def main(base_dir=DEF_DIR, base_pat=DEF_PAT, vmin=0, vmax=255):
glob_pat = os.path.join(base_dir, base_pat)
for nc_name in glob(glob_pat):
nc_name = os.path.split(nc_name)[1]
print "Drawing for NC name %s" % nc_name
# Get the data and mask it
nc = Dataset(nc_name, "r")
data_var = nc.variables["image"]
data_var.set_auto_maskandscale(False)
data = data_var[:]
data = data.astype(uint8) # How AWIPS reads it
# Create a new figure everytime so things don't get shared
plt.figure()
# Plot the data
print data.min(), data.max()
plt.imshow(data, vmin=vmin, vmax=vmax)
# Add a colorbar and force the colormap
plt.colorbar()
#plt.spectral()
plt.bone()
plt.savefig("plot_ncdata.%s.png" % nc_name)
plt.close()
def plot_binary(arr, output_fn, dpi_to_use=None, vmin=None, vmax=None, fill_figure=False, full_res=False):
if fill_figure:
# dynamic dpi guess (6 inches high)
full_res_dpi = int(arr.shape[0] / float(DEFAULT_FIG_SIZE[1]))
figsize = (arr.shape[1] / float(full_res_dpi), arr.shape[0] / float(full_res_dpi))
if full_res:
dpi_to_use = dpi_to_use or full_res_dpi
else:
dpi_to_use = dpi_to_use or DEFAULT_DPI
print("Figure size: {!r}".format(figsize))
print("DPI: {}".format(dpi_to_use))
else:
dpi_to_use = dpi_to_use or DEFAULT_DPI
figsize = None
plt.figure(figsize=figsize)
print("Minimum: %f | Maximum: %f" % (float(numpy.nanmin(arr)), float(numpy.nanmax(arr))))
if fill_figure:
plt.axes([0, 0, 1, 1])
plt.imshow(arr, vmin=vmin, vmax=vmax)
plt.bone()
if not fill_figure:
plt.colorbar()
plt.savefig(output_fn, dpi=dpi_to_use)
plt.close()
def visualize_array(image_data, label='data_figure'):
"""
Produce a visual representation of the image_data matrix.
Parameters
----------
image_data : 2D array of floats
The pixel values to make into an image.
label : str
The string label to affix to the image. It is used both
to generate a figure number and as the title.
"""
# Treat nan values like zeros for display purposes
image_data = np.nan_to_num(np.copy(image_data))
fig = plt.figure(str_to_int(label))
# Diane made the brilliant suggestion to leave this plot in color.
# It looks much prettier.
plt.bone()
img = plt.imshow(image_data)
img.set_interpolation('nearest')
plt.title(label)
plt.xlabel('Max = {0:.3}, Min = {1:.3}'.format(np.max(image_data),
np.min(image_data)))
fig.show()
fig.canvas.draw()
def plot_binary_file(bf, fill_value=None, dpi=None, vmin=None, vmax=None):
data = FBF(bf)
img_fn = "plot_{}.png".format(data.stemname)
if fill_value is not None:
if numpy.isnan(fill_value):
data = numpy.ma.masked_where(numpy.isfinite(data), data)
else:
data = numpy.ma.masked_where(data == fill_value, data)
if LOG.getEffectiveLevel() <= logging.DEBUG:
LOG.debug("Data Min: {}; Data Max: {}".format(numpy.min(data),
numpy.max(data)))
plt.figure()
if data.ndim == 1:
plt.plot(data)
else:
plt.imshow(data, vmin=vmin, vmax=vmax)
plt.bone()
plt.colorbar()
if dpi:
plt.savefig(img_fn, dpi=dpi)
else:
plt.savefig(img_fn)
plt.close()
return img_fn
def NumofViews(data):
colors = ['#addd8e', '#78c679', '#41ab5d', '#238443', '#005a32'] #run the query: # answers to questions
#hack to get 0 point
plt.bone()
plt.figure(1, figsize=(8, 4))
plots = []
# alternative: draw a bar chart of first 100 values
#+[sum(ys[249:])]
for i in range(len(data)):
plots.append(plt.loglog(data[i]['allxs'], data[i]['allys'], color=colors[i], linestyle='None', marker='.'))
