def run_32(blpath, outpath):
os.makedirs(outpath)
fov = 'fovs'
if os.path.exists(fov):
shutil.rmtree(fov)
shutil.copytree(blpath, fov)
main.main2()
outpath_ab_cells = os.path.join(outpath, 'ab_cells')
outpath_valid = os.path.join(outpath, 'valid')
outpath_cells_info = os.path.join(outpath, 'cells_info')
shutil.copytree('ab_cells', outpath_ab_cells)
shutil.copytree('valid', outpath_valid)
shutil.copytree('cells_info', outpath_cells_info)
parser.add_argument('-p', type=list, nargs='+', action='append')
args = parser.parse_args()
f = [ "".join(i[0]) for i in args.f ]
t = args.t
m = args.m
c = args.c
p = [ "".join(i[0]) for i in args.p ]
j = [ handlejson.parse_to_dictionary(open(i).read()) for i in f ]
for singlejson in j:
# do something
l_mv=main.main2(singlejson, p, t, m, c)
for i,seed in enumerate(singlejson['sourceSeeds']):
current_mv = l_mv[i]
conv = convert_class_to_letters.convert_greedy(current_mv,p)
# handlejson.send_response(singlejson['id'],[seed],conv,'test')
arr_tuple_pid_seednr_tag_sol = []
for singlejson in j:
for i,seed in enumerate(singlejson['sourceSeeds']):
current_mv = l_mv[i]
conv = convert_class_to_letters.convert_greedy(current_mv,p)
arr_tuple_pid_seednr_tag_sol.append((singlejson['id'], seed, '', conv))
#arr_tuple_pid_seednr_tag_sol=[
#(1,2,'','a'),
'').strip()
elif 'pdf_path:' in line:
directory = line.replace('pdf_path:', '').replace('\n',
'').strip()
line = fp.readline()
except:
pass
parame = {}
parame['dbpass'] = None
parame['output_format'] = 'csv'
parame['input_files'] = all_files
parame['output_name'] = os.path.join(dir_path, 'output.csv')
parame['template_folder'] = 'extract/templates/nz'
main.main2(parame)
#Use: python batch_print_raw_text.py &> output.txt
# subprocess.check_output(parame)
#Neither of following methods work.
# outputfile = 'output.txt'
# open(outputfile, 'w').close() #clean file first
# try method 1
# orig_stdout = sys.stdout
# orig_stderr = sys.stderr
# f = open(outputfile, 'w')
# sys.stdout = f
# sys.stderr = f
def job2():
main2()
break
parame.append("--debug")
#run main directly
dir_path = os.path.dirname(os.path.realpath(__file__))
parame = {}
parame['dbpass'] = None
parame['output_format'] = 'csv'
parame['input_files'] = all_files
parame['output_name'] = os.path.join(dir_path, 'output.csv')
parame['template_folder'] = 'extract/templates/nz'
try:
re = main.main2(parame)
if re:
shutil.move(os.path.join(directory, firstpdf),
os.path.join(succeed_path, firstpdf))
else:
pass
except Exception as e:
print(e)
#Use: python batch_print_raw_text.py &> output.txt
# subprocess.check_output(parame)
#Neither of following methods work.
# outputfile = 'output.txt'
# open(outputfile, 'w').close() #clean file first
def main():
main2(mode=1)