class Migration(migrations.Migration):
dependencies = [
('classification', '0005_auto_20201001_1706'),
('manual', '0002_deployment'),
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(["fix_matching_flags", "--apply"]))
]
class Migration(migrations.Migration):
dependencies = [
('annotation', '0015_textphenotypematch_ontology_term'),
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(["match_patient_phenotypes", "--clear"]), test=_test_no_ontology),
migrations.RunPython(_one_off_move_ontology)
]
class Migration(migrations.Migration):
dependencies = [
('analysis', '0032_auto_20210409_1333'),
]
operations = [
migrations.RunPython(_one_off_variant_tags),
ManualOperation(task_id=ManualOperation.task_id_manage(["fix_variant_tag_permissions"]),
test=_test_has_variant_tags)
]
class Migration(migrations.Migration):
dependencies = [
('analysis', '0005_auto_20201006_2209'),
('manual', '0002_deployment'),
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(
["fix_analysis_permissions"]))
]
class Migration(migrations.Migration):
dependencies = [
('classification', '0008_new_ekey_pubmed_search_terms'),
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(
["fix_variant_coordinate_abbreviation"]),
test=test_has_abbreviated_variant_coordinate)
]
class Migration(migrations.Migration):
dependencies = [
('annotation', '0028_variantannotation_spliceai_gene_symbol'),
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(
["fix_annotation_link_transcripts"]),
test=_test_has_missing_transcript_versions)
]
class Migration(migrations.Migration):
dependencies = [
('annotation', '0009_vcfannotationstats'),
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(
["calculate_sample_stats", "--clear"]),
test=test_has_sample_stats)
]
class Migration(migrations.Migration):
dependencies = [
('classification', '0025_classification_condition_resolution'),
]
operations = [
migrations.RunPython(_ekey_types),
ManualOperation(task_id=ManualOperation.task_id_manage(["fix_legacy_classification_convert_allele_frequency_from_percent_to_unit"]),
test=_test_has_legacy_allele_frequency)
]
class Migration(migrations.Migration):
dependencies = [
('annotation', '0007_auto_20201112_1727'),
('manual', '0002_deployment'),
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(
["fix_legacy_skipped_vep"]),
test=test_has_vep_skipped)
]
class Migration(migrations.Migration):
dependencies = [
('analysis', '0013_phenotypenodeontologyterm'),
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(
["fix_legacy_phenotype_nodes"]),
test=_test_has_legacy_phenotype_node_ontology),
migrations.RunPython(_one_off_save_phenotype_node_ontology)
]
class Migration(migrations.Migration):
dependencies = [
('annotation', '0021_auto_20210203_1726'),
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(
["gene_annotation", "--missing"])),
ManualOperation(task_id=ManualOperation.task_id_manage(
["calculate_sample_stats"])),
]
class Migration(migrations.Migration):
dependencies = [
('analysis', '0047_alter_damagenode_impact_min'),
('annotation', '0032_auto_20210524_2117'),
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(
["fix_impact_change_choice"]),
test=_test_has_annotation)
]
class Migration(migrations.Migration):
dependencies = [
('analysis', '0015_auto_20210121_2201'),
('snpdb',
'0018_variantallelecollectionrecord_variantallelecollectionsource'
), # Need to run management cmd
]
operations = [
ManualOperation(task_id=ManualOperation.task_id_manage(
["fix_liftover_existing_variant_tags"]),
test=_test_has_variant_tags)
]
class Migration(migrations.Migration):
dependencies = [
('classification', '0027_new_ekey_sample_date'),
]
operations = [
ManualOperation.operation_manage(["fix_allele_frequency_history"])
]