def onGenAOI(self, event):
nstart,nstop=mys.get_range()
for nc in range(nstop-nstart+1):
nsnap = nc + nstart
if(not mys.snap_exists(nsnap)):
continue
d = mys.d(nsnap)
my.mkdir(d+"stars")
my.mkdir(d+"dm")
cmd = "gen_spheres.py "+str(nsnap)+" 2" # 1 at end: centers from AHF. 2: after shrinking sphere
my.run(cmd)
my.done()
def onGenSpheres(self, event):
nstart, nstop = mys.get_range()
for nc in range(nstop - nstart + 1):
nsnap = nc + nstart
if (not mys.snap_exists(nsnap)):
continue
d = mys.d(nsnap)
my.mkdir(d + "dm")
if (not mys.is_dmonly()):
my.mkdir(d + "stars")
cmd = "cd " + d + " && gen_spheres.py " + str(nsnap) + " 1"
my.run(cmd)
my.done()
def onGenSpheres(self, event):
nstart,nstop=mys.get_range()
for nc in range(nstop-nstart+1):
nsnap = nc + nstart
if(not mys.snap_exists(nsnap)):
continue
d = mys.d(nsnap)
my.mkdir(d+"dm")
if(not mys.is_dmonly()):
my.mkdir(d+"stars");
cmd = "cd "+d+" && gen_spheres.py "+str(nsnap)+" 1"
my.run(cmd)
my.done()
def onGenAOI(self, event):
nstart, nstop = mys.get_range()
for nc in range(nstop - nstart + 1):
nsnap = nc + nstart
if (not mys.snap_exists(nsnap)):
continue
d = mys.d(nsnap)
my.mkdir(d + "stars")
my.mkdir(d + "dm")
cmd = "gen_spheres.py " + str(
nsnap
) + " 2" # 1 at end: centers from AHF. 2: after shrinking sphere
my.run(cmd)
my.done()
def onRunR2G(self, event):
nstart, nstop = mys.get_range()
print('nstart, nstop = ', nstart, nstop)
for nc in range(nstop - nstart + 1):
nsnap = nc + nstart
print('nsnap = ', nsnap)
if (not mys.snap_exists(nsnap)):
continue
d = mys.d(nsnap)
my.mkdir(d + "/r2g")
if (mys.is_dmonly()):
cmd = "mpirun -np 8 r2g -d " + d
else:
cmd = "mpirun -np 8 r2g -i " + d
print(cmd)
my.thread(cmd)
self.SetBackgroundColour("darkgreen")
my.done()
def onRunR2G(self, event):
nstart,nstop=mys.get_range()
print('nstart, nstop = ', nstart, nstop)
for nc in range(nstop-nstart+1):
nsnap = nc + nstart
print('nsnap = ', nsnap)
if(not mys.snap_exists(nsnap)):
continue
d = mys.d(nsnap)
my.mkdir(d+"/r2g")
if(mys.is_dmonly()):
cmd = "mpirun -np 8 r2g -d "+d
else:
cmd = "mpirun -np 8 r2g -i "+d
print(cmd)
my.thread(cmd)
self.SetBackgroundColour("darkgreen")
my.done()
def onFolderSetup(self, event):
print(" ")
print("folder setup")
nstop = mys.getNmax()
print('nstop = ',nstop)
for nc in range(nstop):
if(not mys.snap_exists(nc+1)):
continue
print("generating folders in output ",nc+1)
d=mys.d(nc+1)
print(d)
my.mkdir(d+'amr'); my.mv(d+"amr_*",d+"amr")
my.mkdir(d+'grav'); my.mv(d+"grav_*",d+'/grav')
my.mkdir(d+'part'); my.mv(d+'part_*',d+'/part')
