def test_irsync_r_coll_to_coll(self):
base_name_source = "test_irsync_r_coll_to_coll_source"
file_names = set(self.iput_r_large_collection(
self.user0, base_name_source, file_count=1000, file_size=100)[1])
base_name_target = "test_irsync_r_coll_to_coll_target"
self.user0.assert_icommand("irsync -r i:" + base_name_source + " i:" + base_name_target, "EMPTY")
self.user0.assert_icommand("ils", 'STDOUT_SINGLELINE', base_name_source)
self.user0.assert_icommand("ils", 'STDOUT_SINGLELINE', base_name_target)
rods_files_source = set(lib.ils_output_to_entries(self.user0.run_icommand(['ils', base_name_source])[1]))
self.assertTrue(file_names == rods_files_source,
msg="Files missing:\n" + str(file_names - rods_files_source) + "\n\n" +
"Extra files:\n" + str(rods_files_source - file_names))
rods_files_target = set(lib.ils_output_to_entries(self.user0.run_icommand(['ils', base_name_target])[1]))
self.assertTrue(file_names == rods_files_target,
msg="Files missing:\n" + str(file_names - rods_files_target) + "\n\n" +
"Extra files :\n" + str(rods_files_target - file_names))
vault_files_post_irsync_source = set(os.listdir(os.path.join(lib.get_vault_session_path(self.user0),
base_name_source)))
self.assertTrue(file_names == vault_files_post_irsync_source,
msg="Files missing from vault:\n" + str(file_names - vault_files_post_irsync_source) + "\n\n" +
"Extra files in vault:\n" + str(vault_files_post_irsync_source - file_names))
vault_files_post_irsync_target = set(os.listdir(os.path.join(lib.get_vault_session_path(self.user0),
base_name_target)))
self.assertTrue(file_names == vault_files_post_irsync_target,
msg="Files missing from vault:\n" + str(file_names - vault_files_post_irsync_target) + "\n\n" +
"Extra files in vault:\n" + str(vault_files_post_irsync_target - file_names))
def test_irsync_r_nested_coll_to_coll_large_files(self):
# test settings
depth = 4
files_per_level = 4
file_size = 1024*1024*40
# make local nested dirs
source_base_name = "test_irsync_r_nested_coll_to_coll_source"
dest_base_name = "test_irsync_r_nested_coll_to_coll_dest"
local_dir = os.path.join(self.testing_tmp_dir, source_base_name)
local_dirs = lib.make_deep_local_tmp_dir(local_dir, depth, files_per_level, file_size)
# iput dir
self.user0.assert_icommand("iput -r {local_dir}".format(**locals()), "EMPTY")
# sync collections
self.user0.assert_icommand("irsync -r i:{source_base_name} i:{dest_base_name}".format(**locals()), "EMPTY")
# compare files at each level
for dir, files in local_dirs.iteritems():
source_partial_path = dir.replace(self.testing_tmp_dir+'/', '', 1)
dest_partial_path = dir.replace(self.testing_tmp_dir+'/'+source_base_name, dest_base_name, 1)
# run ils on source subcollection
self.user0.assert_icommand(['ils', source_partial_path], 'STDOUT_SINGLELINE')
ils_out = lib.ils_output_to_entries(self.user0.run_icommand(['ils', source_partial_path])[1])
# compare local files with irods objects
local_files = set(files)
rods_files = set(lib.files_in_ils_output(ils_out))
self.assertTrue(local_files == rods_files,
msg="Files missing:\n" + str(local_files - rods_files) + "\n\n" +
"Extra files:\n" + str(rods_files - local_files))
# compare local files with files in vault
files_in_vault = set(lib.files_in_dir(os.path.join(lib.get_vault_session_path(self.user0),
source_partial_path)))
self.assertTrue(local_files == files_in_vault,
msg="Files missing from vault:\n" + str(local_files - files_in_vault) + "\n\n" +
"Extra files in vault:\n" + str(files_in_vault - local_files))
# now the same thing with dest subcollection
self.user0.assert_icommand(['ils', dest_partial_path], 'STDOUT_SINGLELINE')
ils_out = lib.ils_output_to_entries(self.user0.run_icommand(['ils', dest_partial_path])[1])
