def connectDb(dbfile):
version = db.testOpsimVersion(dbfile)
if version == "Unknown":
opsdb = db.Database(dbfile)
colmap = batches.ColMapDict('barebones')
elif version == "V3":
opsdb = db.OpsimDatabaseV3(dbfile)
colmap = batches.ColMapDict('OpsimV3')
elif version == "V4":
opsdb = db.OpsimDatabaseV4(dbfile)
colmap = batches.ColMapDict('OpsimV4')
return opsdb, colmap
def testOut(self):
"""
Check that the metric bundle can generate the expected output
"""
nside = 8
slicer = slicers.HealpixSlicer(nside=nside)
metric = metrics.MeanMetric(col='airmass')
sql = 'filter="r"'
stacker1 = stackers.RandomDitherFieldPerVisitStacker()
stacker2 = stackers.GalacticStacker()
map1 = maps.GalCoordsMap()
map2 = maps.StellarDensityMap()
metricB = metricBundles.MetricBundle(metric,
slicer,
sql,
stackerList=[stacker1, stacker2],
mapsList=[map1, map2])
database = os.path.join(getPackageDir('sims_data'), 'OpSimData',
'astro-lsst-01_2014.db')
opsdb = db.OpsimDatabaseV4(database=database)
resultsDb = db.ResultsDb(outDir=self.outDir)
bgroup = metricBundles.MetricBundleGroup({0: metricB},
opsdb,
outDir=self.outDir,
resultsDb=resultsDb)
bgroup.runAll()
bgroup.plotAll()
bgroup.writeAll()
opsdb.close()
outThumbs = glob.glob(os.path.join(self.outDir, 'thumb*'))
outNpz = glob.glob(os.path.join(self.outDir, '*.npz'))
outPdf = glob.glob(os.path.join(self.outDir, '*.pdf'))
# By default, make 3 plots for healpix
assert (len(outThumbs) == 3)
assert (len(outPdf) == 3)
assert (len(outNpz) == 1)
def makeBundleList(dbFile, runName=None, nside=64, benchmark='design',
lonCol='fieldRA', latCol='fieldDec', seeingCol='seeingFwhmGeom'):
"""
make a list of metricBundle objects to look at the scientific performance
of an opsim run.
"""
# List to hold everything we're going to make
bundleList = []
# List to hold metrics that shouldn't be saved
noSaveBundleList = []
# Connect to the databse
opsimdb = db.OpsimDatabaseV4(dbFile)
if runName is None:
runName = os.path.basename(dbFile).replace('_sqlite.db', '')
# Fetch the proposal ID values from the database
propids, propTags = opsimdb.fetchPropInfo()
# Fetch the telescope location from config
lat, lon, height = opsimdb.fetchLatLonHeight()
# Add metadata regarding dithering/non-dithered.
commonname = ''.join([a for a in lonCol if a in latCol])
if commonname == 'field':
slicermetadata = ' (non-dithered)'
else:
slicermetadata = ' (%s)' % (commonname)
# Construct a WFD SQL where clause so multiple propIDs can query by WFD:
wfdWhere = opsimdb.createSQLWhere('WFD', propTags)
print('#FYI: WFD "where" clause: %s' % (wfdWhere))
ddWhere = opsimdb.createSQLWhere('DD', propTags)
print('#FYI: DD "where" clause: %s' % (ddWhere))
# Set up benchmark values, scaled to length of opsim run.
runLength = opsimdb.fetchRunLength()
if benchmark == 'requested':
# Fetch design values for seeing/skybrightness/single visit depth.
benchmarkVals = utils.scaleBenchmarks(runLength, benchmark='design')
# Update nvisits with requested visits from config files.
benchmarkVals['nvisits'] = opsimdb.fetchRequestedNvisits(propId=propTags['WFD'])
# Calculate expected coadded depth.
benchmarkVals['coaddedDepth'] = utils.calcCoaddedDepth(benchmarkVals['nvisits'],
benchmarkVals['singleVisitDepth'])
elif (benchmark == 'stretch') or (benchmark == 'design'):
# Calculate benchmarks for stretch or design.
benchmarkVals = utils.scaleBenchmarks(runLength, benchmark=benchmark)
benchmarkVals['coaddedDepth'] = utils.calcCoaddedDepth(benchmarkVals['nvisits'],
benchmarkVals['singleVisitDepth'])
else:
raise ValueError('Could not recognize benchmark value %s, use design, stretch or requested.'
% (benchmark))
# Check that nvisits is not set to zero (for very short run length).
for f in benchmarkVals['nvisits']:
if benchmarkVals['nvisits'][f] == 0:
print('Updating benchmark nvisits value in %s to be nonzero' % (f))
