def create_sbml(self, model: libsbml.Model):
obj = model.createFunctionDefinition(
) # type: libsbml.FunctionDefinition
self.set_fields(obj, model)
self.create_port(model)
return obj
def _create_function(model: sbml.Model,
function_id: str,
arguments: str,
formula: str):
"""
Creates a functionDefinition and adds it to the given SBML model.
Arguments:
model: SBML model to which the function will be added.
function_id: the function id/name
arguments: the arguments of the function (species AND parameters)
formula: the formula of the function
Returns:
Raises:
"""
f = model.createFunctionDefinition()
f.setId(function_id)
math = sbml.parseL3Formula('lambda(' + arguments + ', ' + formula + ')')
f.setMath(math)