# compare local files with irods objects
local_files = set(files)
rods_files = set(lib.files_in_ils_output(ils_out))
self.assertTrue(local_files == rods_files,
msg="Files missing:\n" + str(local_files - rods_files) + "\n\n" +
"Extra files:\n" + str(rods_files - local_files))
# compare local files with files in vault
files_in_vault = set(lib.files_in_dir(os.path.join(lib.get_vault_session_path(self.user0),
dest_partial_path)))
self.assertTrue(local_files == files_in_vault,
msg="Files missing from vault:\n" + str(local_files - files_in_vault) + "\n\n" +
"Extra files in vault:\n" + str(files_in_vault - local_files))
def test_irsync_r_coll_to_coll(self):
base_name_source = "test_irsync_r_coll_to_coll_source"
file_names = set(
self.iput_r_large_collection(self.user0,
base_name_source,
file_count=1000,
file_size=100)[1])
base_name_target = "test_irsync_r_coll_to_coll_target"
self.user0.assert_icommand(
"irsync -r i:" + base_name_source + " i:" + base_name_target,
"EMPTY")
self.user0.assert_icommand("ils", 'STDOUT_SINGLELINE',
base_name_source)
self.user0.assert_icommand("ils", 'STDOUT_SINGLELINE',
base_name_target)
rods_files_source = set(
lib.ils_output_to_entries(
self.user0.run_icommand(['ils', base_name_source])[1]))
self.assertTrue(file_names == rods_files_source,
msg="Files missing:\n" +
str(file_names - rods_files_source) + "\n\n" +
"Extra files:\n" + str(rods_files_source - file_names))
rods_files_target = set(
lib.ils_output_to_entries(
self.user0.run_icommand(['ils', base_name_target])[1]))
self.assertTrue(
file_names == rods_files_target,
msg="Files missing:\n" + str(file_names - rods_files_target) +
"\n\n" + "Extra files :\n" + str(rods_files_target - file_names))
vault_files_post_irsync_source = set(
os.listdir(
os.path.join(lib.get_vault_session_path(self.user0),
base_name_source)))
self.assertTrue(file_names == vault_files_post_irsync_source,
msg="Files missing from vault:\n" +
str(file_names - vault_files_post_irsync_source) +
"\n\n" + "Extra files in vault:\n" +
str(vault_files_post_irsync_source - file_names))
vault_files_post_irsync_target = set(
os.listdir(
os.path.join(lib.get_vault_session_path(self.user0),
base_name_target)))
self.assertTrue(file_names == vault_files_post_irsync_target,
msg="Files missing from vault:\n" +
str(file_names - vault_files_post_irsync_target) +
"\n\n" + "Extra files in vault:\n" +
str(vault_files_post_irsync_target - file_names))
def test_irsync_r_dir_to_coll(self):
base_name = "test_irsync_r_dir_to_coll"
local_dir = os.path.join(self.testing_tmp_dir, base_name)
file_names = set(
lib.make_large_local_tmp_dir(local_dir,
file_count=1000,
file_size=100))
self.user0.assert_icommand(
"irsync -r " + local_dir + " i:" + base_name, "EMPTY")
self.user0.assert_icommand("ils", 'STDOUT_SINGLELINE', base_name)
rods_files = set(
lib.ils_output_to_entries(
self.user0.run_icommand(['ils', base_name])[1]))
self.assertTrue(file_names == rods_files,
msg="Files missing:\n" + str(file_names - rods_files) +
"\n\n" + "Extra files:\n" +
str(rods_files - file_names))
vault_files_post_irsync = set(
os.listdir(
os.path.join(lib.get_vault_session_path(self.user0),
base_name)))
self.assertTrue(file_names == vault_files_post_irsync,
msg="Files missing from vault:\n" +
str(file_names - vault_files_post_irsync) + "\n\n" +
"Extra files in vault:\n" +
str(vault_files_post_irsync - file_names))
def test_irsync_r_nested_dir_to_coll(self):
# test settings
depth = 10
files_per_level = 100
file_size = 100
# make local nested dirs
base_name = "test_irsync_r_nested_dir_to_coll"
local_dir = os.path.join(self.testing_tmp_dir, base_name)
local_dirs = lib.make_deep_local_tmp_dir(local_dir, depth, files_per_level, file_size)