benchmarkVals['nvisits'][f] = 1
# Set values for min/max range of nvisits for All/WFD and DD plots. These are somewhat arbitrary.
nvisitsRange = {}
nvisitsRange['all'] = {'u': [20, 80], 'g': [50, 150], 'r': [100, 250],
'i': [100, 250], 'z': [100, 300], 'y': [100, 300]}
nvisitsRange['DD'] = {'u': [6000, 10000], 'g': [2500, 5000], 'r': [5000, 8000],
'i': [5000, 8000], 'z': [7000, 10000], 'y': [5000, 8000]}
# Scale these ranges for the runLength.
scale = runLength / 10.0
for prop in nvisitsRange:
for f in nvisitsRange[prop]:
for i in [0, 1]:
nvisitsRange[prop][f][i] = int(np.floor(nvisitsRange[prop][f][i] * scale))
# Filter list, and map of colors (for plots) to filters.
filters = ['u', 'g', 'r', 'i', 'z', 'y']
colors = {'u': 'cyan', 'g': 'g', 'r': 'y', 'i': 'r', 'z': 'm', 'y': 'k'}
filtorder = {'u': 1, 'g': 2, 'r': 3, 'i': 4, 'z': 5, 'y': 6}
# Easy way to run through all fi
# Set up a list of common summary stats
commonSummary = [metrics.MeanMetric(), metrics.RobustRmsMetric(), metrics.MedianMetric(),
metrics.PercentileMetric(metricName='25th%ile', percentile=25),
metrics.PercentileMetric(metricName='75th%ile', percentile=75),
metrics.MinMetric(), metrics.MaxMetric()]
allStats = commonSummary
# Set up some 'group' labels
reqgroup = 'A: Required SRD metrics'
depthgroup = 'B: Depth per filter'
uniformitygroup = 'C: Uniformity'
airmassgroup = 'D: Airmass distribution'
seeinggroup = 'E: Seeing distribution'
transgroup = 'F: Transients'
sngroup = 'G: SN Ia'
altAzGroup = 'H: Alt Az'
rangeGroup = 'I: Range of Dates'
intergroup = 'J: Inter-Night'
phaseGroup = 'K: Max Phase Gap'
NEOGroup = 'L: NEO Detection'
# Set up an object to track the metricBundles that we want to combine into merged plots.
mergedHistDict = {}
# Set the histogram merge function.
mergeFunc = plots.HealpixHistogram()
keys = ['NVisits', 'coaddm5', 'NormEffTime', 'Minseeing', 'seeingAboveLimit', 'minAirmass',
'fracAboveAirmass']
for key in keys:
mergedHistDict[key] = plots.PlotBundle(plotFunc=mergeFunc)
##
# Calculate the fO metrics for all proposals and WFD only.
order = 0
for prop in ('All prop', 'WFD only'):
if prop == 'All prop':
metadata = 'All Visits' + slicermetadata
sqlconstraint = ''
if prop == 'WFD only':
metadata = 'WFD only' + slicermetadata
sqlconstraint = '%s' % (wfdWhere)
# Configure the count metric which is what is used for f0 slicer.
m1 = metrics.CountMetric(col='observationStartMJD', metricName='fO')
plotDict = {'xlabel': 'Number of Visits', 'Asky': benchmarkVals['Area'],
'Nvisit': benchmarkVals['nvisitsTotal'], 'xMin': 0, 'xMax': 1500}
summaryMetrics = [metrics.fOArea(nside=nside, norm=False, metricName='fOArea: Nvisits (#)',
Asky=benchmarkVals['Area'], Nvisit=benchmarkVals['nvisitsTotal']),
metrics.fOArea(nside=nside, norm=True, metricName='fOArea: Nvisits/benchmark',
Asky=benchmarkVals['Area'], Nvisit=benchmarkVals['nvisitsTotal']),
metrics.fONv(nside=nside, norm=False, metricName='fONv: Area (sqdeg)',
Asky=benchmarkVals['Area'], Nvisit=benchmarkVals['nvisitsTotal']),
metrics.fONv(nside=nside, norm=True, metricName='fONv: Area/benchmark',
Asky=benchmarkVals['Area'], Nvisit=benchmarkVals['nvisitsTotal'])]
caption = 'The FO metric evaluates the overall efficiency of observing. '
caption += ('fOArea: Nvisits = %.1f sq degrees receive at least this many visits out of %d. '
% (benchmarkVals['Area'], benchmarkVals['nvisitsTotal']))
caption += ('fONv: Area = this many square degrees out of %.1f receive at least %d visits.'
% (benchmarkVals['Area'], benchmarkVals['nvisitsTotal']))
displayDict = {'group': reqgroup, 'subgroup': 'F0', 'displayOrder': order, 'caption': caption}
order += 1
slicer = slicers.HealpixSlicer(nside=nside, lonCol=lonCol, latCol=latCol)
bundle = metricBundles.MetricBundle(m1, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryMetrics,
plotFuncs=[plots.FOPlot()],
runName=runName, metadata=metadata)
bundleList.append(bundle)
