def test_sort_bar():
from lux.compiler.Compiler import Compiler
from lux.view.View import View
df = pd.read_csv("lux/data/car.csv")
view = View([
lux.Spec(attribute="Acceleration",
data_model="measure",
data_type="quantitative"),
lux.Spec(attribute="Origin",
data_model="dimension",
data_type="nominal")
])
Compiler.determine_encoding(df, view)
assert view.mark == "bar"
assert view.spec_lst[1].sort == ''
df = pd.read_csv("lux/data/car.csv")
view = View([
lux.Spec(attribute="Acceleration",
data_model="measure",
data_type="quantitative"),
lux.Spec(attribute="Name", data_model="dimension", data_type="nominal")
])
Compiler.determine_encoding(df, view)
assert view.mark == "bar"
assert view.spec_lst[1].sort == 'ascending'
def test_vary_filter_val():
df = pd.read_csv("lux/data/olympic.csv")
view = View(["Height", "SportType=Ball"])
view = view.load(df)
df.set_context_as_view(view)
df.show_more()
assert len(
df.recommendation["Filter"]) == len(df["SportType"].unique()) - 1
def enforceSpecifiedChannel(view: View, autoChannel: Dict[str, str]):
"""
Enforces that the channels specified in the View by users overrides the showMe autoChannels.
Parameters
----------
view : lux.view.View
Input View without channel specification.
autoChannel : Dict[str,str]
Key-value pair in the form [channel: attributeName] specifying the showMe recommended channel location.
Returns
-------
view : lux.view.View
View with channel specification combining both original and autoChannel specification.
Raises
------
ValueError
Ensures no more than one attribute is placed in the same channel.
"""
resultDict = {
} # result of enforcing specified channel will be stored in resultDict
specifiedDict = {
} # specifiedDict={"x":[],"y":[list of Dobj with y specified as channel]}
# create a dictionary of specified channels in the given dobj
for val in autoChannel.keys():
specifiedDict[val] = view.getAttrByChannel(val)
resultDict[val] = ""
# for every element, replace with what's in specifiedDict if specified
for sVal, sAttr in specifiedDict.items():
if (len(sAttr) == 1): # if specified in dobj
# remove the specified channel from autoChannel (matching by value, since channel key may not be same)
for i in list(autoChannel.keys()):
if (
(autoChannel[i].attribute == sAttr[0].attribute)
and (autoChannel[i].channel == sVal)
): # need to ensure that the channel is the same (edge case when duplicate Cols with same attribute name)
autoChannel.pop(i)
break
sAttr[0].channel = sVal
resultDict[sVal] = sAttr[0]
elif (len(sAttr) > 1):
raise ValueError(
"There should not be more than one attribute specified in the same channel."
)
# For the leftover channels that are still unspecified in resultDict,
# and the leftovers in the autoChannel specification,
# step through them together and fill it automatically.
leftover_channels = list(
filter(lambda x: resultDict[x] == '', resultDict))
for leftover_channel, leftover_encoding in zip(leftover_channels,
autoChannel.values()):
leftover_encoding.channel = leftover_channel
resultDict[leftover_channel] = leftover_encoding
view.specLst = list(resultDict.values())
return view
def execute_binning(view: View, ldf: LuxDataFrame):
import numpy as np
import pandas as pd
bin_attribute = list(filter(lambda x: x.bin_size != 0,
view.spec_lst))[0]
num_bins = bin_attribute.bin_size
attr_min = min(ldf.unique_values[bin_attribute.attribute])
attr_max = max(ldf.unique_values[bin_attribute.attribute])
attr_type = type(ldf.unique_values[bin_attribute.attribute][0])
#need to calculate the bin edges before querying for the relevant data
bin_width = (attr_max - attr_min) / num_bins
upper_edges = []
for e in range(1, num_bins):
curr_edge = attr_min + e * bin_width
if attr_type == int:
upper_edges.append(str(math.ceil(curr_edge)))
else:
upper_edges.append(str(curr_edge))
upper_edges = ",".join(upper_edges)
view_filter, filter_vars = SQLExecutor.execute_filter(view)