# sync dir to coll
self.user0.assert_icommand("irsync -r {local_dir} i:{base_name}".format(**locals()), "EMPTY")
# compare files at each level
for dir, files in local_dirs.iteritems():
partial_path = dir.replace(self.testing_tmp_dir+'/', '', 1)
# run ils on subcollection
self.user0.assert_icommand(['ils', partial_path], 'STDOUT_SINGLELINE')
ils_out = lib.ils_output_to_entries(self.user0.run_icommand(['ils', partial_path])[1])
# compare local files with irods objects
local_files = set(files)
rods_files = set(lib.files_in_ils_output(ils_out))
self.assertTrue(local_files == rods_files,
msg="Files missing:\n" + str(local_files - rods_files) + "\n\n" +
"Extra files:\n" + str(rods_files - local_files))
def test_irsync_r_dir_to_coll(self):
# make test dir
dir_name = 'irsync_test_dir'
dir_path = os.path.abspath(dir_name)
local_files = lib.make_large_local_tmp_dir(
dir_path, self.config['test_file_count'], self.config['test_file_size'])
kwargs = {'dir_name': dir_name,
'collection': self.config['remote_home_coll']}
# sync dir with remote collection
self.admin_sessions[0].assert_icommand(
"irsync -r {dir_name} i:{collection}/{dir_name}".format(**kwargs))
# new collection should be there
self.admin_sessions[0].assert_icommand(
"ils -L {collection}/{dir_name}".format(**kwargs), 'STDOUT_SINGLELINE', dir_name)
# files should be there
rods_files = set(lib.ils_output_to_entries(
self.admin_sessions[0].run_icommand(['ils', "{collection}/{dir_name}".format(**kwargs)])[1]))
self.assertTrue(set(local_files) == rods_files)
# cleanup
self.admin_sessions[0].assert_icommand(
"irm -rf {collection}/{dir_name}".format(**kwargs))
shutil.rmtree(dir_path)
def test_irsync_r_nested_coll_to_coll_large_files(self):
# test settings
depth = 4
files_per_level = 4
file_size = 1024*1024*40
# make local nested dirs
source_base_name = "test_irsync_r_nested_coll_to_coll_source"
dest_base_name = "test_irsync_r_nested_coll_to_coll_dest"
local_dir = os.path.join(self.testing_tmp_dir, source_base_name)
local_dirs = lib.make_deep_local_tmp_dir(local_dir, depth, files_per_level, file_size)
# iput dir
self.user0.assert_icommand("iput -r {local_dir}".format(**locals()), "EMPTY")
# sync collections
self.user0.assert_icommand("irsync -r i:{source_base_name} i:{dest_base_name}".format(**locals()), "EMPTY")
# compare files at each level
for dir, files in local_dirs.iteritems():
source_partial_path = dir.replace(self.testing_tmp_dir+'/', '', 1)
dest_partial_path = dir.replace(self.testing_tmp_dir+'/'+source_base_name, dest_base_name, 1)
# run ils on source subcollection
self.user0.assert_icommand(['ils', source_partial_path], 'STDOUT_SINGLELINE')
ils_out = lib.ils_output_to_entries(self.user0.run_icommand(['ils', source_partial_path])[1])
# compare local files with irods objects
local_files = set(files)
rods_files = set(lib.files_in_ils_output(ils_out))
self.assertTrue(local_files == rods_files,
msg="Files missing:\n" + str(local_files - rods_files) + "\n\n" +
"Extra files:\n" + str(rods_files - local_files))
# now the same thing with dest subcollection
self.user0.assert_icommand(['ils', dest_partial_path], 'STDOUT_SINGLELINE')
ils_out = lib.ils_output_to_entries(self.user0.run_icommand(['ils', dest_partial_path])[1])
# compare local files with irods objects
local_files = set(files)
rods_files = set(lib.files_in_ils_output(ils_out))
self.assertTrue(local_files == rods_files,
msg="Files missing:\n" + str(local_files - rods_files) + "\n\n" +
"Extra files:\n" + str(rods_files - local_files))
def test_irsync_r_coll_to_coll(self):
# pick session(s) for the test
test_session = self.user_sessions[0]
# make test dir
dir_name = "irsync_test_dir"