###
# Calculate the Rapid Revisit Metrics.
order = 0
metadata = 'All Visits' + slicermetadata
sqlconstraint = ''
dTmin = 40.0 # seconds
dTmax = 30.0*60. # seconds
minNvisit = 100
pixArea = float(hp.nside2pixarea(nside, degrees=True))
scale = pixArea * hp.nside2npix(nside)
cutoff1 = 0.15
extraStats1 = [metrics.FracBelowMetric(cutoff=cutoff1, scale=scale, metricName='Area (sq deg)')]
extraStats1.extend(commonSummary)
slicer = slicers.HealpixSlicer(nside=nside, lonCol=lonCol, latCol=latCol)
m1 = metrics.RapidRevisitMetric(metricName='RapidRevisitUniformity',
dTmin=dTmin / 60.0 / 60.0 / 24.0, dTmax=dTmax / 60.0 / 60.0 / 24.0,
minNvisits=minNvisit)
plotDict = {'xMin': 0, 'xMax': 1}
summaryStats = extraStats1
caption = 'Deviation from uniformity for short revisit timescales, between %s and %s seconds, ' % (
dTmin, dTmax)
caption += 'for pointings with at least %d visits in this time range. ' % (minNvisit)
caption += 'Summary statistic "Area" below indicates the area on the sky which has a '
caption += 'deviation from uniformity of < %.2f.' % (cutoff1)
displayDict = {'group': reqgroup, 'subgroup': 'Rapid Revisit', 'displayOrder': order,
'caption': caption}
bundle = metricBundles.MetricBundle(m1, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
dTmax = dTmax/60.0 # need time in minutes for Nrevisits metric
m2 = metrics.NRevisitsMetric(dT=dTmax)
plotDict = {'xMin': 0.1, 'xMax': 2000, 'logScale': True}
cutoff2 = 800
extraStats2 = [metrics.FracAboveMetric(cutoff=cutoff2, scale=scale, metricName='Area (sq deg)')]
extraStats2.extend(commonSummary)
caption = 'Number of consecutive visits with return times faster than %.1f minutes, ' % (dTmax)
caption += 'in any filter, all proposals. '
caption += 'Summary statistic "Area" below indicates the area on the sky which has more than '
caption += '%d revisits within this time window.' % (cutoff2)
summaryStats = extraStats2
displayDict = {'group': reqgroup, 'subgroup': 'Rapid Revisit', 'displayOrder': order,
'caption': caption}
bundle = metricBundles.MetricBundle(m2, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
m3 = metrics.NRevisitsMetric(dT=dTmax, normed=True)
plotDict = {'xMin': 0, 'xMax': 1, 'cbarFormat': '%.1f'}
cutoff3 = 0.6
extraStats3 = [metrics.FracAboveMetric(cutoff=cutoff3, scale=scale, metricName='Area (sq deg)')]
extraStats3.extend(commonSummary)
summaryStats = extraStats3
caption = 'Fraction of total visits where consecutive visits have return times faster '
caption += 'than %.1f minutes, in any filter, all proposals. ' % (dTmax)
caption += 'Summary statistic "Area" below indicates the area on the sky which has more '
caption += 'than %d revisits within this time window.' % (cutoff3)
displayDict = {'group': reqgroup, 'subgroup': 'Rapid Revisit', 'displayOrder': order,
'caption': caption}
bundle = metricBundles.MetricBundle(m3, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
# And add a histogram of the time between quick revisits.
binMin = 0
binMax = 120.
binsize = 3.
bins_metric = np.arange(binMin / 60.0 / 24.0, (binMax + binsize) / 60. / 24., binsize / 60. / 24.)
bins_plot = bins_metric * 24.0 * 60.0
m1 = metrics.TgapsMetric(bins=bins_metric, metricName='dT visits')
plotDict = {'bins': bins_plot, 'xlabel': 'dT (minutes)'}
caption = ('Histogram of the time between consecutive revisits (<%.1f minutes), over entire sky.'
% (binMax))
displayDict = {'group': reqgroup, 'subgroup': 'Rapid Revisit', 'order': order,
'caption': caption}
slicer = slicers.HealpixSlicer(nside=nside, lonCol=lonCol, latCol=latCol)
plotFunc = plots.SummaryHistogram()
bundle = metricBundles.MetricBundle(m1, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName,
metadata=metadata, plotFuncs=[plotFunc])
bundleList.append(bundle)
order += 1
##
# Trigonometric parallax and proper motion @ r=20 and r=24
slicer = slicers.HealpixSlicer(nside=nside, lonCol=lonCol, latCol=latCol)
sqlconstraint = ''
order = 0
metric = metrics.ParallaxMetric(metricName='Parallax 20', rmag=20, seeingCol=seeingCol)
summaryStats = allStats
plotDict = {'cbarFormat': '%.1f', 'xMin': 0, 'xMax': 3}
displayDict = {'group': reqgroup, 'subgroup': 'Parallax', 'order': order,
'caption': 'Parallax precision at r=20. (without refraction).'}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
metric = metrics.ParallaxMetric(metricName='Parallax 24', rmag=24, seeingCol=seeingCol)
plotDict = {'cbarFormat': '%.1f', 'xMin': 0, 'xMax': 10}
displayDict = {'group': reqgroup, 'subgroup': 'Parallax', 'order': order,
'caption': 'Parallax precision at r=24. (without refraction).'}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
metric = metrics.ParallaxMetric(metricName='Parallax Normed', rmag=24, normalize=True,
seeingCol=seeingCol)
plotDict = {'xMin': 0.5, 'xMax': 1.0}
displayDict = {'group': reqgroup, 'subgroup': 'Parallax', 'order': order,
'caption':
'Normalized parallax (normalized to optimum observation cadence, 1=optimal).'}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
metric = metrics.ParallaxCoverageMetric(metricName='Parallax Coverage 20', rmag=20, seeingCol=seeingCol)
plotDict = {}
caption = "Parallax factor coverage for an r=20 star (0 is bad, 0.5-1 is good). "
caption += "One expects the parallax factor coverage to vary because stars on the ecliptic "
caption += "can be observed when they have no parallax offset while stars at the pole are always "
caption += "offset by the full parallax offset."""
