = FloatEntry(self, -1, chars=8)
szauto = wx.GridBagSizer(5, 5)
szauto.Add(self.autobut, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Raster Preset')
szauto.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster preset'], (1, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Overlap percent')
szauto.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster overlap'], (2, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
movetypes = self.node.calclients.keys()
self.widgets['raster movetype'] = Choice(self, -1, choices=movetypes)
label = wx.StaticText(self, -1, 'Move Type')
szauto.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster movetype'], (3, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbszauto.Add(szauto, 1, wx.EXPAND|wx.ALL,5)
szraster = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'XY symmetry:')
szraster.Add(label, (0,0), (1,1) , wx.ALIGN_CENTER_VERTICAL)
self.Bind(wx.EVT_CHECKBOX, self.onToggleSymm, self.widgets['raster symmetric'])
szraster.Add(self.widgets['raster symmetric'], (0,1), (1,2) , wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
self.widgets['raster symmetric'].SetMinSize((120,30))
label = wx.StaticText(self, -1, 'Spacing (x,y):')
szraster.Add(label, (1,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szraster.Add(self.widgets['raster spacing'], (1,1), (1,1),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szraster.Add(self.widgets['raster spacing asymm'], (1,2), (1,1),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Num points (x,y):')
szraster.Add(label, (2,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szraster.Add(self.widgets['raster limit'], (2,1), (1,1),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szraster.Add(self.widgets['raster limit asymm'], (2,2), (1,1),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szraster.AddGrowableCol(1)
label = wx.StaticText(self, -1, 'Angle:')
szraster.Add(label, (3,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szraster.Add(self.widgets['raster angle'], (3,1), (1,2),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_CENTER_HORIZONTAL)
szraster.Add(self.widgets['raster center on image'], (4,0), (1,3),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_CENTER_HORIZONTAL)
self.Bind(wx.EVT_CHECKBOX, self.onCheckBox, self.widgets['raster center on image'])
label = wx.StaticText(self, -1, 'Center on x,y:')
szraster.Add(label, (5,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szraster.Add(self.widgets['raster center x'], (5,1), (1,1), wx.ALIGN_CENTER_VERTICAL)
szraster.Add(self.widgets['raster center y'], (5,2), (1,1), wx.ALIGN_CENTER_VERTICAL)
if self.widgets['raster center on image'].GetValue():
self.widgets['raster center x'].Enable(False)
self.widgets['raster center y'].Enable(False)
if self.widgets['raster symmetric'].GetValue():
self.widgets['raster spacing asymm'].Enable(False)
self.widgets['raster limit asymm'].Enable(False)
self.widgets['raster spacing asymm'].SetValue(None)
self.widgets['raster limit asymm'].SetValue(None)
else:
self.widgets['raster spacing asymm'].Enable(True)
self.widgets['raster limit asymm'].Enable(True)
sbszraster.Add(szraster, 1, wx.EXPAND|wx.ALL, 5)
self.btest = wx.Button(self, -1, 'Test')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.btest, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szbutton.AddGrowableCol(0)
self.Bind(wx.EVT_BUTTON, self.onTestButton, self.btest)
return [sbszauto,sbszraster, szbutton]
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Spacing/Angle Calculator')
sbszauto = wx.StaticBoxSizer(sb, wx.VERTICAL)
szoptions = wx.GridBagSizer(5, 5)
## auto raster
self.widgets['raster preset'] = PresetChoice(self, -1)
presets = self.node.presetsclient.getPresetNames()
self.widgets['raster preset'].setChoices(presets)
self.widgets['raster overlap'] = FloatEntry(self, -1, chars=8)
movetypes = self.node.calclients.keys()
self.widgets['raster movetype'] = Choice(self, -1, choices=movetypes)
self.autobut = wx.Button(
self, -1,
'Calculate spacing and angle using the following parameters:')
szauto = wx.GridBagSizer(5, 5)
szauto.Add(self.autobut, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Raster Preset')
szauto.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster preset'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Overlap percent')
szauto.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster overlap'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Move Type')