dir_path = os.path.join(self.local_test_dir_path, dir_name)
local_files = lib.make_large_local_tmp_dir(
dir_path, self.config["test_file_count"], self.config["test_file_size"]
)
# test specific parameters
parameters = self.config.copy()
parameters["dir_path"] = dir_path
parameters["dir_name"] = dir_name
parameters["user_name"] = test_session.username
parameters["local_home_collection"] = test_session.home_collection
parameters["remote_home_collection"] = "/{remote_zone}/home/{user_name}#{local_zone}".format(**parameters)
# put dir in local collection
test_session.assert_icommand("iput -r {dir_path} {local_home_collection}/".format(**parameters))
# remove local test dir
shutil.rmtree(dir_path)
# sync local collection with remote collection
test_session.assert_icommand(
"irsync -r i:{local_home_collection}/{dir_name} i:{remote_home_collection}/{dir_name}".format(**parameters)
)
# collection should be there
test_session.assert_icommand(
"ils -L {remote_home_collection}/{dir_name}".format(**parameters), "STDOUT_SINGLELINE", dir_name
)
# files should be there
rods_files = set(
lib.ils_output_to_entries(
test_session.run_icommand(["ils", "{remote_home_collection}/{dir_name}".format(**parameters)])[1]
)
)
self.assertTrue(set(local_files) == rods_files)
# get collection back
test_session.assert_icommand("iget -r {remote_home_collection}/{dir_name} {dir_path}".format(**parameters))
# compare list of files
received_files = os.listdir(dir_path)
self.assertTrue(set(local_files) == set(received_files))
# cleanup
test_session.assert_icommand("irm -rf {local_home_collection}/{dir_name}".format(**parameters))
test_session.assert_icommand("irm -rf {remote_home_collection}/{dir_name}".format(**parameters))
shutil.rmtree(dir_path)
def test_ireg_dir_exclude_from(self):
# test settings
depth = 10
files_per_level = 10
file_size = 100
# make a local test dir under /tmp/
test_dir_name = 'test_ireg_dir_exclude_from'
local_dir = os.path.join(self.testing_tmp_dir, test_dir_name)
local_dirs = lib.make_deep_local_tmp_dir(local_dir, depth,
files_per_level, file_size)
# arbitrary list of files to exclude
excluded = set(['junk0001', 'junk0002', 'junk0003'])
# make exclusion file
exclude_file_path = os.path.join(self.testing_tmp_dir, 'exclude.txt')
with open(exclude_file_path, 'w') as exclude_file:
for filename in excluded:
print >> exclude_file, filename
# register local dir
target_collection = self.admin.home_collection + '/' + test_dir_name
self.admin.assert_icommand(
"ireg --exclude-from {exclude_file_path} -C {local_dir} {target_collection}"
.format(**locals()), "EMPTY")
# compare files at each level
for dir, files in local_dirs.iteritems():
subcollection = dir.replace(local_dir, target_collection, 1)
# run ils on subcollection
self.admin.assert_icommand(['ils', subcollection],
'STDOUT_SINGLELINE')
ils_out = lib.ils_output_to_entries(
self.admin.run_icommand(['ils', subcollection])[1])
# compare irods objects with local files, minus the excluded ones
local_files = set(files)
rods_files = set(lib.files_in_ils_output(ils_out))
self.assertSetEqual(
rods_files,
local_files - excluded,
msg="Files missing:\n" + str(local_files - rods_files) +
"\n\n" + "Extra files:\n" + str(rods_files - local_files))
# unregister collection
self.admin.assert_icommand(
"irm -rfU {target_collection}".format(**locals()))
# remove local test dir and exclusion file
os.remove(exclude_file_path)
shutil.rmtree(local_dir)
def iput_r_large_collection(self, session, base_name, file_count, file_size):
local_dir = os.path.join(self.testing_tmp_dir, base_name)
local_files = lib.make_large_local_tmp_dir(local_dir, file_count, file_size)
session.assert_icommand(['iput', '-r', local_dir])
