def test_resolve_with_existing_values_allowing_overwrite(self):
# setup
assay_A = main_factory.AssayFactory(line=self.BW1,
protocol=self.protocol)
assay_B = main_factory.AssayFactory(line=self.BW1,
protocol=self.protocol)
hours = models.MeasurementUnit.objects.get(unit_name="hours")
na = models.MeasurementUnit.objects.get(unit_name="n/a")
mtype = main_factory.MeasurementTypeFactory()
measurement_A = main_factory.MeasurementFactory(assay=assay_A,
measurement_type=mtype,
x_units=hours,
y_units=na)
measurement_B = main_factory.MeasurementFactory(assay=assay_B,
measurement_type=mtype,
x_units=hours,
y_units=na)
main_factory.ValueFactory(measurement=measurement_A, x=[24])
main_factory.ValueFactory(measurement=measurement_B, x=[24])
mpr = list(
self._generate_measurement_product(
names=[assay_A.name, assay_B.name],
types=[mtype.type_name],
points=[[[24], [1]]],
))
parsed = ParseResult(
series_data=mpr,
record_src="row",
any_time=True,
has_all_times=True,
)
self.load.options |= LoadRequest.Options.allow_overwrite
resolver, type_resolver = self._make_resolvers(parsed)
# exec
context = resolver.resolve(type_resolver)
# asserts
assert context == {
"conflicted_from_import": 0,
"conflicted_from_study": 0,
"file_has_times": True,
"file_has_units": True,
"importId": self.load.request,
"loa_pks": {assay_A.pk, assay_B.pk},
"matched_assays": True,
"totalPages": 1,
"total_vals": 2,
"use_assay_times": False,
}
def _build_measurements(cls, measurement_id, category, line, metabolite, values):
protocol = factory.ProtocolFactory(categorization=category)
assay = factory.AssayFactory(line=line, protocol=protocol)
measurement = factory.MeasurementFactory(
id=measurement_id, assay=assay, measurement_type=metabolite
)
for x, y in values:
factory.ValueFactory(measurement=measurement, x=[x], y=[y])
def _setup_study_with_data_for_export(self):
# create study and line with 30 assays
# each assay with one measurement having one value
self.study = factory.StudyFactory()
self.line = factory.LineFactory(study=self.study)
for _i in range(30):
assay = factory.AssayFactory(line=self.line)
measurement = factory.MeasurementFactory(assay=assay)
factory.ValueFactory(measurement=measurement)
def setUpTestData(cls):
super().setUpTestData()
User = get_user_model()
cls.admin = User.objects.get(username="******")
# create study and line with 30 assays
# each assay with one measurement having one value
cls.study = factory.StudyFactory()
cls.line = factory.LineFactory(study=cls.study)
for _i in range(30):
assay = factory.AssayFactory(line=cls.line)
measurement = factory.MeasurementFactory(assay=assay)
factory.ValueFactory(measurement=measurement)