bin_count_query = "SELECT width_bucket, COUNT(width_bucket) FROM (SELECT width_bucket({}, '{}') FROM {}) as Buckets GROUP BY width_bucket ORDER BY width_bucket".format(
bin_attribute.attribute, '{' + upper_edges + '}', ldf.table_name)
bin_count_data = pd.read_sql(bin_count_query, ldf.SQLconnection)
#counts,binEdges = np.histogram(ldf[bin_attribute.attribute],bins=bin_attribute.bin_size)
#binEdges of size N+1, so need to compute binCenter as the bin location
upper_edges = [float(i) for i in upper_edges.split(",")]
if attr_type == int:
bin_centers = np.array(
[math.ceil((attr_min + attr_min + bin_width) / 2)])
else:
bin_centers = np.array([(attr_min + attr_min + bin_width) / 2])
bin_centers = np.append(
bin_centers,
np.mean(np.vstack([upper_edges[0:-1], upper_edges[1:]]), axis=0))
if attr_type == int:
bin_centers = np.append(
bin_centers,
math.ceil((upper_edges[len(upper_edges) - 1] + attr_max) / 2))
else:
bin_centers = np.append(
bin_centers,
(upper_edges[len(upper_edges) - 1] + attr_max) / 2)
if len(bin_centers) > len(bin_count_data):
bucket_lables = bin_count_data['width_bucket'].unique()
for i in range(0, len(bin_centers)):
if i not in bucket_lables:
bin_count_data = bin_count_data.append(
pd.DataFrame([[i, 0]], columns=bin_count_data.columns))
view.data = pd.DataFrame(
np.array([bin_centers, list(bin_count_data['count'])]).T,
columns=[bin_attribute.attribute, "Count of Records (binned)"])
view.data = utils.pandas_to_lux(view.data)
def execute_aggregate(view: View, ldf: LuxDataFrame):
import pandas as pd
x_attr = view.get_attr_by_channel("x")[0]
y_attr = view.get_attr_by_channel("y")[0]
groupby_attr = ""
measure_attr = ""
if (y_attr.aggregation != ""):
groupby_attr = x_attr
measure_attr = y_attr
agg_func = y_attr.aggregation
if (x_attr.aggregation != ""):
groupby_attr = y_attr
measure_attr = x_attr
agg_func = x_attr.aggregation
if (measure_attr != ""):
#barchart case, need count data for each group
if (measure_attr.attribute == "Record"):
where_clause, filterVars = SQLExecutor.execute_filter(view)
count_query = "SELECT {}, COUNT({}) FROM {} {} GROUP BY {}".format(
groupby_attr.attribute, groupby_attr.attribute,
ldf.table_name, where_clause, groupby_attr.attribute)
view.data = pd.read_sql(count_query, ldf.SQLconnection)
view.data = view.data.rename(columns={"count": "Record"})
view.data = utils.pandas_to_lux(view.data)
else:
where_clause, filterVars = SQLExecutor.execute_filter(view)
if agg_func == "mean":
mean_query = "SELECT {}, AVG({}) as {} FROM {} {} GROUP BY {}".format(
groupby_attr.attribute, measure_attr.attribute,
measure_attr.attribute, ldf.table_name, where_clause,
groupby_attr.attribute)
view.data = pd.read_sql(mean_query, ldf.SQLconnection)
view.data = utils.pandas_to_lux(view.data)
if agg_func == "sum":
mean_query = "SELECT {}, SUM({}) as {} FROM {} {} GROUP BY {}".format(
groupby_attr.attribute, measure_attr.attribute,
measure_attr.attribute, ldf.table_name, where_clause,
groupby_attr.attribute)
view.data = pd.read_sql(mean_query, ldf.SQLconnection)
view.data = utils.pandas_to_lux(view.data)
if agg_func == "max":
mean_query = "SELECT {}, MAX({}) as {} FROM {} {} GROUP BY {}".format(
groupby_attr.attribute, measure_attr.attribute,
measure_attr.attribute, ldf.table_name, where_clause,
groupby_attr.attribute)
view.data = pd.read_sql(mean_query, ldf.SQLconnection)
view.data = utils.pandas_to_lux(view.data)
def test_refresh_inplace():
df = pd.DataFrame({
'date': ['2020-01-01', '2020-02-01', '2020-03-01', '2020-04-01'],
'value': [10.5, 15.2, 20.3, 25.2]
})
assert df.data_type['nominal'][0] == 'date'
from lux.view.View import View
view = View(["date", "value"])
view.load(df)
df['date'] = pd.to_datetime(df['date'], format="%Y-%m-%d")
assert df.data_type['temporal'][0] == 'date'
def execute_binning(view: View):
'''
Binning of data points for generating histograms
Parameters
----------
view: lux.View
lux.View object that represents a visualization
ldf : lux.luxDataFrame.LuxDataFrame
LuxDataFrame with specified context.