szauto.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szauto.Add(self.widgets['raster movetype'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sbszauto.Add(szauto, 1, wx.EXPAND | wx.ALL, 5)
self.Bind(wx.EVT_BUTTON, self.onAutoButton, self.autobut)
## end of auto raster
szoptions.Add(sbszauto, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Raster Spacing')
self.widgets['raster spacing'] = FloatEntry(self, -1, chars=8)
szoptions.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['raster spacing'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Raster Angle')
self.widgets['raster angle'] = FloatEntry(self, -1, chars=8)
szoptions.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['raster angle'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
szbutton = wx.GridBagSizer(5, 5)
self.bclear = wx.Button(self, -1, 'Clear Targets')
szbutton.Add(self.bclear, (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_LEFT)
szbutton.AddGrowableCol(0)
self.Bind(wx.EVT_BUTTON, self.onClearButton, self.bclear)
self.btest = wx.Button(self, -1, 'Test')
szbutton.Add(self.btest, (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
szbutton.AddGrowableCol(1)
self.Bind(wx.EVT_BUTTON, self.onTestButton, self.btest)
return [szoptions, szbutton]
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sbr = wx.StaticBox(self, -1, 'Target Raster')
sbszr = wx.StaticBoxSizer(sbr, wx.VERTICAL)
sbcalc = wx.StaticBox(self, -1, 'Spacing/Angle Calculator')
sbszcalc = wx.StaticBoxSizer(sbcalc, wx.VERTICAL)
sblimit = wx.StaticBox(self, -1, 'Limiting Shape')
sbszlimit = wx.StaticBoxSizer(sblimit, wx.VERTICAL)
sz = wx.GridBagSizer(5, 10)
self.widgets['bypass'] = wx.CheckBox(self, -1, 'Bypass Filter')
targettypes = ['acquisition', 'preview']
self.widgets['target type'] = wx.Choice(self, -1, choices=targettypes)
self.widgets['user check'] = wx.CheckBox(
self, -1, 'Verify filter before submitting')
self.widgets['raster spacing'] = FloatEntry(self, -1, min=0, chars=6)
self.widgets['raster angle'] = FloatEntry(self, -1, chars=8)
self.widgets['raster offset'] = wx.CheckBox(
self, -1, 'offset by half an image every other row')
self.widgets['ellipse angle'] = FloatEntry(self, -1, chars=6)
self.widgets['ellipse a'] = FloatEntry(self, -1, min=0, chars=6)
self.widgets['ellipse b'] = FloatEntry(self, -1, min=0, chars=6)
shapetypes = ['ellipse', 'rectangle']
self.widgets['limiting shape'] = wx.Choice(self,
-1,
choices=shapetypes)
movetypes = self.node.calclients.keys()
self.widgets['raster movetype'] = Choice(self, -1, choices=movetypes)
self.autobut = wx.Button(
self, -1,
'Calculate spacing and angle using the following parameters:')
self.Bind(wx.EVT_BUTTON, self.onAutoButton, self.autobut)
self.widgets['raster preset'] = PresetChoice(self, -1)
presets = self.node.presetsclient.getPresetNames()
self.widgets['raster preset'].setChoices(presets)
self.widgets['raster overlap'] = FloatEntry(self, -1, chars=8)
## filter
sztype = wx.GridBagSizer(0, 5)
sztype.Add(self.widgets['bypass'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Convoluting Target Type')
sztype.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sztype.Add(self.widgets['target type'], (0, 2), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sztype.Add(self.widgets['user check'], (1, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sztype.AddGrowableCol(0)
sz.Add(sztype, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
## auto raster calculator
szcalc = wx.GridBagSizer(5, 5)
szcalc.Add(self.autobut, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Preset for raster')
szcalc.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcalc.Add(self.widgets['raster preset'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Overlap Percent')
szcalc.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcalc.Add(self.widgets['raster overlap'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Move Type')
szcalc.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcalc.Add(self.widgets['raster movetype'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sbszcalc.Add(szcalc, 0, wx.ALIGN_CENTER | wx.ALL, 5)
sz.Add(sbszcalc, (1, 0), (1, 2), wx.EXPAND)
## raster
szr = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Spacing')
szr.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szr.Add(self.widgets['raster spacing'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'pixels in parent image')
szr.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Angle')
szr.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szr.Add(self.widgets['raster angle'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'degrees')