if(not self.dmonly):
print("create folder hydro as well")
my.mkdir(d+'hydro'); my.mv(d+"hydro_*",d+'/hydro')
self.SetBackgroundColour("darkgreen")
my.done()
def OnPlot(self, event):
print("plot")
f=1 # scaling of sphere wrt rvir
vis = True; show = True; run = True;
my.mkdir(mys.simdir()+"/ana")
ddm = mys.simdir() + "/ana/dm/"; my.mkdir(ddm)
dgas = mys.simdir() + "/ana/gas/"; my.mkdir(dgas)
dstar= mys.simdir() + "/ana/stars/"; my.mkdir(dstar)
dpd = mys.simdir() + "/phasediag/"; my.mkdir(dpd)
nstart,nstop=mys.get_range()
x,y,z,r,snap=mys.getxyzrsnap(nstop)#TODO: nstart,nstop
xs,ys,zs,rs,snap=mys.getxyzrsnap_stars(nstart,nstop)
#x,y,z,r,snap=mys.mt_xyzrsnap(nstart,nstop)
#xs,ys,zs,rs,snap=mys.mt_xyzrsnap_stars(nstart,nstop)
for i in range(nstop-nstart+1):
nc = nstop-i
if(not mys.snap_exists(nc)):
continue
stri=str(nc).zfill(5)
print("nc = ",nc)
print(x[i], xs[i])
print(y[i], ys[i])
print(z[i], zs[i])
print(r[i], rs[i])
d = mys.d(nc)
# scale
if self.fix:
r[i]=0.002; rs[i]=0.002;
sx = str(x[i])
sy = str(y[i])
sz = str(z[i])
sr = str(r[i])
ssx= str(sx[i])
ssy= str(ys[i])
ssz= str(sz[i])
ssr= str(rs[i])
lma = str(mys.get_lma())
bndry = " "+sx+" "+sy+" "+sz+" "+sr+" "
bndryc =" -xc "+sx+" -yc "+sy+" -zc "+sz+" -rc "+sr+" "
#calc all pix, dep. on which option was clicked
if self.radio==0:
print("gas density")
ofname = dgas+"gas_boxall_"+stri+".png"
cmd1 = amr2map+" -typ 1 -lma "+lma+" -inp "+d+" -out "+dgas+"gas_boxall_"+stri
cmd1 = cmd1 +".dat -dir z "+bndryc
cmd2 = "map2img.py -l --colormap=hot "+dgas+"gas_boxall_"+stri+".dat "
cmd2 = cmd2+"-o "+ofname+" && xview "+ofname
print(dgas+"gas_boxall_"+stri+".png")
my.threadif(cmd1,cmd2,self.calc,vis,show,run)
if self.radio==1:
print("gas pressure")
if(mys.is_dmonly()):
print("not available, dm only simulation!")
exit
cmd1 = amr2map + " -typ 5 -lma "+lma+" -inp "+d
cmd1 = cmd1+" -out "+dgas+"p_"+stri+".dat "+"-dir z "+bndryc
cmd2 = "map2img.py -l --colormap=hot "+dgas+"p_"+stri+".dat "
ofname = dgas+"p_"+stri+".png"
cmd2 = cmd2+" -o "+ofname+" && xview "+ofname
my.threadif(cmd1,cmd2,self.calc,vis,show,run)
if self.radio==2:
print("gas temperature")
cmd1 = amr2map+" -typ 18 -lma "+lma+" -inp "+d
cmd1 = cmd1+" -out "+dgas+"temp_"+stri+".dat "+"-dir z "+bndryc
cmd2 = "map2img.py -l --colormap=hot "+dgas+"temp_"+stri+".dat "
ofname = dgas+"temp_"+stri+".png"
cmd2 = cmd2+" -o "+ofname+" && xview "+ofname
my.threadif(cmd1,cmd2,self.calc,vis,show,run)
if self.radio==3:
print("DM contours")