Returns
-------
None
'''
import numpy as np
import pandas as pd # is this import going to be conflicting with LuxDf?
bin_attribute = list(filter(lambda x: x.bin_size != 0,
view.spec_lst))[0]
#TODO:binning runs for name attribte. Name attribute has datatype quantitative which is wrong.
counts, bin_edges = np.histogram(view.data[bin_attribute.attribute],
bins=bin_attribute.bin_size)
#bin_edges of size N+1, so need to compute bin_center as the bin location
bin_center = np.mean(np.vstack([bin_edges[0:-1], bin_edges[1:]]),
axis=0)
# TODO: Should view.data be a LuxDataFrame or a Pandas DataFrame?
view.data = pd.DataFrame(
np.array([bin_center, counts]).T,
columns=[bin_attribute.attribute, "Count of Records"])
def executeAggregate(view: View):
'''
Aggregate data points on an axis for bar or line charts
Parameters
----------
view: lux.View
lux.View object that represents a visualization
ldf : lux.luxDataFrame.LuxDataFrame
LuxDataFrame with specified context.
Returns
-------
None
'''
import numpy as np
xAttr = view.getAttrByChannel("x")[0]
yAttr = view.getAttrByChannel("y")[0]
groupbyAttr = ""
measureAttr = ""
if (yAttr.aggregation != ""):
groupbyAttr = xAttr
measureAttr = yAttr
aggFunc = yAttr.aggregation
if (xAttr.aggregation != ""):
groupbyAttr = yAttr
measureAttr = xAttr
aggFunc = xAttr.aggregation
allAttrVals = view.data.uniqueValues[groupbyAttr.attribute]
if (measureAttr != ""):
if (measureAttr.attribute == "Record"):
view.data = view.data.reset_index()
view.data = view.data.groupby(
groupbyAttr.attribute).count().reset_index()
view.data = view.data.rename(columns={"index": "Record"})
view.data = view.data[[groupbyAttr.attribute, "Record"]]
else:
groupbyResult = view.data.groupby(groupbyAttr.attribute)
view.data = groupbyResult.agg(aggFunc).reset_index()
resultVals = list(view.data[groupbyAttr.attribute])
if (len(resultVals) != len(allAttrVals)):
# For filtered aggregation that have missing groupby-attribute values, set these aggregated value as 0, since no datapoints
for vals in allAttrVals:
if (vals not in resultVals):
view.data.loc[len(view.data)] = [vals, 0]
assert len(list(view.data[groupbyAttr.attribute])) == len(
allAttrVals
), f"Aggregated data missing values compared to original range of values of `{groupbyAttr.attribute}`."
view.data = view.data.sort_values(by=groupbyAttr.attribute,
ascending=True)
view.data = view.data.reset_index()
view.data = view.data.drop(columns="index")
def execute_filter(view: View):
assert view.data is not None, "execute_filter assumes input view.data is populated (if not, populate with LuxDataFrame values)"
filters = utils.get_filter_specs(view.spec_lst)
if (filters):
# TODO: Need to handle OR logic
for filter in filters:
view.data = PandasExecutor.apply_filter(
view.data, filter.attribute, filter.filter_op,
filter.value)
def combine(colAttrs, accum):
last = (len(colAttrs) == 1)
n = len(colAttrs[0])
for i in range(n):
columnList = copy.deepcopy(accum + [colAttrs[0][i]])
if last:
if len(
filters
) > 0: # if we have filters, generate combinations for each row.
for row in filters:
specLst = copy.deepcopy(columnList + [row])
view = View(
specLst,
title=
f"{row.attribute} {row.filterOp} {row.value}")
collection.append(view)
else:
view = View(columnList)
collection.append(view)
else:
combine(colAttrs[1:], columnList)
def interestingness(view: View, ldf: LuxDataFrame) -> int:
"""
Compute the interestingness score of the view.