displayDict = {'group': reqgroup, 'subgroup': 'Parallax', 'order': order,
'caption': caption}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
metric = metrics.ParallaxCoverageMetric(metricName='Parallax Coverage 24', rmag=24, seeingCol=seeingCol)
plotDict = {}
caption = "Parallax factor coverage for an r=24 star (0 is bad, 0.5-1 is good). "
caption += "One expects the parallax factor coverage to vary because stars on the ecliptic "
caption += "can be observed when they have no parallax offset while stars at the pole are always "
caption += "offset by the full parallax offset."""
displayDict = {'group': reqgroup, 'subgroup': 'Parallax', 'order': order,
'caption': caption}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
metric = metrics.ParallaxDcrDegenMetric(metricName='Parallax-DCR degeneracy 20', rmag=20,
seeingCol=seeingCol)
plotDict = {}
caption = 'Correlation between parallax offset magnitude and hour angle an r=20 star.'
caption += ' (0 is good, near -1 or 1 is bad).'
displayDict = {'group': reqgroup, 'subgroup': 'Parallax', 'order': order,
'caption': caption}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
metric = metrics.ParallaxDcrDegenMetric(metricName='Parallax-DCR degeneracy 24', rmag=24,
seeingCol=seeingCol)
plotDict = {}
caption = 'Correlation between parallax offset magnitude and hour angle an r=24 star.'
caption += ' (0 is good, near -1 or 1 is bad).'
displayDict = {'group': reqgroup, 'subgroup': 'Parallax', 'order': order,
'caption': caption}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
metric = metrics.ProperMotionMetric(metricName='Proper Motion 20', rmag=20, seeingCol=seeingCol)
summaryStats = allStats
plotDict = {'xMin': 0, 'xMax': 3}
displayDict = {'group': reqgroup, 'subgroup': 'Proper Motion', 'order': order,
'caption': 'Proper Motion precision at r=20.'}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
metric = metrics.ProperMotionMetric(rmag=24, metricName='Proper Motion 24', seeingCol=seeingCol)
summaryStats = allStats
plotDict = {'xMin': 0, 'xMax': 10}
displayDict = {'group': reqgroup, 'subgroup': 'Proper Motion', 'order': order,
'caption': 'Proper Motion precision at r=24.'}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
metric = metrics.ProperMotionMetric(rmag=24, normalize=True, metricName='Proper Motion Normed',
seeingCol=seeingCol)
plotDict = {'xMin': 0.2, 'xMax': 0.7}
caption = 'Normalized proper motion at r=24. '
caption += '(normalized to optimum observation cadence - start/end. 1=optimal).'
displayDict = {'group': reqgroup, 'subgroup': 'Proper Motion', 'order': order,
'caption': caption}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, summaryMetrics=summaryStats,
runName=runName, metadata=metadata)
bundleList.append(bundle)
order += 1
##
# Calculate the time uniformity in each filter, for each year.
order = 0
slicer = slicers.HealpixSlicer(nside=nside, lonCol=lonCol, latCol=latCol)
plotFuncs = [plots.TwoDMap()]
step = 0.5
bins = np.arange(0, 365.25 * 10 + 40, 40) - step
metric = metrics.AccumulateUniformityMetric(bins=bins)
plotDict = {'xlabel': 'Night (days)', 'xextent': [bins.min(
) + step, bins.max() + step], 'cbarTitle': 'Uniformity'}
for f in filters:
sqlconstraint = 'filter = "%s"' % (f)
caption = 'Deviation from uniformity in %s band. ' % f
caption += 'Northern Healpixels are at the top of the image.'
caption += '(0=perfectly uniform, 1=perfectly nonuniform).'
displayDict = {'group': uniformitygroup, 'subgroup': 'per night',
'order': filtorder[f], 'caption': caption}
metadata = '%s band' % (f) + slicermetadata
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata,
plotFuncs=plotFuncs)
noSaveBundleList.append(bundle)
##
# Depth metrics.
slicer = slicers.HealpixSlicer(nside=nside, lonCol=lonCol, latCol=latCol)
for f in filters:
propCaption = '%s band, all proposals %s' % (f, slicermetadata)
sqlconstraint = 'filter = "%s"' % (f)
metadata = '%s band' % (f) + slicermetadata
# Number of visits.
metric = metrics.CountMetric(col='observationStartMJD', metricName='NVisits')
plotDict = {'xlabel': 'Number of visits',
'xMin': nvisitsRange['all'][f][0],
'xMax': nvisitsRange['all'][f][1],
'colorMin': nvisitsRange['all'][f][0],
'colorMax': nvisitsRange['all'][f][1],
'binsize': 5,
'logScale': True, 'nTicks': 4, 'colorMin': 1}
summaryStats = allStats
displayDict = {'group': depthgroup, 'subgroup': 'Nvisits', 'order': filtorder[f],
'caption': 'Number of visits in filter %s, %s.' % (f, propCaption)}
histMerge = {'color': colors[f], 'label': '%s' % (f),
'binsize': 5,
'xMin': nvisitsRange['all'][f][0], 'xMax': nvisitsRange['all'][f][1],
'legendloc': 'upper right'}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata,
summaryMetrics=summaryStats)
mergedHistDict['NVisits'].addBundle(bundle, plotDict=histMerge)
bundleList.append(bundle)
# Coadded depth.
metric = metrics.Coaddm5Metric()
plotDict = {'zp': benchmarkVals['coaddedDepth'][f], 'xMin': -0.8, 'xMax': 0.8,
'xlabel': 'coadded m5 - %.1f' % benchmarkVals['coaddedDepth'][f]}
summaryStats = allStats
histMerge = {'legendloc': 'upper right', 'color': colors[f], 'label': '%s' % f, 'binsize': .02,
'xlabel': 'coadded m5 - benchmark value'}
caption = ('Coadded depth in filter %s, with %s value subtracted (%.1f), %s. '
% (f, benchmark, benchmarkVals['coaddedDepth'][f], propCaption))
caption += 'More positive numbers indicate fainter limiting magnitudes.'