# get DM particle positions for each halo
cmd1 = "get_sphere_dm -inp "+d+bndryc+" > "+ddm+"dm_"+stri+".dat"
cmd1+= "&& octreef "+ddm+"dm_"+stri+".dat > "+ddm+"rho_"+stri+".dat"
cmd2 ="vis_part_proj_dm.py "+bndry+" "\
+ddm+"dm_"+stri+".dat "+ddm+"dm_part_"+stri+".png"
ofname=ddm+"rho_"+stri+".dat "+ddm+"contour_"+stri+".png"
cmd2+="; vis_dm_contour.py "+bndry+" "\
+ofname+" && xview "+ofname
my.threadif(cmd1,cmd2,self.calc,vis,show,run)
if self.radio==4:
print("metallicity")
#cmd = "vis_parts.py stars.part"
#cmd = "get_sphere_stars -inp "+d\
#+" -xc "+sx+" -yc "+sy+" -zc "+sz+" -r "+sr+">ana/stars/stars_"+stri
cmd1 = "metal2map -inp "+d+" -out "+dstar+"stars_"+stri+".dat "
cmd1 = cmd1+"-nx 512 -ny 512 -dir z "+bndryc
cmd2 = "map2img.py -l --colormap=jet "+dstar+"stars_"+stri+".dat "
ofname = dstar+"stars_"+stri+".png"
cmd2 = cmd2+"-o "+ofname+" && xview "+ofname
my.threadif(cmd1,cmd2,self.calc,vis,show,run)
if self.radio==5:
print("phase diagram")
fn = dpd+"temp_"+str(nc).zfill(5)
cmd1 = "get_temp -inp "+d+" -out "+fn
cmd1+= " -lma "+lma+" -typ 18"
ofname=fn+".png"
cmd2 = "plot_temp_rho.py "+fn+" "+ofname+" && xview "+ofname
my.threadif(cmd1,cmd2,self.calc,vis,show,run)
if self.radio==6:
print("rho_dm(r)")
cmd1 = "gen_prof_dm.py "+str(nc)+" "+sx+" "+sy+" "+sz+" "+sr;
ofname = ddm+"prof_"+stri+".png "
cmd2 = "plot_prof_sph.py "+ddm+"prof_"+stri+".dat "\
+ddm+"rho_"+stri+".dat "\
+ofname+sx+" "+sy+" "+sz+" "+str(mys.get_z(nc))+"&& xview "+ofname
my.threadif(cmd1,cmd2,self.calc,vis,show,run)
if self.radio==7:
print("rho_gas(r)")
cmd1 = "gen_prof_gas.py "+str(nc)+" "+sx+" "+sy+" "+sz+" "+sr+" "+lma;
ofname = dgas+"prof_"+stri+".png "
cmd2 = "plot_prof_sph.py "+dgas+"prof_"+stri+".dat "\
+dgas+"rho_"+stri+".dat "\
+ofname+sx+" "+sy+" "+sz+" && xview "+ofname
my.threadif(cmd1,cmd2,self.calc,vis,show,run)
if self.radio==8:
print("rho_star(r)")
cmd1 = "gen_prof_stars.py "+str(nc)+" "+sx+" "+sy+" "+sz+" "+sr;
ofname = dstar+"prof_"+stri+".png "
cmd2 = "plot_prof_sph.py "+dstar+"prof_"+stri+".dat "\
+dstar+"rho_"+stri+".dat "\
+ofname+sx+" "+sy+" "+sz+" && xview "+ofname
my.threadif(cmd1,cmd2,self.calc,vis,show,run)
if self.radio==9:
print("SFR")
cmd1 = "count_stars -inp "+d+bndryc+" >> "+dstar+"star_counts.dat"
#cmd2 = "plot_columns.py star_counts.dat 1 4"
cmd2 = "calc_sfr.py "+dstar+"star_counts.dat 0 4"
my.threadif(cmd1,cmd2,self.calc,vis,show,run)
if(not self.loop):
break
my.done()
def OnPlot(self, event):
print("plot")
f = 1 # scaling of sphere wrt rvir
vis = True
show = True
run = True
my.mkdir(mys.simdir() + "/ana")