The interestingness metric is dependent on the view type.
Parameters
----------
view : View
ldf : LuxDataFrame
Returns
-------
int
Interestingness Score
"""
if view.data is None:
raise Exception(
"View.data needs to be populated before interestingness can be computed. Run Executor.execute(view,ldf)."
)
n_dim = 0
n_msr = 0
filter_specs = utils.get_filter_specs(view.spec_lst)
view_attrs_specs = utils.get_attrs_specs(view.spec_lst)
for spec in view_attrs_specs:
if (spec.attribute != "Record"):
if (spec.data_model == 'dimension'):
n_dim += 1
if (spec.data_model == 'measure'):
n_msr += 1
n_filter = len(filter_specs)
attr_specs = [
spec for spec in view_attrs_specs if spec.attribute != "Record"
]
dimension_lst = view.get_attr_by_data_model("dimension")
measure_lst = view.get_attr_by_data_model("measure")
# Bar Chart
if (n_dim == 1 and (n_msr == 0 or n_msr == 1)):
if (n_filter == 0):
return unevenness(view, ldf, measure_lst, dimension_lst)
elif (n_filter == 1):
return deviation_from_overall(view, ldf, filter_specs,
measure_lst[0].attribute)
# Histogram
elif (n_dim == 0 and n_msr == 1):
if (n_filter == 0):
v = view.data["Count of Records"]
return skewness(v)
elif (n_filter == 1):
return deviation_from_overall(view, ldf, filter_specs,
"Count of Records")
# Scatter Plot
elif (n_dim == 0 and n_msr == 2):
if (n_filter == 1):
v_filter_size = get_filtered_size(filter_specs, view.data)
v_size = len(view.data)
sig = v_filter_size / v_size
else:
sig = 1
return sig * monotonicity(view, attr_specs)
# Scatterplot colored by Dimension
elif (n_dim == 1 and n_msr == 2):
color_attr = view.get_attr_by_channel("color")[0].attribute
C = ldf.cardinality[color_attr]
if (C < 40):
return 1 / C
else:
return -1
# Scatterplot colored by dimension
elif (n_dim == 1 and n_msr == 2):
return 0.2
# Scatterplot colored by measure
elif (n_msr == 3):
return 0.1
# Default
else:
return -1
def test_remove():
from lux.view.View import View
df = pd.read_csv("lux/data/car.csv")
view = View(["Horsepower", "Horsepower"])
view.load(df)
view.remove_column_from_spec_new("Horsepower", remove_first=False)
assert (view.spec_lst == []), "Remove all instances of Horsepower"
df = pd.read_csv("lux/data/car.csv")
view = View(["Horsepower", "Horsepower"])
view.load(df)
view.remove_column_from_spec_new("Horsepower", remove_first=True)
assert (len(view.spec_lst) == 1), "Remove only 1 instances of Horsepower"
assert (view.spec_lst[0].attribute == "Horsepower"
), "Remove only 1 instances of Horsepower"
def filter(ldf):
#for benchmarking
if ldf.toggle_benchmarking == True:
tic = time.perf_counter()
'''
Iterates over all possible values of a categorical variable and generates visualizations where each categorical value filters the data.
Parameters
----------
ldf : lux.luxDataFrame.LuxDataFrame
LuxDataFrame with underspecified context.
Returns
-------
recommendations : Dict[str,obj]
object with a collection of visualizations that result from the Filter action.
'''
recommendation = {
"action":
"Filter",
"description":
"Shows possible visualizations when filtered by categorical variables in the dataset."