szr.Add(label, (1, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szr.Add(self.widgets['raster offset'], (2, 0), (1, 3),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Limit the raster by')
szr.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szr.Add(self.widgets['limiting shape'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
## raster limiting ellipse
szlimit = wx.GridBagSizer(0, 5)
label = wx.StaticText(self, -1, 'Angle to a-axis')
szlimit.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlimit.Add(self.widgets['ellipse angle'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'degrees')
szlimit.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, '2 * a-axis (Width)')
szlimit.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlimit.Add(self.widgets['ellipse a'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'raster spacings')
szlimit.Add(label, (1, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, '2 * b-axis (Height)')
szlimit.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlimit.Add(self.widgets['ellipse b'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'raster spacings')
szlimit.Add(label, (2, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbszlimit.Add(szlimit, 0, wx.ALIGN_CENTER | wx.ALL, 5)
szr.Add(sbszlimit, (4, 0), (1, 3), wx.EXPAND)
sbszr.Add(szr, 0, wx.ALIGN_CENTER | wx.ALL, 5)
sz.Add(sbszr, (2, 0), (1, 2), wx.EXPAND)
#test button
testbut = wx.Button(self, -1, 'test')
sz.Add(testbut, (3, 0), (1, 2), wx.ALIGN_RIGHT)
self.Bind(wx.EVT_BUTTON, self.onTestButton, testbut)
#sb = wx.StaticBox(self, -1, 'Target Filter')
#sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
#sbsz.Add(sz, 0, wx.ALIGN_CENTER|wx.ALL, 5)
return [sz]
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Low Pass Filter (Phase Correlation)')
sbszlpf = wx.StaticBoxSizer(sb, wx.VERTICAL)
sb = wx.StaticBox(self, -1, 'Template Correlation')
sbsztemplate = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['template lpf'] = {}
self.widgets['template lpf']['sigma'] = FloatEntry(self,
-1,
min=0.0,
chars=4)
szlpf = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Sigma:')
szlpf.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlpf.Add(self.widgets['template lpf']['sigma'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
szlpf.AddGrowableCol(1)
sbszlpf.Add(szlpf, 1, wx.EXPAND | wx.ALL, 5)
self.widgets['template filename'] = Entry(self, -1, chars=12)
self.widgets['file diameter'] = IntEntry(self, -1, chars=4)
self.widgets['template diameter'] = IntEntry(self, -1, chars=4)
self.widgets['template type'] = Choice(self,
-1,
choices=self.node.cortypes)
self.widgets['template image min'] = FloatEntry(self, -1, chars=4)
szcor = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Use')
szcor.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcor.Add(self.widgets['template type'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'correlation')
szcor.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcorlimit = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Fill image values below')
szcorlimit.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szcorlimit.Add(self.widgets['template image min'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'with mean before correlation')
szcorlimit.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sztemplate = wx.GridBagSizer(5, 5)
sztemplate.Add(szcor, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
sztemplate.Add(szcorlimit, (1, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Template Filename')
sztemplate.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sztemplate.Add(self.widgets['template filename'], (2, 1), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Original Template Diameter')
sztemplate.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sztemplate.Add(self.widgets['file diameter'], (3, 1), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Final Template Diameter')
sztemplate.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sztemplate.Add(self.widgets['template diameter'], (4, 1), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
sbsztemplate.Add(sztemplate, 1, wx.EXPAND | wx.ALL, 5)
self.btest = wx.Button(self, -1, 'Test')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.btest, (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
szbutton.AddGrowableCol(0)
self.Bind(wx.EVT_BUTTON, self.onTestButton, self.btest)
return [sbsztemplate, sbszlpf, szbutton]
def addSettings(self):