displayDict = {'group': depthgroup, 'subgroup': 'Coadded Depth',
'order': filtorder[f], 'caption': caption}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata,
summaryMetrics=summaryStats)
mergedHistDict['coaddm5'].addBundle(bundle, plotDict=histMerge)
bundleList.append(bundle)
# Effective time.
metric = metrics.TeffMetric(metricName='Normalized Effective Time', normed=True,
fiducialDepth=benchmarkVals['singleVisitDepth'])
plotDict = {'xMin': 0.1, 'xMax': 1.1}
summaryStats = allStats
histMerge = {'legendLoc': 'upper right', 'color': colors[f], 'label': '%s' % f, 'binsize': 0.02}
caption = ('"Time Effective" in filter %s, calculated with fiducial single-visit depth of %s mag. '
% (f, benchmarkVals['singleVisitDepth'][f]))
caption += 'Normalized by the fiducial time effective, if every observation was at '
caption += 'the fiducial depth.'
displayDict = {'group': depthgroup, 'subgroup': 'Time Eff.',
'order': filtorder[f], 'caption': caption}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata,
summaryMetrics=summaryStats)
mergedHistDict['NormEffTime'].addBundle(bundle, plotDict=histMerge)
bundleList.append(bundle)
# Put in a z=0.5 Type Ia SN, based on Cambridge 2015 workshop notebook.
# Check for 1) detection in any band, 2) detection on the rise in any band,
# 3) good characterization
peaks = {'uPeak': 25.9, 'gPeak': 23.6, 'rPeak': 22.6, 'iPeak': 22.7, 'zPeak': 22.7, 'yPeak': 22.8}
peakTime = 15.
transDuration = peakTime + 30. # Days
metric = metrics.TransientMetric(riseSlope=-2. / peakTime, declineSlope=1.4 / 30.0,
transDuration=transDuration, peakTime=peakTime,
surveyDuration=runLength,
metricName='SNDetection', **peaks)
caption = 'Fraction of z=0.5 type Ia SN that are detected in any filter'
displayDict = {'group': transgroup, 'subgroup': 'Detected', 'caption': caption}
sqlconstraint = ''
metadata = '' + slicermetadata
plotDict = {}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata)
bundleList.append(bundle)
metric = metrics.TransientMetric(riseSlope=-2. / peakTime, declineSlope=1.4 / 30.0,
transDuration=transDuration, peakTime=peakTime,
surveyDuration=runLength,
nPrePeak=1, metricName='SNAlert', **peaks)
caption = 'Fraction of z=0.5 type Ia SN that are detected pre-peak in any filter'
displayDict = {'group': transgroup, 'subgroup': 'Detected on the rise', 'caption': caption}
plotDict = {}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata)
bundleList.append(bundle)
metric = metrics.TransientMetric(riseSlope=-2. / peakTime, declineSlope=1.4 / 30.,
transDuration=transDuration, peakTime=peakTime,
surveyDuration=runLength, metricName='SNLots',
nFilters=3, nPrePeak=3, nPerLC=2, **peaks)
caption = 'Fraction of z=0.5 type Ia SN that are observed 6 times, 3 pre-peak, '
caption += '3 post-peak, with observations in 3 filters'
displayDict = {'group': transgroup, 'subgroup': 'Well observed', 'caption': caption}
sqlconstraint = 'filter="r" or filter="g" or filter="i" or filter="z" '
plotDict = {}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata)
bundleList.append(bundle)