}
filters = utils.get_filter_specs(ldf.context)
filter_values = []
output = []
#if Row is specified, create visualizations where data is filtered by all values of the Row's categorical variable
column_spec = utils.get_attrs_specs(ldf.current_view[0].spec_lst)
column_spec_attr = map(lambda x: x.attribute, column_spec)
if len(filters) > 0:
#get unique values for all categorical values specified and creates corresponding filters
for row in filters:
unique_values = ldf.unique_values[row.attribute]
filter_values.append(row.value)
#creates views with new filters
for val in unique_values:
if val not in filter_values:
new_spec = column_spec.copy()
new_filter = lux.Spec(attribute=row.attribute, value=val)
new_spec.append(new_filter)
temp_view = View(new_spec)
output.append(temp_view)
else: #if no existing filters, create filters using unique values from all categorical variables in the dataset
categorical_vars = []
for col in list(ldf.columns):
# if cardinality is not too high, and attribute is not one of the X,Y (specified) column
if ldf.cardinality[col] < 40 and col not in column_spec_attr:
categorical_vars.append(col)
for cat in categorical_vars:
unique_values = ldf.unique_values[cat]
for i in range(0, len(unique_values)):
new_spec = column_spec.copy()
new_filter = lux.Spec(attribute=cat,
filter_op="=",
value=unique_values[i])
new_spec.append(new_filter)
temp_view = View(new_spec)
output.append(temp_view)
vc = lux.view.ViewCollection.ViewCollection(output)
vc = vc.load(ldf)
for view in vc:
view.score = interestingness(view, ldf)
vc = vc.topK(15)
recommendation["collection"] = vc
#for benchmarking
if ldf.toggle_benchmarking == True:
toc = time.perf_counter()
print(f"Performed filter action in {toc - tic:0.4f} seconds")
return recommendation
def generalize(ldf):
#for benchmarking
if ldf.toggleBenchmarking == True:
tic = time.perf_counter()
'''
Generates all possible visualizations when one attribute or filter from the current view is removed.
Parameters
----------
ldf : lux.luxDataFrame.LuxDataFrame
LuxDataFrame with underspecified context.
Returns
-------
recommendations : Dict[str,obj]
object with a collection of visualizations that result from the Generalize action.
'''
# takes in a dataObject and generates a list of new dataObjects, each with a single measure from the original object removed
# --> return list of dataObjects with corresponding interestingness scores
recommendation = {"action":"Generalize",
"description":"Remove one attribute or filter to observe a more general trend."}
output = []
excludedColumns = []
columnSpec = list(filter(lambda x: x.value=="" and x.attribute!="Record", ldf.context))
rowSpecs = utils.getFilterSpecs(ldf.context)
# if we do no have enough column attributes or too many, return no views.
if(len(columnSpec)<2 or len(columnSpec)>4):
recommendation["collection"] = []
return recommendation
for spec in columnSpec:
columns = spec.attribute
if type(columns) == list:
for column in columns:
if column not in excludedColumns:
tempView = View(ldf.context)
tempView.removeColumnFromSpecNew(column)
excludedColumns.append(column)
output.append(tempView)
elif type(columns) == str:
if columns not in excludedColumns:
tempView = View(ldf.context)
tempView.removeColumnFromSpecNew(columns)
excludedColumns.append(columns)
output.append(tempView)
for i, spec in enumerate(rowSpecs):
newSpec = ldf.context.copy()
newSpec.pop(i)
tempView = View(newSpec)
output.append(tempView)
vc = lux.view.ViewCollection.ViewCollection(output)
vc = vc.load(ldf)
recommendation["collection"] = vc
for view in vc:
view.score = interestingness(view,ldf)
vc.sort(removeInvalid=True)
#for benchmarking
if ldf.toggleBenchmarking == True:
toc = time.perf_counter()
print(f"Performed generalize action in {toc - tic:0.4f} seconds")
return recommendation
def determineEncoding(ldf: LuxDataFrame, view: View):
'''
Populates View with the appropriate mark type and channel information based on ShowMe logic
Currently support up to 3 dimensions or measures
Parameters
----------
ldf : lux.luxDataFrame.LuxDataFrame
LuxDataFrame with underspecified context
view : lux.view.View
Returns
-------
None
Notes
-----
Implementing automatic encoding from Tableau's VizQL
Mackinlay, J. D., Hanrahan, P., & Stolte, C. (2007).
Show Me: Automatic presentation for visual analysis.