ddm = mys.simdir() + "/ana/dm/"
my.mkdir(ddm)
dgas = mys.simdir() + "/ana/gas/"
my.mkdir(dgas)
dstar = mys.simdir() + "/ana/stars/"
my.mkdir(dstar)
dpd = mys.simdir() + "/phasediag/"
my.mkdir(dpd)
nstart, nstop = mys.get_range()
x, y, z, r, snap = mys.getxyzrsnap(nstop) #TODO: nstart,nstop
xs, ys, zs, rs, snap = mys.getxyzrsnap_stars(nstart, nstop)
#x,y,z,r,snap=mys.mt_xyzrsnap(nstart,nstop)
#xs,ys,zs,rs,snap=mys.mt_xyzrsnap_stars(nstart,nstop)
for i in range(nstop - nstart + 1):
nc = nstop - i
if (not mys.snap_exists(nc)):
continue
stri = str(nc).zfill(5)
print("nc = ", nc)
print(x[i], xs[i])
print(y[i], ys[i])
print(z[i], zs[i])
print(r[i], rs[i])
d = mys.d(nc)
# scale
if self.fix:
r[i] = 0.002
rs[i] = 0.002
sx = str(x[i])
sy = str(y[i])
sz = str(z[i])
sr = str(r[i])
ssx = str(sx[i])
ssy = str(ys[i])
ssz = str(sz[i])
ssr = str(rs[i])
lma = str(mys.get_lma())
bndry = " " + sx + " " + sy + " " + sz + " " + sr + " "
bndryc = " -xc " + sx + " -yc " + sy + " -zc " + sz + " -rc " + sr + " "
#calc all pix, dep. on which option was clicked
if self.radio == 0:
print("gas density")
ofname = dgas + "gas_boxall_" + stri + ".png"
cmd1 = amr2map + " -typ 1 -lma " + lma + " -inp " + d + " -out " + dgas + "gas_boxall_" + stri
cmd1 = cmd1 + ".dat -dir z " + bndryc
cmd2 = "map2img.py -l --colormap=hot " + dgas + "gas_boxall_" + stri + ".dat "
cmd2 = cmd2 + "-o " + ofname + " && xview " + ofname
print(dgas + "gas_boxall_" + stri + ".png")
my.threadif(cmd1, cmd2, self.calc, vis, show, run)
if self.radio == 1:
print("gas pressure")
if (mys.is_dmonly()):
print("not available, dm only simulation!")
exit
cmd1 = amr2map + " -typ 5 -lma " + lma + " -inp " + d
cmd1 = cmd1 + " -out " + dgas + "p_" + stri + ".dat " + "-dir z " + bndryc
cmd2 = "map2img.py -l --colormap=hot " + dgas + "p_" + stri + ".dat "
ofname = dgas + "p_" + stri + ".png"
cmd2 = cmd2 + " -o " + ofname + " && xview " + ofname
my.threadif(cmd1, cmd2, self.calc, vis, show, run)
if self.radio == 2:
print("gas temperature")
cmd1 = amr2map + " -typ 18 -lma " + lma + " -inp " + d
cmd1 = cmd1 + " -out " + dgas + "temp_" + stri + ".dat " + "-dir z " + bndryc
cmd2 = "map2img.py -l --colormap=hot " + dgas + "temp_" + stri + ".dat "
ofname = dgas + "temp_" + stri + ".png"
cmd2 = cmd2 + " -o " + ofname + " && xview " + ofname
my.threadif(cmd1, cmd2, self.calc, vis, show, run)
if self.radio == 3:
print("DM contours")
# get DM particle positions for each halo
cmd1 = "get_sphere_dm -inp " + d + bndryc + " > " + ddm + "dm_" + stri + ".dat"