rods_files = set(lib.ils_output_to_entries(session.run_icommand(['ils', base_name])[1]))
self.assertTrue(set(local_files) == rods_files,
msg="Files missing:\n" + str(set(local_files) - rods_files) + "\n\n" +
"Extra files:\n" + str(rods_files - set(local_files)))
vault_files = set(os.listdir(os.path.join(lib.get_vault_session_path(session), base_name)))
self.assertTrue(set(local_files) == vault_files,
msg="Files missing from vault:\n" + str(set(local_files) - vault_files) + "\n\n" +
"Extra files in vault:\n" + str(vault_files - set(local_files)))
return (local_dir, local_files)
def test_msirmcoll(self):
# pick session(s) for the test
test_session = self.user_sessions[0]
# make test dir
dir_name = "msiRmColl_test_dir"
dir_path = os.path.join(self.local_test_dir_path, dir_name)
local_files = lib.make_large_local_tmp_dir(
dir_path, self.config["test_file_count"], self.config["test_file_size"]
)
# test specific parameters
parameters = self.config.copy()
parameters["dir_path"] = dir_path
parameters["dir_name"] = dir_name
parameters["user_name"] = test_session.username
parameters["remote_home_collection"] = "/{remote_zone}/home/{user_name}#{local_zone}".format(**parameters)
# put dir in remote collection
test_session.assert_icommand("iput -r {dir_path} {remote_home_collection}/".format(**parameters))
# new collection should be there
test_session.assert_icommand(
"ils -L {remote_home_collection}/{dir_name}".format(**parameters), "STDOUT_SINGLELINE", dir_name
)
# files should be there
rods_files = set(
lib.ils_output_to_entries(
test_session.run_icommand(["ils", "{remote_home_collection}/{dir_name}".format(**parameters)])[1]
)
)
self.assertTrue(set(local_files) == rods_files)
# prepare irule sequence
# the rule is simple enough not to need a rule file
irule_str = '''irule "msiRmColl(*coll, 'forceFlag=', *status); writeLine('stdout', *status)" "*coll={remote_home_collection}/{dir_name}" "ruleExecOut"'''.format(
**parameters
)
# invoke msiRmColl() and checks that it returns 0
test_session.assert_icommand(irule_str, "STDOUT", "^0$", use_regex=True)
# collection should be gone
test_session.assert_icommand(
"ils -L {remote_home_collection}/{dir_name}".format(**parameters), "STDERR_SINGLELINE", "does not exist"
)
# cleanup
shutil.rmtree(dir_path)
def test_get_null_perms__2833(self):
base_name = 'test_dir_for_perms'
local_dir = os.path.join(self.testing_tmp_dir, base_name)
local_files = lib.make_large_local_tmp_dir(local_dir, 30, 10)
self.admin.assert_icommand(['iput', '-r', local_dir])
rods_files = lib.ils_output_to_entries(self.admin.run_icommand(['ils', base_name])[1])
test_dir = 'test_get_null_perms__2833_dir'
self.admin.assert_icommand(['ichmod','-r','null',self.admin.username,base_name])
self.admin.assert_icommand(['ichmod','read',self.admin.username,base_name+'/'+rods_files[-1]])
self.admin.assert_icommand(['iget','-r',base_name,test_dir],'STDERR_SINGLELINE','CAT_NO_ACCESS_PERMISSION')
assert os.path.isfile(os.path.join(test_dir,'junk0029'))
self.admin.assert_icommand(['ichmod','-r','own',self.admin.username,base_name])
lib.run_command(['rm','-rf',test_dir])
def test_irsync_r_coll_to_coll(self):
# make test dir
dir_name = 'irsync_test_dir'
dir_path = os.path.abspath(dir_name)
local_files = lib.make_large_local_tmp_dir(
dir_path, self.config['test_file_count'], self.config['test_file_size'])
kwargs = {'dir_name': dir_name,
'remote_collection': self.config['remote_home_coll'],
'local_collection': self.config['local_home_coll']}
# put dir in local collection
self.admin_sessions[0].assert_icommand(
"iput -r {dir_name} {local_collection}/".format(**kwargs))
# remove local test dir
shutil.rmtree(dir_path)