# Good seeing in r/i band metrics, including in first/second years.
order = 0
for tcolor, tlabel, timespan in zip(['k', 'g', 'r'], ['10 years', '1 year', '2 years'],
['', ' and night<=365', ' and night<=730']):
order += 1
for f in (['r', 'i']):
sqlconstraint = 'filter = "%s" %s' % (f, timespan)
propCaption = '%s band, all proposals %s, over %s.' % (f, slicermetadata, tlabel)
metadata = '%s band, %s' % (f, tlabel) + slicermetadata
seeing_limit = 0.7
airmass_limit = 1.2
metric = metrics.MinMetric(col=seeingCol)
summaryStats = allStats
plotDict = {'xMin': 0.35, 'xMax': 1.5, 'color': tcolor}
displayDict = {'group': seeinggroup, 'subgroup': 'Best Seeing',
'order': filtorder[f] * 100 + order,
'caption': 'Minimum FWHMgeom values in %s.' % (propCaption)}
histMerge = {'label': '%s %s' % (f, tlabel), 'color': tcolor,
'binsize': 0.03, 'xMin': 0.35, 'xMax': 1.5, 'legendloc': 'upper right'}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata,
summaryMetrics=summaryStats)
mergedHistDict['Minseeing'].addBundle(bundle, plotDict=histMerge)
bundleList.append(bundle)
metric = metrics.FracAboveMetric(col=seeingCol, cutoff=seeing_limit)
summaryStats = allStats
plotDict = {'xMin': 0, 'xMax': 1.1, 'color': tcolor}
displayDict = {'group': seeinggroup, 'subgroup': 'Good seeing fraction',
'order': filtorder[f] * 100 + order,
'caption': 'Fraction of total images with FWHMgeom worse than %.1f, in %s'
% (seeing_limit, propCaption)}
histMerge = {'color': tcolor, 'label': '%s %s' % (f, tlabel),
'binsize': 0.05, 'legendloc': 'upper right'}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata,
summaryMetrics=summaryStats)
mergedHistDict['seeingAboveLimit'].addBundle(bundle, plotDict=histMerge)
bundleList.append(bundle)
metric = metrics.MinMetric(col='airmass')
plotDict = {'xMin': 1, 'xMax': 1.5, 'color': tcolor}
summaryStats = allStats
displayDict = {'group': airmassgroup, 'subgroup': 'Best Airmass',
'order': filtorder[f] * 100 + order, 'caption':
'Minimum airmass in %s.' % (propCaption)}
histMerge = {'color': tcolor, 'label': '%s %s' % (f, tlabel),
'binsize': 0.03, 'legendloc': 'upper right'}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata,
summaryMetrics=summaryStats)
mergedHistDict['minAirmass'].addBundle(bundle, plotDict=histMerge)
bundleList.append(bundle)
metric = metrics.FracAboveMetric(col='airmass', cutoff=airmass_limit)
plotDict = {'xMin': 0, 'xMax': 1, 'color': tcolor}
summaryStats = allStats
displayDict = {'group': airmassgroup, 'subgroup': 'Low airmass fraction',
'order': filtorder[f] * 100 + order, 'caption':
'Fraction of total images with airmass higher than %.2f, in %s'
% (airmass_limit, propCaption)}
histMerge = {'color': tcolor, 'label': '%s %s' % (
f, tlabel), 'binsize': 0.05, 'legendloc': 'upper right'}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName, metadata=metadata,
summaryMetrics=summaryStats)
mergedHistDict['fracAboveAirmass'].addBundle(bundle, plotDict=histMerge)
bundleList.append(bundle)
# SNe metrics from UK workshop.
peaks = {'uPeak': 25.9, 'gPeak': 23.6, 'rPeak': 22.6, 'iPeak': 22.7, 'zPeak': 22.7, 'yPeak': 22.8}
peakTime = 15.
transDuration = peakTime + 30. # Days
metric = metrics.TransientMetric(riseSlope=-2. / peakTime, declineSlope=1.4 / 30.0,
transDuration=transDuration, peakTime=peakTime,
surveyDuration=runLength,
metricName='SNDetection', **peaks)
caption = 'Fraction of z=0.5 type Ia SN that are detected at any point in their light curve in any filter'
displayDict = {'group': sngroup, 'subgroup': 'Detected', 'caption': caption}
sqlconstraint = ''
plotDict = {}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName)
bundleList.append(bundle)
metric = metrics.TransientMetric(riseSlope=-2. / peakTime, declineSlope=1.4 / 30.0,
transDuration=transDuration, peakTime=peakTime,
surveyDuration=runLength,
nPrePeak=1, metricName='SNAlert', **peaks)
caption = 'Fraction of z=0.5 type Ia SN that are detected pre-peak in any filter'
displayDict = {'group': sngroup, 'subgroup': 'Detected on the rise', 'caption': caption}
plotDict = {}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName)
bundleList.append(bundle)
metric = metrics.TransientMetric(riseSlope=-2. / peakTime, declineSlope=1.4 / 30.,
transDuration=transDuration, peakTime=peakTime,
surveyDuration=runLength, metricName='SNLots',
nFilters=3, nPrePeak=3, nPerLC=2, **peaks)
caption = 'Fraction of z=0.5 type Ia SN that are observed 6 times, 3 pre-peak, '
caption += '3 post-peak, with observations in 3 filters'
displayDict = {'group': sngroup, 'subgroup': 'Well observed', 'caption': caption}
sqlconstraint = 'filter="r" or filter="g" or filter="i" or filter="z" '
plotDict = {}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName)
bundleList.append(bundle)
propIDOrderDict = {}
orderVal = 100
for propID in propids:
propIDOrderDict[propID] = orderVal
orderVal += 100
# Full range of dates:
metric = metrics.FullRangeMetric(col='observationStartMJD')
plotFuncs = [plots.HealpixSkyMap(), plots.HealpixHistogram()]
caption = 'Time span of survey.'