sbsim = wx.StaticBox(self, -1, 'Simulated Target Loop')
sbszsim = wx.StaticBoxSizer(sbsim, wx.VERTICAL)
sbeval = wx.StaticBox(self, -1, 'Evaluate Image Stats')
sbsz_evaluate = wx.StaticBoxSizer(sbeval, wx.VERTICAL)
# move type
movetypes = self.node.getMoveTypes()
self.widgets['move type'] = Choice(self, -1, choices=movetypes)
szmovetype = wx.GridBagSizer(5, 5)
szmovetype.Add(wx.StaticText(self, -1, 'Use'),
(0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
szmovetype.Add(self.widgets['move type'],
(0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
szmovetype.Add(wx.StaticText(self, -1, 'to move to target'),
(0, 2), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
# pause time
self.widgets['pause time'] = FloatEntry(self, -1,
min=0.0,
allownone=False,
chars=4,
value='0.0')
szpausetime = wx.GridBagSizer(5, 5)
szpausetime.Add(wx.StaticText(self, -1, 'Wait'),
(0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
szpausetime.Add(self.widgets['pause time'],
(0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
szpausetime.Add(wx.StaticText(self, -1, 'seconds before acquiring image'),
(0, 2), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
# preset order
presets = self.node.presetsclient.getPresetNames()
self.widgets['preset order'] = EditPresetOrder(self, -1)
self.widgets['preset order'].setChoices(presets)
# extra pause between presets
self.widgets['pause between time'] = FloatEntry(self, -1,
min=0.0,
allownone=False,
chars=4,
value='0.0')
szpausebtime = wx.GridBagSizer(5, 5)
szpausebtime.Add(wx.StaticText(self, -1, 'Wait'),
(0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
szpausebtime.Add(self.widgets['pause between time'],
(0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
szpausebtime.Add(wx.StaticText(self, -1, 'extra seconds between presets'),
(0, 2), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
# misc. checkboxes
self.widgets['correct image'] = wx.CheckBox(self, -1, 'Correct image')
self.widgets['save integer'] = wx.CheckBox(self, -1, 'Float->Integer')
self.widgets['display image'] = wx.CheckBox(self, -1, 'Display image')
self.widgets['save image'] = wx.CheckBox(self, -1, 'Save image to database')
self.widgets['emission off'] = wx.CheckBox(self, -1, 'Turn emission off upon timeout')
self.widgets['wait for process'] = wx.CheckBox(self, -1,
'Wait for a node to process the image')
self.widgets['wait for rejects'] = wx.CheckBox(self, -1,
'Publish and wait for rejected targets')
self.widgets['wait for reference'] = wx.CheckBox(self, -1,
'Publish and wait for the reference target')
self.widgets['adjust for transform'] = Choice(self, -1, choices=['no', 'one', 'all'])
self.widgets['use parent mover'] = wx.CheckBox(self, -1, 'Use ancestor image mover in adjustment')
self.widgets['drift between'] = wx.CheckBox(self, -1, 'Declare drift between targets')
self.widgets['background'] = wx.CheckBox(self, -1, 'Acquire in the background')
self.widgets['use parent tilt'] = wx.CheckBox(self, -1, 'Tilt the stage like its parent image')
self.widgets['adjust time by tilt'] = wx.CheckBox(self, -1, 'Adjust exposure time by tilt')
self.widgets['reset tilt'] = wx.CheckBox(self, -1, 'Reset stage when done')
if not hide_incomplete:
self.widgets['correct image shift coma'] = wx.CheckBox(self, -1, 'Correct image shift coma effect')
self.widgets['target offset row'] = IntEntry(self, -1, chars=6)
self.widgets['target offset col'] = IntEntry(self, -1, chars=6)
self.widgets['park after target'] = wx.CheckBox(self, -1, 'Park after every target acquired')
self.widgets['park after list'] = wx.CheckBox(self, -1, 'Park after every target list')
# simulate loop settings
self.widgets['wait time'] = FloatEntry(self, -1, min=0.0, chars=6)
self.widgets['iterations'] = IntEntry(self, -1, min=0.0, chars=6)
szwaittime = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Wait Time:')
szwaittime.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szwaittime.Add(self.widgets['wait time'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'seconds')
szwaittime.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sziterations = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Iterations:')
sziterations.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sziterations.Add(self.widgets['iterations'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
szsim = wx.GridBagSizer(5, 5)
szsim.Add(szwaittime, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szsim.Add(sziterations, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbszsim.Add(szsim, 0, wx.ALIGN_CENTER)