IEEE Transactions on Visualization and Computer Graphics, 13(6), 1137–1144.
https://doi.org/10.1109/TVCG.2007.70594
'''
# Count number of measures and dimensions
Ndim = 0
Nmsr = 0
filters = []
for spec in view.specLst:
if (spec.value == ""):
if (spec.dataModel == "dimension"):
Ndim += 1
elif (spec.dataModel == "measure"
and spec.attribute != "Record"):
Nmsr += 1
else: # preserve to add back to specLst later
filters.append(spec)
# Helper function (TODO: Move this into utils)
def lineOrBar(ldf, dimension, measure):
dimType = dimension.dataType
# If no aggregation function is specified, then default as average
if (measure.aggregation == ""):
measure.aggregation = "mean"
if (dimType == "temporal" or dimType == "oridinal"):
return "line", {"x": dimension, "y": measure}
else: # unordered categorical
# if cardinality large than 5 then sort bars
if ldf.cardinality[dimension.attribute] > 5:
dimension.sort = "ascending"
return "bar", {"x": measure, "y": dimension}
# ShowMe logic + additional heuristics
#countCol = Spec( attribute="count()", dataModel="measure")
countCol = Spec(attribute="Record",
aggregation="count",
dataModel="measure",
dataType="quantitative")
# xAttr = view.getAttrByChannel("x") # not used as of now
# yAttr = view.getAttrByChannel("y")
# zAttr = view.getAttrByChannel("z")
autoChannel = {}
if (Ndim == 0 and Nmsr == 1):
# Histogram with Count
measure = view.getAttrByDataModel("measure", excludeRecord=True)[0]
if (len(view.getAttrByAttrName("Record")) < 0):
view.specLst.append(countCol)
# If no bin specified, then default as 10
if (measure.binSize == 0):
measure.binSize = 10
autoChannel = {"x": measure, "y": countCol}
view.xMinMax = ldf.xMinMax
view.mark = "histogram"
elif (Ndim == 1 and (Nmsr == 0 or Nmsr == 1)):
# Line or Bar Chart
if (Nmsr == 0):
view.specLst.append(countCol)
dimension = view.getAttrByDataModel("dimension")[0]
measure = view.getAttrByDataModel("measure")[0]
view.mark, autoChannel = lineOrBar(ldf, dimension, measure)
elif (Ndim == 2 and (Nmsr == 0 or Nmsr == 1)):
# Line or Bar chart broken down by the dimension
dimensions = view.getAttrByDataModel("dimension")
d1 = dimensions[0]
d2 = dimensions[1]
if (ldf.cardinality[d1.attribute] < ldf.cardinality[d2.attribute]):
# d1.channel = "color"
view.removeColumnFromSpec(d1.attribute)
dimension = d2
colorAttr = d1
else:
if (d1.attribute == d2.attribute):
view.specLst.pop(
0
) # if same attribute then removeColumnFromSpec will remove both dims, we only want to remove one
else:
view.removeColumnFromSpec(d2.attribute)
dimension = d1
colorAttr = d2
# Colored Bar/Line chart with Count as default measure
if (Nmsr == 0):
view.specLst.append(countCol)
measure = view.getAttrByDataModel("measure")[0]
view.mark, autoChannel = lineOrBar(ldf, dimension, measure)
autoChannel["color"] = colorAttr
elif (Ndim == 0 and Nmsr == 2):
# Scatterplot
view.xMinMax = ldf.xMinMax
view.yMinMax = ldf.yMinMax
view.mark = "scatter"
autoChannel = {"x": view.specLst[0], "y": view.specLst[1]}
elif (Ndim == 1 and Nmsr == 2):
# Scatterplot broken down by the dimension
measure = view.getAttrByDataModel("measure")
m1 = measure[0]
m2 = measure[1]
colorAttr = view.getAttrByDataModel("dimension")[0]
view.removeColumnFromSpec(colorAttr)
view.xMinMax = ldf.xMinMax
view.yMinMax = ldf.yMinMax
view.mark = "scatter"
autoChannel = {"x": m1, "y": m2, "color": colorAttr}
elif (Ndim == 0 and Nmsr == 3):
# Scatterplot with color
view.xMinMax = ldf.xMinMax
view.yMinMax = ldf.yMinMax
view.mark = "scatter"
autoChannel = {
"x": view.specLst[0],
"y": view.specLst[1],
"color": view.specLst[2]
}
if (autoChannel != {}):
view = Compiler.enforceSpecifiedChannel(view, autoChannel)
view.specLst.extend(filters) # add back the preserved filters