sqlconstraint = ''
plotDict = {}
displayDict = {'group': rangeGroup, 'caption': caption}
bundle = metricBundles.MetricBundle(metric, slicer, sqlconstraint, plotDict=plotDict,
displayDict=displayDict, runName=runName)
bundleList.append(bundle)
for f in filters:
for propid in propids:
displayDict = {'group': rangeGroup, 'subgroup': propids[propid], 'caption': caption,
'order': filtorder[f]}
md = '%s, %s' % (f, propids[propid])
sql = 'filter="%s" and proposalId=%i' % (f, propid)
bundle = metricBundles.MetricBundle(metric, slicer, sql, plotDict=plotDict,
metadata=md, plotFuncs=plotFuncs,
displayDict=displayDict, runName=runName)
bundleList.append(bundle)
# Alt az plots
slicer = slicers.HealpixSlicer(nside=64, latCol='zenithDistance', lonCol='azimuth', useCache=False)
metric = metrics.CountMetric('observationStartMJD', metricName='Nvisits as function of Alt/Az')
plotDict = {}
plotFuncs = [plots.LambertSkyMap()]
displayDict = {'group': altAzGroup, 'caption': 'Alt Az pointing distribution'}
for f in filters:
for propid in propids:
displayDict = {'group': altAzGroup, 'subgroup': propids[propid],
'caption': 'Alt Az pointing distribution',
'order': filtorder[f]}
md = '%s, %s' % (f, propids[propid])
sql = 'filter="%s" and proposalId=%i' % (f, propid)
bundle = metricBundles.MetricBundle(metric, slicer, sql, plotDict=plotDict,
plotFuncs=plotFuncs, metadata=md,
displayDict=displayDict, runName=runName)
bundleList.append(bundle)
sql = ''
md = 'all observations'
displayDict = {'group': altAzGroup, 'subgroup': 'All Observations',
'caption': 'Alt Az pointing distribution'}
bundle = metricBundles.MetricBundle(metric, slicer, sql, plotDict=plotDict,
plotFuncs=plotFuncs, metadata=md,
displayDict=displayDict, runName=runName)
bundleList.append(bundle)
# Median inter-night gap (each and all filters)
slicer = slicers.HealpixSlicer(nside=nside, lonCol=lonCol, latCol=latCol)
metric = metrics.InterNightGapsMetric(metricName='Median Inter-Night Gap')
sqls = ['filter = "%s"' % f for f in filters]
orders = [filtorder[f] for f in filters]
orders.append(0)
sqls.append('')
for sql, order in zip(sqls, orders):
displayDict = {'group': intergroup, 'subgroup': 'Median Gap', 'caption': 'Median gap between days',
'order': order}
bundle = metricBundles.MetricBundle(metric, slicer, sql, displayDict=displayDict, runName=runName)
bundleList.append(bundle)
# Max inter-night gap in r and all bands
dslicer = slicers.HealpixSlicer(nside=nside, lonCol='ditheredRA', latCol='ditheredDec')
metric = metrics.InterNightGapsMetric(metricName='Max Inter-Night Gap', reduceFunc=np.max)
plotDict = {'percentileClip': 95.}
for sql, order in zip(sqls, orders):
displayDict = {'group': intergroup, 'subgroup': 'Max Gap', 'caption': 'Max gap between nights',
'order': order}
bundle = metricBundles.MetricBundle(metric, dslicer, sql, displayDict=displayDict,
plotDict=plotDict, runName=runName)
bundleList.append(bundle)
# largest phase gap for periods
periods = [0.1, 1.0, 10., 100.]
sqls = {'u': 'filter = "u"', 'r': 'filter="r"',
'g,r,i,z': 'filter="g" or filter="r" or filter="i" or filter="z"',
'all': ''}
for sql in sqls:
for period in periods:
displayDict = {'group': phaseGroup,
'subgroup': 'period=%.2f days, filter=%s' % (period, sql),
'caption': 'Maximum phase gaps'}
metric = metrics.PhaseGapMetric(nPeriods=1, periodMin=period, periodMax=period,
metricName='PhaseGap, %.1f' % period)
bundle = metricBundles.MetricBundle(metric, slicer, sqls[sql],
displayDict=displayDict, runName=runName)
bundleList.append(bundle)
# NEO XY plots
slicer = slicers.UniSlicer()
metric = metrics.PassMetric(metricName='NEODistances')
stacker = stackers.NEODistStacker()
stacker2 = stackers.EclipticStacker()
for f in filters:
plotFunc = plots.NeoDistancePlotter(eclipMax=10., eclipMin=-10.)
caption = 'Observations within 10 degrees of the ecliptic. Distance an H=22 NEO would be detected'
displayDict = {'group': NEOGroup, 'subgroup': 'xy', 'order': filtorder[f],
'caption': caption}
plotDict = {}
sqlconstraint = 'filter = "%s"' % (f)
bundle = metricBundles.MetricBundle(metric, slicer,
sqlconstraint, displayDict=displayDict,
stackerList=[stacker, stacker2],
plotDict=plotDict,
plotFuncs=[plotFunc])
noSaveBundleList.append(bundle)
# Solar elongation
sqls = ['filter = "%s"' % f for f in filters]
orders = [filtorder[f] for f in filters]
sqls.append('')
orders.append(0)
for sql, order in zip(sqls, orders):
plotFuncs = [plots.HealpixSkyMap(), plots.HealpixHistogram()]
displayDict = {'group': NEOGroup, 'subgroup': 'Solar Elongation',
'caption': 'Median solar elongation in degrees', 'order': order}
metric = metrics.MedianMetric('solarElong')
slicer = slicers.HealpixSlicer(nside=nside, lonCol=lonCol, latCol=latCol)
bundle = metricBundles.MetricBundle(metric, slicer, sql, displayDict=displayDict,
plotFuncs=plotFuncs)
bundleList.append(bundle)
plotFuncs = [plots.HealpixSkyMap(), plots.HealpixHistogram()]
displayDict = {'group': NEOGroup, 'subgroup': 'Solar Elongation',
'caption': 'Minimum solar elongation in degrees', 'order': order}
metric = metrics.MinMetric('solarElong')
slicer = slicers.HealpixSlicer(nside=nside, lonCol=lonCol, latCol=latCol)
bundle = metricBundles.MetricBundle(metric, slicer, sql, displayDict=displayDict,
plotFuncs=plotFuncs)
bundleList.append(bundle)
return (metricBundles.makeBundlesDictFromList(bundleList), mergedHistDict,
metricBundles.makeBundlesDictFromList(noSaveBundleList))
help="Skip the metrics that do not get saved as npz files.")