szmover = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Mover:')
self.widgets['mover'] = Choice(self, -1, choices=['presets manager','navigator'])
szmover.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmover.Add(self.widgets['mover'], (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
szmoveprec = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Navigator Target Tolerance (m):')
self.widgets['move precision'] = FloatEntry(self, -1, min=0.0, chars=6)
szmoveprec.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmoveprec.Add(self.widgets['move precision'], (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Navigator Acceptable Tolerance (m):')
self.widgets['accept precision'] = FloatEntry(self, -1, min=0.0, chars=6)
szmoveprec.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmoveprec.Add(self.widgets['accept precision'], (1, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
self.widgets['final image shift'] = wx.CheckBox(self, -1, 'Final Image Shift')
szmoveprec.Add(self.widgets['final image shift'], (2,0), (1,2))
sz_target_type = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Process')
sz_target_type.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.widgets['process target type'] = Choice(self, -1, choices=leginon.targethandler.target_types)
sz_target_type.Add(self.widgets['process target type'], (0, 1), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'targets')
sz_target_type.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
# settings sizer
sz = wx.GridBagSizer(5, 5)
sz_save = wx.GridBagSizer(0, 0)
sz_save.Add(self.widgets['save image'], (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz_save.Add(self.widgets['save integer'], (1, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz_save.Add(self.widgets['correct image'], (2, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz_save.Add(self.widgets['display image'], (3, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz_emission = wx.GridBagSizer(0, 0)
sz_emission.Add(self.widgets['emission off'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz_tilt = wx.GridBagSizer(0, 0)
sz_tilt.Add(self.widgets['adjust time by tilt'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz_tilt.Add(self.widgets['use parent tilt'], (1, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz_tilt.Add(self.widgets['reset tilt'], (2, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
if not hide_incomplete:
sz_tilt.Add(self.widgets['correct image shift coma'], (3, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
self.widgets['bad stats response'] = Choice(self, -1, choices=['Continue', 'Pause', 'Abort one','Abort all'])
self.widgets['low mean'] = FloatEntry(self, -1, chars=4)
self.widgets['high mean'] = FloatEntry(self, -1, chars=4)
passwordbut = wx.Button(self, -1, 'Enter Email Password')
self.Bind(wx.EVT_BUTTON, self.onEnterPassword, passwordbut)
sz_response = wx.BoxSizer(wx.HORIZONTAL)
sz_response.Add(self.widgets['bad stats response'])
sz_response.Add(wx.StaticText(self, -1, ' target list(s)'))
sz_evaluate = wx.BoxSizer(wx.HORIZONTAL)
sz_evaluate.Add(wx.StaticText(self, -1, 'between'))
sz_evaluate.Add(self.widgets['low mean'])
sz_evaluate.Add(wx.StaticText(self, -1, 'and'))
sz_evaluate.Add(self.widgets['high mean'])
sbsz_evaluate.Add(sz_response, 0, wx.ALIGN_CENTER|wx.ALL, 0)
sbsz_evaluate.Add(wx.StaticText(self, -1, 'when image mean is NOT'), 0, wx.ALIGN_LEFT)
sbsz_evaluate.Add(sz_evaluate, 0, wx.ALIGN_CENTER|wx.ALL,0)
sbsz_evaluate.Add(passwordbut, 0, wx.ALIGN_CENTER|wx.ALL, 3)
sz_transform = wx.GridBagSizer(0, 0)
label = wx.StaticText(self, -1, 'Adjust target using')
sz_transform.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz_transform.Add(self.widgets['adjust for transform'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'ancestor(s)')
sz_transform.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz_transform.Add(self.widgets['use parent mover'],(1,0),(1,3))
sz_offset = wx.BoxSizer(wx.HORIZONTAL)
sz_offset.Add(wx.StaticText(self, -1, 'offset target x:'))
sz_offset.Add(self.widgets['target offset col'])
sz_offset.Add(wx.StaticText(self, -1, 'y:'))
sz_offset.Add(self.widgets['target offset row'])
sz_misc = wx.BoxSizer(wx.VERTICAL)
sz_misc.Add(self.widgets['wait for process'])
sz_misc.Add(self.widgets['wait for rejects'])
sz_misc.Add(self.widgets['wait for reference'])
sz_misc.Add(sz_transform)
sz_misc.Add(sz_offset)
sz_misc.Add(self.widgets['drift between'])
sz_misc.Add(self.widgets['background'])
sz_misc.Add(self.widgets['park after target'])