# sync local collection with remote collection
self.admin_sessions[0].assert_icommand(
"irsync -r i:{local_collection}/{dir_name} i:{remote_collection}/{dir_name}".format(**kwargs))
# collection should be there
self.admin_sessions[0].assert_icommand(
"ils -L {remote_collection}/{dir_name}".format(**kwargs), 'STDOUT_SINGLELINE', dir_name)
# files should be there
rods_files = set(lib.ils_output_to_entries(
self.admin_sessions[0].run_icommand(['ils', "{remote_collection}/{dir_name}".format(**kwargs)])[1]))
self.assertTrue(set(local_files) == rods_files)
# get collection back
self.admin_sessions[0].assert_icommand(
"iget -r {remote_collection}/{dir_name}".format(**kwargs))
# compare list of files
received_files = os.listdir(dir_path)
self.assertTrue(set(local_files) == set(received_files))
# cleanup
self.admin_sessions[0].assert_icommand(
"irm -rf {local_collection}/{dir_name}".format(**kwargs))
self.admin_sessions[0].assert_icommand(
"irm -rf {remote_collection}/{dir_name}".format(**kwargs))
shutil.rmtree(dir_path)
def test_ireg_dir_exclude_from(self):
# test settings
depth = 10
files_per_level = 10
file_size = 100
# make a local test dir under /tmp/
test_dir_name = 'test_ireg_dir_exclude_from'
local_dir = os.path.join(self.testing_tmp_dir, test_dir_name)
local_dirs = lib.make_deep_local_tmp_dir(local_dir, depth, files_per_level, file_size)
# arbitrary list of files to exclude
excluded = set(['junk0001', 'junk0002', 'junk0003'])
# make exclusion file
exclude_file_path = os.path.join(self.testing_tmp_dir, 'exclude.txt')
with open(exclude_file_path, 'w') as exclude_file:
for filename in excluded:
print >>exclude_file, filename
# register local dir
target_collection = self.admin.home_collection + '/' + test_dir_name
self.admin.assert_icommand("ireg --exclude-from {exclude_file_path} -C {local_dir} {target_collection}".format(**locals()), "EMPTY")
# compare files at each level
for dir, files in local_dirs.iteritems():
subcollection = dir.replace(local_dir, target_collection, 1)
# run ils on subcollection
self.admin.assert_icommand(['ils', subcollection], 'STDOUT_SINGLELINE')
ils_out = lib.ils_output_to_entries(self.admin.run_icommand(['ils', subcollection])[1])
# compare irods objects with local files, minus the excluded ones
local_files = set(files)
rods_files = set(lib.files_in_ils_output(ils_out))
self.assertSetEqual(rods_files, local_files - excluded,
msg="Files missing:\n" + str(local_files - rods_files) + "\n\n" +
"Extra files:\n" + str(rods_files - local_files))
# unregister collection
self.admin.assert_icommand("irm -rfU {target_collection}".format(**locals()))
# remove local test dir and exclusion file
os.remove(exclude_file_path)
shutil.rmtree(local_dir)
def test_irsync_r_dir_to_coll(self):
base_name = "test_irsync_r_dir_to_coll"
local_dir = os.path.join(self.testing_tmp_dir, base_name)
file_names = set(lib.make_large_local_tmp_dir(local_dir, file_count=1000, file_size=100))
self.user0.assert_icommand("irsync -r " + local_dir + " i:" + base_name, "EMPTY")
self.user0.assert_icommand("ils", 'STDOUT_SINGLELINE', base_name)
rods_files = set(lib.ils_output_to_entries(self.user0.run_icommand(['ils', base_name])[1]))
self.assertTrue(file_names == rods_files,
msg="Files missing:\n" + str(file_names - rods_files) + "\n\n" +
"Extra files:\n" + str(rods_files - file_names))
vault_files_post_irsync = set(os.listdir(os.path.join(lib.get_vault_session_path(self.user0),
base_name)))
self.assertTrue(file_names == vault_files_post_irsync,
msg="Files missing from vault:\n" + str(file_names - vault_files_post_irsync) + "\n\n" +
"Extra files in vault:\n" + str(vault_files_post_irsync - file_names))
def test_irm_rf(self):
# pick session(s) for the test
test_session = self.user_sessions[0]
