pkg_resources.resource_filename("libsbml_draw",
"model/data/" + model_file_name))
sl = SBMLlayout(str(model_file))
sl._describeModel()
sl.drawNetwork()
sl.setCompartmentEdgeColor("vol1", "#0000ff")
sl.setCompartmentFillColor("vol1", "#ff000010")
sl.setCompartmentLineWidth("vol1", 5)
assert sl.getCompartmentEdgeColor("vol1") == "#0000ffff"
assert sl.getCompartmentFillColor("vol1") == "#ff000010"
assert sl.getCompartmentLineWidth("vol1") == 5
sl.drawNetwork("simple_render_local.png")
sl.writeSBMLFile("simple_render_local_out.xml")
slr = SBMLlayout("simple_render_local_out.xml")
slr.drawNetwork()
model_file_name = "simple-L2-render-global.xml"
#model_file_name = "simple-L2-render-global-L3V1.xml"
model_file = Path(
pkg_resources.resource_filename("libsbml_draw",
"model/data/" + model_file_name))
for node in sll._SBMLlayout__network.nodes.values():
print("Node shape points: ", node.shape, len(node.polygon_points),
len(node.polygon_codes))
for point in node.polygon_points:
print("point: ", point)
for code in node.polygon_codes:
print("code: ", code)
sll.drawNetwork()
sll.writeSBMLFile("simple_local_out.xml")
print(sll.getCompartmentEdgeColor("vol1"))
print(sll.getCompartmentFillColor("vol1"))
print(sll.getCompartmentLineWidth("vol1"))
# check libsbml API
doc = libsbml.readSBMLFromFile(str(model_file))
model = doc.getModel()
numCompartments = model.getNumCompartments()
print("numCompartments: ", numCompartments)
for index in range(numCompartments):
compartment = model.getCompartment(index)
print("id, name: ", compartment.getId(), ", ",
compartment.getElementName())