cmd1 += "&& octreef " + ddm + "dm_" + stri + ".dat > " + ddm + "rho_" + stri + ".dat"
cmd2 ="vis_part_proj_dm.py "+bndry+" "\
+ddm+"dm_"+stri+".dat "+ddm+"dm_part_"+stri+".png"
ofname = ddm + "rho_" + stri + ".dat " + ddm + "contour_" + stri + ".png"
cmd2+="; vis_dm_contour.py "+bndry+" "\
+ofname+" && xview "+ofname
my.threadif(cmd1, cmd2, self.calc, vis, show, run)
if self.radio == 4:
print("metallicity")
#cmd = "vis_parts.py stars.part"
#cmd = "get_sphere_stars -inp "+d\
#+" -xc "+sx+" -yc "+sy+" -zc "+sz+" -r "+sr+">ana/stars/stars_"+stri
cmd1 = "metal2map -inp " + d + " -out " + dstar + "stars_" + stri + ".dat "
cmd1 = cmd1 + "-nx 512 -ny 512 -dir z " + bndryc
cmd2 = "map2img.py -l --colormap=jet " + dstar + "stars_" + stri + ".dat "
ofname = dstar + "stars_" + stri + ".png"
cmd2 = cmd2 + "-o " + ofname + " && xview " + ofname
my.threadif(cmd1, cmd2, self.calc, vis, show, run)
if self.radio == 5:
print("phase diagram")
fn = dpd + "temp_" + str(nc).zfill(5)
cmd1 = "get_temp -inp " + d + " -out " + fn
cmd1 += " -lma " + lma + " -typ 18"
ofname = fn + ".png"
cmd2 = "plot_temp_rho.py " + fn + " " + ofname + " && xview " + ofname
my.threadif(cmd1, cmd2, self.calc, vis, show, run)
if self.radio == 6:
print("rho_dm(r)")
cmd1 = "gen_prof_dm.py " + str(
nc) + " " + sx + " " + sy + " " + sz + " " + sr
ofname = ddm + "prof_" + stri + ".png "
cmd2 = "plot_prof_sph.py "+ddm+"prof_"+stri+".dat "\
+ddm+"rho_"+stri+".dat "\
+ofname+sx+" "+sy+" "+sz+" "+str(mys.get_z(nc))+"&& xview "+ofname
my.threadif(cmd1, cmd2, self.calc, vis, show, run)
if self.radio == 7:
print("rho_gas(r)")
cmd1 = "gen_prof_gas.py " + str(
nc) + " " + sx + " " + sy + " " + sz + " " + sr + " " + lma
ofname = dgas + "prof_" + stri + ".png "
cmd2 = "plot_prof_sph.py "+dgas+"prof_"+stri+".dat "\
+dgas+"rho_"+stri+".dat "\
+ofname+sx+" "+sy+" "+sz+" && xview "+ofname
my.threadif(cmd1, cmd2, self.calc, vis, show, run)
if self.radio == 8:
print("rho_star(r)")
cmd1 = "gen_prof_stars.py " + str(
nc) + " " + sx + " " + sy + " " + sz + " " + sr
ofname = dstar + "prof_" + stri + ".png "
cmd2 = "plot_prof_sph.py "+dstar+"prof_"+stri+".dat "\
+dstar+"rho_"+stri+".dat "\
+ofname+sx+" "+sy+" "+sz+" && xview "+ofname
my.threadif(cmd1, cmd2, self.calc, vis, show, run)
if self.radio == 9:
print("SFR")
cmd1 = "count_stars -inp " + d + bndryc + " >> " + dstar + "star_counts.dat"
#cmd2 = "plot_columns.py star_counts.dat 1 4"
cmd2 = "calc_sfr.py " + dstar + "star_counts.dat 0 4"
my.threadif(cmd1, cmd2, self.calc, vis, show, run)
if (not self.loop):
break
my.done()