sz_misc.Add(self.widgets['park after list'])
sz_misc.Add(sbsz_evaluate)
szright = wx.GridBagSizer(3, 3)
szright.Add(self.widgets['preset order'], (0, 0), (4, 1), wx.ALIGN_CENTER)
szright.Add(szpausebtime, (4,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szright.Add(szmover, (5,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szright.Add(szmoveprec, (6,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
szright.Add(sz_target_type, (7,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(szmovetype, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
sz.Add(szpausetime, (1, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
sz.Add(sz_save, (2,0), (2,1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(sz_emission, (4,0), (1,1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(sz_tilt, (5,0), (2,1), wx.ALIGN_TOP)
sz.Add(sbszsim, (7,0), (2,1), wx.ALIGN_BOTTOM)
sz.Add(sz_misc, (2,1), (7,1), wx.ALIGN_TOP)
sz.Add(szright, (0,2),(9,1), wx.ALIGN_TOP)
return sz
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Lattice Fitting')
sbszlattice = wx.StaticBoxSizer(sb, wx.VERTICAL)
sb = wx.StaticBox(self, -1, 'Hole Statistics')
sbszstats = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['lattice spacing'] = FloatEntry(self, -1, chars=6)
self.widgets['lattice tolerance'] = FloatEntry(self, -1, chars=6)
self.widgets['lattice hole radius'] = FloatEntry(self, -1, chars=6)
self.widgets['lattice zero thickness'] = FloatEntry(self, -1, chars=6)
extendlabel = wx.StaticText(self, -1, 'Extend Lattice')
self.widgets['lattice extend'] = Choice(self,
-1,
choices=self.node.extendtypes)
szlattice = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Spacing:')
szlattice.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlattice.Add(
self.widgets['lattice spacing'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Tolerance:')
szlattice.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlattice.Add(
self.widgets['lattice tolerance'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
szlattice.Add(extendlabel, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szlattice.Add(self.widgets['lattice extend'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
szlattice.AddGrowableCol(1)
sbszlattice.Add(szlattice, 1, wx.EXPAND | wx.ALL, 5)
szstats = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Radius:')
szstats.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szstats.Add(
self.widgets['lattice hole radius'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Reference Intensity:')
szstats.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szstats.Add(
self.widgets['lattice zero thickness'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
szstats.AddGrowableCol(1)
sbszstats.Add(szstats, 1, wx.EXPAND | wx.ALL, 5)
self.btest = wx.Button(self, -1, 'Test')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.btest, (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
szbutton.AddGrowableCol(0)
self.Bind(wx.EVT_BUTTON, self.onTestButton, self.btest)
return [sbszlattice, sbszstats, szbutton]
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Ice Thickness Threshold')
sbszice = wx.StaticBoxSizer(sb, wx.VERTICAL)
sb = wx.StaticBox(self, -1, 'Focus Template Thickness')
sbszftt = wx.StaticBoxSizer(sb, wx.VERTICAL)
sb = wx.StaticBox(self, -1, 'Target Template')
sbsztt = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['ice min mean'] = FloatEntry(self, -1, chars=6)
self.widgets['ice max mean'] = FloatEntry(self, -1, chars=6)
self.widgets['ice max std'] = FloatEntry(self, -1, chars=6)
self.widgets['focus hole'] = Choice(self, -1, choices=self.node.focustypes)
self.widgets['target template'] = wx.CheckBox(self, -1,
'Use target template')
self.widgets['focus template'] = leginon.gui.wx.TargetTemplate.Panel(self,
'Focus Target Template', autofill=True)
self.widgets['acquisition template'] = leginon.gui.wx.TargetTemplate.Panel(self,
'Acquisition Target Template', autofill=True)
self.widgets['focus template thickness'] = wx.CheckBox(self, -1,
'Use focus template thickness and limit to one focus target')
self.widgets['focus stats radius'] = IntEntry(self, -1, chars=6)
self.widgets['focus min mean thickness'] = FloatEntry(self, -1, chars=6)
self.widgets['focus max mean thickness'] = FloatEntry(self, -1, chars=6)
self.widgets['focus max stdev thickness'] = FloatEntry(self, -1, chars=6)
szice = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Min. mean:')