# make test dir
dir_name = "irm_test_dir"
dir_path = os.path.join(self.local_test_dir_path, dir_name)
local_files = lib.make_large_local_tmp_dir(
dir_path, self.config["test_file_count"], self.config["test_file_size"]
)
# test specific parameters
parameters = self.config.copy()
parameters["dir_path"] = dir_path
parameters["dir_name"] = dir_name
parameters["user_name"] = test_session.username
parameters["remote_home_collection"] = "/{remote_zone}/home/{user_name}#{local_zone}".format(**parameters)
# put dir in remote collection
test_session.assert_icommand("iput -r {dir_path} {remote_home_collection}/".format(**parameters))
# new collection should be there
test_session.assert_icommand(
"ils -L {remote_home_collection}/{dir_name}".format(**parameters), "STDOUT_SINGLELINE", dir_name
)
# files should be there
rods_files = set(
lib.ils_output_to_entries(
test_session.run_icommand(["ils", "{remote_home_collection}/{dir_name}".format(**parameters)])[1]
)
)
self.assertTrue(set(local_files) == rods_files)
# remove remote coll
test_session.assert_icommand("irm -rf {remote_home_collection}/{dir_name}".format(**parameters))
# coll should be gone
test_session.assert_icommand(
"ils -L {remote_home_collection}/{dir_name}".format(**parameters), "STDERR_SINGLELINE", "does not exist"
)
# cleanup
shutil.rmtree(dir_path)
def test_irsync_r_nested_dir_to_coll(self):
# test settings
depth = 10
files_per_level = 100
file_size = 100
# make local nested dirs
base_name = "test_irsync_r_nested_dir_to_coll"
local_dir = os.path.join(self.testing_tmp_dir, base_name)
local_dirs = lib.make_deep_local_tmp_dir(
local_dir, depth, files_per_level, file_size)
# set client env
env = os.environ.copy()
env['X509_USER_PROXY'] = self.config['client_user_proxy']
# sync dir to coll
self.gsi_user.assert_icommand(
"irsync -r {local_dir} i:{base_name}".format(**locals()), "EMPTY", env=env)
# compare files at each level
for directory, files in local_dirs.iteritems():
partial_path = directory.replace(self.testing_tmp_dir + '/', '', 1)
# run ils on subcollection
self.gsi_user.assert_icommand(
['ils', partial_path], 'STDOUT_SINGLELINE', env=env)
ils_out = lib.ils_output_to_entries(
self.gsi_user.run_icommand(['ils', partial_path], env=env)[1])
# compare local files with irods objects
local_files = set(files)
rods_files = set(lib.files_in_ils_output(ils_out))
self.assertTrue(local_files == rods_files,
msg="Files missing:\n" + str(local_files - rods_files) + "\n\n" +
"Extra files:\n" + str(rods_files - local_files))
# cleanup
self.gsi_user.assert_icommand(
"irm -rf {base_name}".format(**locals()), "EMPTY", env=env)
def iput_r_large_collection(self, session, base_name, file_count,
file_size):
local_dir = os.path.join(self.testing_tmp_dir, base_name)
local_files = lib.make_large_local_tmp_dir(local_dir, file_count,
file_size)
session.assert_icommand(['iput', '-r', local_dir])
rods_files = set(
lib.ils_output_to_entries(
session.run_icommand(['ils', base_name])[1]))
self.assertTrue(set(local_files) == rods_files,
msg="Files missing:\n" +
str(set(local_files) - rods_files) + "\n\n" +
"Extra files:\n" + str(rods_files - set(local_files)))
vault_files = set(
os.listdir(
os.path.join(lib.get_vault_session_path(session), base_name)))
self.assertTrue(set(local_files) == vault_files,
msg="Files missing from vault:\n" +
str(set(local_files) - vault_files) + "\n\n" +
"Extra files in vault:\n" +
str(vault_files - set(local_files)))
return (local_dir, local_files)
def test_imv_r(self):
base_name_source = "test_imv_r_dir_source"
file_names = set(
self.iput_r_large_collection(self.user0,
base_name_source,
file_count=1000,
file_size=100)[1])
