def test_server_amubox():
tmp_path = make_tmp_dir()
name = op.join(tmp_path, "data_test_macaque.zip")
code = "RDxdxzmX89xcABG"
server = "https://amubox.univ-amu.fr"
add = "{}/public.php?service=files&t={}&download".format(server, code)
cmd = "wget --no-check-certificate \"{}\" -O {}".format(add, name)
os.system(cmd)
def test_load_test_data_zenodo():
tmp_path = make_tmp_dir()
name = "Juna_Chimp"
data_path = load_test_data(name=name, path_to=tmp_path)
print(data_path)
assert os.path.exists(data_path)
assert len(os.listdir(data_path))
shutil.rmtree(data_path)
import os.path as op
from macapype.utils.utils_tests import make_tmp_dir
from macapype.utils.misc import parse_key
from macapype.pipelines.prepare import (create_short_preparation_pipe,
create_long_single_preparation_pipe,
create_long_multi_preparation_pipe)
data_path = make_tmp_dir()
def test_create_short_auto_preparation_pipe():
params = {"short_preparation_pipe": {"bet_crop": {}}}
# running workflow
segment_pnh = create_short_preparation_pipe(
params=parse_key(params, "short_preparation_pipe"),
name="short_auto_preparation_pipe")
segment_pnh.base_dir = data_path
segment_pnh.write_graph(graph2use="colored")
assert op.exists(
op.join(data_path, "short_auto_preparation_pipe", "graph.png"))
def test_create_short_auto_reorient_preparation_pipe():
params = {
"short_preparation_pipe": {