szice.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szice.Add(self.widgets['ice min mean'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Max. mean:')
szice.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szice.Add(self.widgets['ice max mean'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Max. stdev.:')
szice.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szice.Add(self.widgets['ice max std'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Focus hole selection:')
szice.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szice.Add(self.widgets['focus hole'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szice.AddGrowableCol(1)
sbszice.Add(szice, 1, wx.EXPAND|wx.ALL, 5)
szftt = wx.GridBagSizer(5, 5)
szftt.Add(self.widgets['focus template thickness'], (0, 0), (1, 2),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Stats. radius:')
szftt.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szftt.Add(self.widgets['focus stats radius'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Min. mean thickness:')
szftt.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szftt.Add(self.widgets['focus min mean thickness'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Max. mean thickness:')
szftt.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szftt.Add(self.widgets['focus max mean thickness'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Max. std. thickness:')
szftt.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szftt.Add(self.widgets['focus max stdev thickness'], (4, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT)
szftt.AddGrowableCol(1)
sbszftt.Add(szftt, 1, wx.EXPAND|wx.ALL, 5)
sztt = wx.GridBagSizer(5, 5)
sztt.Add(self.widgets['target template'], (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sztt.Add(sbszftt, (1, 0), (3, 1), wx.ALIGN_CENTER)
sztt.Add(self.widgets['focus template'], (0, 1), (2, 1), wx.ALIGN_CENTER|wx.EXPAND)
sztt.Add(self.widgets['acquisition template'], (2, 1), (2, 1), wx.ALIGN_CENTER|wx.EXPAND)
sztt.AddGrowableCol(1)
sztt.AddGrowableRow(0)
sztt.AddGrowableRow(2)
sbsztt.Add(sztt, 1, wx.EXPAND|wx.ALL, 5)
self.bice = wx.Button(self, -1, '&Test targeting')
self.cice = wx.Button(self, -1, '&Clear targets')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.cice, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_LEFT)
szbutton.Add(self.bice, (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT)
szbutton.AddGrowableCol(1)
self.Bind(wx.EVT_BUTTON, self.onTestButton, self.bice)
self.Bind(wx.EVT_BUTTON, self.onClearButton, self.cice)
self.growrows = [False, True, False,]
return [sbszice, sbsztt, szbutton]
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
szoptions = wx.GridBagSizer(5, 5)
self.widgets['autofinder'] = wx.CheckBox(self, -1,
'Enable auto targeting')
szoptions.Add(self.widgets['autofinder'], (0, 0), (1, 2),
wx.ALIGN_CENTER_VERTICAL)
choices = [
'Limit by Sections', 'Sections Only', 'Tissue only',
'Regions from Centers'
]
self.widgets['find section options'] = Choice(self,
-1,
choices=choices)
label = wx.StaticText(self, -1, 'Finding Mode')
szoptions.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['find section options'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1,
'Initial Minimum Region Area (% of tile area)')
self.widgets['min region area'] = FloatEntry(self, -1, chars=8)
szoptions.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['min region area'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Maximum Region Area (% of tile area)')
self.widgets['max region area'] = FloatEntry(self, -1, chars=8)
szoptions.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['max region area'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Vertex Evolution Limit')
self.widgets['ve limit'] = FloatEntry(self, -1, chars=8)
szoptions.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['ve limit'], (4, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Region Min Threshold')
self.widgets['min threshold'] = FloatEntry(self, -1, chars=8)
szoptions.Add(label, (5, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['min threshold'], (5, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Section/Background Threshold')
self.widgets['max threshold'] = FloatEntry(self, -1, chars=8)
szoptions.Add(label, (6, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['max threshold'], (6, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Max Ellipse Axis Ratio')
self.widgets['axis ratio'] = FloatEntry(self, -1, chars=8)
szoptions.Add(label, (7, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szoptions.Add(self.widgets['axis ratio'], (7, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