parser.set_defaults()
args, extras = parser.parse_known_args()
# Build metric bundles.
(bundleDict, mergedHistDict, noSaveBundleDict) = makeBundleList(args.dbFile, nside=args.nside,
lonCol=args.lonCol, latCol=args.latCol,
benchmark=args.benchmark,
seeingCol=args.seeingCol)
# Set up / connect to resultsDb.
resultsDb = db.ResultsDb(outDir=args.outDir)
# Connect to opsimdb.
opsdb = db.OpsimDatabaseV4(args.dbFile)
if args.runNoSave:
group = metricBundles.MetricBundleGroup(noSaveBundleDict, opsdb, saveEarly=False,
outDir=args.outDir, resultsDb=resultsDb)
group.runAll(clearMemory=True, plotNow=True)
del group, noSaveBundleDict
# Set up metricBundleGroup.
group = metricBundles.MetricBundleGroup(bundleDict, opsdb,
outDir=args.outDir, resultsDb=resultsDb)
# Read or run to get metric values.
if args.plotOnly:
group.readAll()
else:
group.runAll()
args = parser.parse_args()
if args.db is None:
if os.path.isfile('trackingDb_sqlite.db'):
os.remove('trackingDb_sqlite.db')
db_files = glob.glob('*.db')
else:
db_files = [args.db]
run_names = [
os.path.basename(name).replace('.db', '') for name in db_files
]
for filename, name in zip(db_files, run_names):
if os.path.isdir(name + '_glance'):
shutil.rmtree(name + '_glance')
opsdb = db.OpsimDatabaseV4(filename)
colmap = batches.ColMapDict()
bdict = {}
bdict.update(batches.glanceBatch(colmap, name))
bdict.update(batches.fOBatch(colmap, name))
resultsDb = db.ResultsDb(outDir=name + '_glance')
group = mb.MetricBundleGroup(bdict,
opsdb,
outDir=name + '_glance',
resultsDb=resultsDb,
saveEarly=False)
group.runAll(clearMemory=True, plotNow=True)
resultsDb.close()
opsdb.close()
db.addRunToDatabase(name + '_glance', 'trackingDb_sqlite.db', None,
def setUp(self):
self.database = os.path.join(getPackageDir('sims_data'), 'OpSimData',
'astro-lsst-01_2014.db')
self.oo = db.OpsimDatabaseV4(database=self.database)
import lsst.sims.maf.batches as batches
import lsst.sims.maf.db as db
import lsst.sims.maf.metricBundles as mb
if __name__ == "__main__":
"""
Run the glance batch on all .db files in a directory.
"""
db_files = glob.glob('*.db')
run_names = [name.replace('.db', '') for name in db_files]
if os.path.isfile('trackingDb_sqlite.db'):
os.remove('trackingDb_sqlite.db')
for name in run_names:
if os.path.isdir(name):
shutil.rmtree(name)
opsdb = db.OpsimDatabaseV4(name + '.db')
colmap = batches.ColMapDict('OpsimV4')
bdict = {}
bdict.update(batches.glanceBatch(colmap, name, slicer_camera='ComCam'))
bdict.update(batches.fOBatch(colmap, name))
resultsDb = db.ResultsDb(outDir=name)
group = mb.MetricBundleGroup(bdict,
opsdb,
outDir=name,
resultsDb=resultsDb)
group.runAll()
group.plotAll()
resultsDb.close()
opsdb.close()
db.addRunToDatabase(name, 'trackingDb_sqlite.db', None, name, '', '',
# Check if user passed directory + filename as opsimDb.
if len(os.path.dirname(args.opsimDb)) > 0:
raise Exception(
'OpsimDB should be just the filename of the sqlite file (not %s). Use --dbDir.'
% (args.opsimDb))
opsimName = args.opsimDb.replace('_sqlite.db', '')
opsimName = opsimName.replace('.db', '')
metadata = args.sqlConstraint.replace('=', '').replace(
'filter', '').replace("'", '').replace('"', '').replace('/', '.')
if not args.skipComp:
verbose = False
# Get db connection info, and connect to database.
dbfile = os.path.join(args.dbDir, args.opsimDb)
oo = db.OpsimDatabaseV4(dbfile)
sqlconstraint = args.sqlConstraint
# Fetch the data from opsim.
simdata, fields = getData(oo, sqlconstraint)
# Set up the time bins for the movie slicer.
start_date = simdata['observationStartMJD'][0]
if args.movieStepsize == 0:
bins = simdata['observationStartMJD']
else:
end_date = simdata['observationStartMJD'].max()
bins = np.arange(start_date, end_date + args.movieStepSize / 2.0,
args.movieStepSize, float)
if args.addPreviousObs:
# Go back and grab all the data, including all previous observations.
if "night =" in sqlconstraint:
sqlconstraint = sqlconstraint.replace("night =", "night <=")
