def test_duplicate_count(self):
from libcellml import Annotator, Parser
annotator = Annotator()
parser = Parser()
model = parser.parseModel(file_contents("annotator/lots_of_duplicate_ids.cellml"))
annotator.setModel(model)
self.assertEqual(8, annotator.itemCount("duplicateId1"))
self.assertEqual(7, annotator.itemCount("duplicateId3"))
print('The id strings used in the model are:')
ids = annotator.ids()
for id in ids:
print(' - "{}"'.format(id))
# end 4.a
# The hex strings printed are those which have been automatically generated by the assignId
# function we can also see the 'marco' and 'polo' ids as expected.
# 4.b
# Use the duplicateIds function to return a vector of those ids which have been duplicated in
# the model, and print them to the terminal.
print('Duplicated id strings are:')
duplicated_ids = annotator.duplicateIds()
for id in duplicated_ids:
print(' - "{}" occurs {} times'.format(id, annotator.itemCount(id)))
# end 4
print('----------------------------------------------------------')
print(' STEP 5: See who else is lurking around the corner ')
print('----------------------------------------------------------')
# The final step is to make sure that imported items can have their annotations
# tracked back to their sources too.
# 5.a
# Retrieve an item with id of 'whoAmIAndWhereDidIComeFrom' and print its item type
# to the terminal.
who_am_i = annotator.item('whoAmIAndWhereDidIComeFrom')
print('The type of item with ID "whoAmIAndWhereDidIComeFrom" is {}'.format(
len(duplicatedIds)))
for i in duplicatedIds:
print(' - ' + i)
print()
# Retrieve all items with the given id string. This returns a std.vector
# of AnyItems which will need to be cast into libcellml items before they
# can be used. Note that duplicated ids are not valid CellML, and need
# to be fixed before the model can be used.
allItemsWithDuplicateId1 = annotator.items('duplicateId1')
# A new id string which is automatically generated and unique can be
# assigned to these items.
print(
'Before assigning automatic ids there are {} items with an id of "duplicateId1".'
.format(annotator.itemCount('duplicateId1')))
for item in allItemsWithDuplicateId1:
annotator.assignId(item)
# Now there are no more items with the duplicated id 'duplicateId1'
# remaining in the model.
allItemsWithDuplicateId1 = annotator.items('duplicateId1')
print(
'After assigning automatic ids there are {} items with an id of "duplicateId1".'
.format(annotator.itemCount('duplicateId1')))
# It's straightforward to use a double loop to automatically assign new and unique ids to
# any duplicated ids in the model.
duplicatedIds = annotator.duplicateIds()
for i in duplicatedIds:
itemsWithThisId = annotator.items(i)