szsections = wx.GridBagSizer(6, 6)
label = wx.StaticText(self, -1, 'Per-Section Area (% of tile area)')
self.widgets['section area'] = FloatEntry(self, -1, chars=8)
szsections.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szsections.Add(self.widgets['section area'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Maximum Number of Section per Grid')
self.widgets['max sections'] = IntEntry(self, -1, min=1, chars=4)
szsections.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szsections.Add(self.widgets['max sections'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(
self, -1, 'Per-Section Area Modification Thershold (% of current)')
self.widgets['adjust section area'] = FloatEntry(self, -1, chars=8)
szsections.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szsections.Add(self.widgets['adjust section area'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
szbutton = wx.GridBagSizer(7, 7)
self.bclear = wx.Button(self, -1, 'Clear Regions')
szbutton.Add(self.bclear, (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_LEFT)
szbutton.AddGrowableCol(0)
self.Bind(wx.EVT_BUTTON, self.onClearButton, self.bclear)
self.btest = wx.Button(self, -1, 'Test')
szbutton.Add(self.btest, (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
szbutton.AddGrowableCol(1)
self.Bind(wx.EVT_BUTTON, self.onTestButton, self.btest)
return [szoptions, szsections, szbutton]
def initParameterChoice(self):
self.parameter_choice = Choice(self.toolbar, -1, choices=['Beam Tilt X','Beam Tilt Y','Defocus', 'Stage Z'])
par = 'Beam Tilt X'
self.parameter_choice.SetStringSelection(par)
threading.Thread(target=self.node.setParameterChoice, args=(par,)).start()
def initialize(self):
sizers = leginon.gui.wx.Acquisition.ScrolledSettings.initialize(self)
sb = wx.StaticBox(self, -1, 'Tilt Imaging and Correlation')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
sizer = wx.GridBagSizer(5, 5)
self.widgets['tableau type'] = Choice(self,
-1,
choices=self.node.tableau_types)
label = wx.StaticText(self, -1, 'Tableau Type (method-display):')
sizer.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['tableau type'], (0, 1), (1, 1),
wx.ALIGN_CENTER)
self.widgets['beam tilt'] = FloatEntry(self,
-1,
min=0.0,
allownone=False,
chars=6,
value='0.005')
bt_sizer = wx.GridBagSizer(5, 5)
bt_sizer.Add(self.widgets['beam tilt'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
bt_sizer.Add(wx.StaticText(self, -1, 'radian'), (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Beam Tilt:')
sizer.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(bt_sizer, (1, 1), (1, 1), wx.ALIGN_CENTER)
self.widgets['sites'] = IntEntry(self,
-1,
min=0,
allownone=False,
chars=4,
value='0')
label = wx.StaticText(self, -1, 'Number of tilt directions:')
sizer.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['sites'], (2, 1), (1, 1), wx.ALIGN_CENTER)
self.widgets['startangle'] = FloatEntry(self,
-1,
min=0,
allownone=False,
chars=4,
value='0')
label = wx.StaticText(self, -1, 'Start Angle:')
sizer.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['startangle'], (3, 1), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'degrees')
sizer.Add(label, (3, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.widgets['correlation type'] = Choice(
self, -1, choices=self.node.correlation_types)
label = wx.StaticText(self, -1, 'Correlation Type:')
sizer.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['correlation type'], (4, 1), (1, 1),
wx.ALIGN_CENTER)
self.widgets['tableau binning'] = IntEntry(self,
-1,
min=1,
allownone=False,
chars=4,
value='2')
label = wx.StaticText(self, -1, 'Tableau Binning:')
sizer.Add(label, (5, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['tableau binning'], (5, 1), (1, 1),
wx.ALIGN_CENTER)
self.widgets['beam tilt count'] = IntEntry(self,
-1,
min=1,
allownone=False,
chars=4,
value='1')
label = wx.StaticText(self, -1, 'Beam Tilt Count:')
sizer.Add(label, (6, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['beam tilt count'], (6, 1), (1, 1),
wx.ALIGN_CENTER)
self.widgets['tableau split'] = IntEntry(self,
-1,
min=1,
allownone=False,
chars=4,
value='8')
label = wx.StaticText(self, -1, 'Tableau Split:')
sizer.Add(label, (7, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['tableau split'], (7, 1), (1, 1),
wx.ALIGN_CENTER)
sbsz.Add(sizer, 0, wx.ALIGN_CENTER_HORIZONTAL | wx.ALL, 5)
self.widgets['tableau type'].Bind(wx.EVT_CHOICE,
self.onTableauTypeChoice)
return sizers + [sbsz]