base_name_target = "test_imv_r_dir_target"
self.user0.assert_icommand(
"imv " + base_name_source + " " + base_name_target, "EMPTY")
self.user0.assert_icommand("ils " + base_name_source,
'STDERR_SINGLELINE', "does not exist")
self.user0.assert_icommand("ils", 'STDOUT_SINGLELINE',
base_name_target)
rods_files_post_imv = set(
lib.ils_output_to_entries(
self.user0.run_icommand(['ils', base_name_target])[1]))
self.assertTrue(
file_names == rods_files_post_imv,
msg="Files missing:\n" + str(file_names - rods_files_post_imv) +
"\n\n" + "Extra files:\n" + str(rods_files_post_imv - file_names))
vault_files_post_irm_source = set(
os.listdir(
os.path.join(lib.get_vault_session_path(self.user0),
base_name_source)))
self.assertTrue(len(vault_files_post_irm_source) == 0)
vault_files_post_irm_target = set(
os.listdir(
os.path.join(lib.get_vault_session_path(self.user0),
base_name_target)))
self.assertTrue(file_names == vault_files_post_irm_target,
msg="Files missing from vault:\n" +
str(file_names - vault_files_post_irm_target) +
"\n\n" + "Extra files in vault:\n" +
str(vault_files_post_irm_target - file_names))
def test_irsync_r_coll_to_dir(self):
base_name_source = "test_irsync_r_coll_to_dir_source"
file_names = set(self.iput_r_large_collection(
self.user0, base_name_source, file_count=1000, file_size=100)[1])
local_dir = os.path.join(self.testing_tmp_dir, "test_irsync_r_coll_to_dir_target")
self.user0.assert_icommand("irsync -r i:" + base_name_source + " " + local_dir, "EMPTY")
self.user0.assert_icommand("ils", 'STDOUT', base_name_source)
rods_files_source = set(lib.ils_output_to_entries(self.user0.run_icommand(['ils', base_name_source])[1]))
self.assertTrue(file_names == rods_files_source,
msg="Files missing:\n" + str(file_names - rods_files_source) + "\n\n" +
"Extra files:\n" + str(rods_files_source - file_names))
local_files = set(os.listdir(local_dir))
self.assertTrue(file_names == local_files,
msg="Files missing from local dir:\n" + str(file_names - local_files) + "\n\n" +
"Extra files in local dir:\n" + str(local_files - file_names))
vault_files_post_irsync_source = set(os.listdir(os.path.join(lib.get_vault_session_path(self.user0),
base_name_source)))
self.assertTrue(file_names == vault_files_post_irsync_source,
msg="Files missing from vault:\n" + str(file_names - vault_files_post_irsync_source) + "\n\n" +
"Extra files in vault:\n" + str(vault_files_post_irsync_source - file_names))
def test_imv_r(self):
base_name_source = "test_imv_r_dir_source"
file_names = set(self.iput_r_large_collection(
self.user0, base_name_source, file_count=1000, file_size=100)[1])
base_name_target = "test_imv_r_dir_target"
self.user0.assert_icommand("imv " + base_name_source + " " + base_name_target, "EMPTY")
self.user0.assert_icommand("ils " + base_name_source, 'STDERR_SINGLELINE', "does not exist")
self.user0.assert_icommand("ils", 'STDOUT_SINGLELINE', base_name_target)
rods_files_post_imv = set(lib.ils_output_to_entries(self.user0.run_icommand(['ils', base_name_target])[1]))
self.assertTrue(file_names == rods_files_post_imv,
msg="Files missing:\n" + str(file_names - rods_files_post_imv) + "\n\n" +
"Extra files:\n" + str(rods_files_post_imv - file_names))
vault_files_post_irm_source = set(os.listdir(os.path.join(lib.get_vault_session_path(self.user0),
base_name_source)))
self.assertTrue(len(vault_files_post_irm_source) == 0)
vault_files_post_irm_target = set(os.listdir(os.path.join(lib.get_vault_session_path(self.user0),
base_name_target)))
self.assertTrue(file_names == vault_files_post_irm_target,
msg="Files missing from vault:\n" + str(file_names - vault_files_post_irm_target) + "\n\n" +
"Extra files in vault:\n" + str(vault_files_post_irm_target - file_names))