label = 'mode: %d' % data[i]['modex']
plt.annotate(label, (data[i]['modex'], data[i]['modey']), xycoords='data', xytext=(5, 1),
textcoords='offset points', arrowprops=dict(arrowstyle="->"))
plt.title('Number of Views per Question (log-log)')
plt.ylabel('Number of Questions')
plt.xlabel('Number of Views')
leg = plt.legend((plots[0][0], plots[1][0], plots[2][0], plots[3][0], plots[4][0]), (
'Qs posted in last week', 'Qs posted in last month', 'Qs posted in last 6 months', 'Qs posted in last year',
'All Questions'))
for t in leg.get_texts():
t.set_fontsize('x-small') # the legend text fontsize
plt.savefig(var.DIR_DATA + 'Plots/num_of_views.png')
plt.ylim(ymin=0.8)
plt.show()
def plot_binary_file(bf, fill_value=None, dpi=None, vmin=None, vmax=None):
data = FBF(bf)
img_fn = "plot_{}.png".format(data.stemname)
if fill_value is not None:
if numpy.isnan(fill_value):
data = numpy.ma.masked_where(numpy.isfinite(data), data)
else:
data = numpy.ma.masked_where(data == fill_value, data)
if LOG.getEffectiveLevel() <= logging.DEBUG:
LOG.debug("Data Min: {}; Data Max: {}".format(numpy.min(data), numpy.max(data)))
plt.figure()
if data.ndim == 1:
plt.plot(data)
else:
plt.imshow(data, vmin=vmin, vmax=vmax)
plt.bone()
plt.colorbar()
if dpi:
plt.savefig(img_fn, dpi=dpi)
else:
plt.savefig(img_fn)
plt.close()
return img_fn
def plot_irish(som, data):
# Plotting the response for each pattern in the iris dataset
plt.bone()
plt.pcolor(som.distance_map().T) # plotting the distance map as background
plt.colorbar()
target = np.genfromtxt('iris.csv', delimiter=',', usecols=(4), dtype=str)
t = np.zeros(len(target), dtype=int)
t[target == 'setosa'] = 0
t[target == 'versicolor'] = 1
t[target == 'virginica'] = 2
# use different colors and markers for each label
markers = ['o', 's', 'D']
colors = ['r', 'g', 'b']
for cnt, xx in enumerate(data):
w = som.winner(xx) # getting the winner
# palce a marker on the winning position for the sample xx
plt.plot(w[0] + .5,
w[1] + .5,
markers[t[cnt]],
markerfacecolor='None',
markeredgecolor=colors[t[cnt]],
markersize=12,
markeredgewidth=2)
plt.axis([0, 10, 0, 10])
plt.show()
def plot_binary(arr, output_fn, dpi_to_use=None, vmin=None, vmax=None, fill_figure=False, full_res=False):
if fill_figure:
# dynamic dpi guess (6 inches high)
full_res_dpi = int(arr.shape[0] / float(DEFAULT_FIG_SIZE[1]))
figsize = (arr.shape[1] / float(full_res_dpi), arr.shape[0] / float(full_res_dpi))
if full_res:
dpi_to_use = dpi_to_use or full_res_dpi
else:
dpi_to_use = dpi_to_use or DEFAULT_DPI
print("Figure size: {!r}".format(figsize))
print("DPI: {}".format(dpi_to_use))
else:
dpi_to_use = dpi_to_use or DEFAULT_DPI
figsize = None
plt.figure(figsize=figsize)
print("Minimum: %f | Maximum: %f" % (numpy.nanmin(arr), numpy.nanmax(arr)))
if fill_figure:
plt.axes([0, 0, 1, 1])
plt.imshow(arr, vmin=vmin, vmax=vmax)
plt.bone()
if not fill_figure:
plt.colorbar()
plt.savefig(output_fn, dpi=dpi_to_use)
plt.close()
def visualize_array(image_data, label="data_figure"):
"""
Produce a visual representation of the image_data matrix.
Parameters
----------
image_data : 2D array of floats
The pixel values to make into an image.
label : str
The string label to affix to the image. It is used both
to generate a figure number and as the title.
"""
# Treat nan values like zeros for display purposes
image_data = np.nan_to_num(np.copy(image_data))
fig = plt.figure(str_to_int(label))
# Diane made the brilliant suggestion to leave this plot in color.
# It looks much prettier.
plt.bone()
img = plt.imshow(image_data)
img.set_interpolation("nearest")
plt.title(label)
plt.xlabel("Max = {0:.3}, Min = {1:.3}".format(np.max(image_data), np.min(image_data)))
fig.show()
fig.canvas.draw()
def save_image(img, img_title, title):
plt.bone()
plt.clf()
plt.axis('off')
plt.figimage(img)
dpi = 100
plt.gcf().set_size_inches(
(img.shape[1] / float(dpi), img.shape[0] / float(dpi)))
plt.savefig("result/" + img_title + "_" + title + ".png", dpi=dpi)
def stim_show(images):
'''
Plots every image in images (using imshow)
'''
til = __tile_raster_images(images,
np.array([images.shape[1]**.5, images.shape[1]**.5], 'int'),
np.array([images.shape[0]**.5, images.shape[0]**.5], 'int'),
tile_spacing = (5,5))
f = plt.imshow(til)
plt.bone()
plt.xticks([]), plt.yticks([])
plt.show()
return f
def stim_show(images, img_shape, tile_shape):
'''
Plots every image in images (using imshow)
'''
import matplotlib.pyplot as plt
til = __tile_raster_images(images + .5,
img_shape,
tile_shape,
tile_spacing=(1, 1))
f = plt.imshow(til, interpolation='nearest')
plt.bone()
plt.xticks([]), plt.yticks([])
plt.show()
return f
def main(fill=-999.0):
W=Workspace('.')
for fn in glob("result_*.real4.*.*"):
print "Plotting for %s" % fn
plt.figure()
fbf_attr = fn.split(".")[0]
result = getattr(W, fbf_attr)
result = numpy.ma.masked_where(result == FILL, result)
print result.min(),result.max()
plt.imshow(result)
plt.bone()
plt.colorbar()
plt.savefig("plot_result.%s.png" % fbf_attr)
plt.close()
def plot_map(self):
#som_output_weights = self.map_som # SOM outputs
som_distance_map = self.map_som.distance_map() # distance map of SOM
#print(som_distance_map)
plt.figure()
plt.bone()
plt.pcolor(som_distance_map.T)
#plt.pcolor(som_distance_map.T, cmap='bone_r')
plt.colorbar()
plt.title('fsom object with ' + str(self.x_n * self.y_n) +
' clusters and ' + str(self.nb_metaclusters) +
' metaclusters')
plt.savefig('Resultats/4_Flowsom/Figure_1 - som ' + str(self.x_n) +
'x' + str(self.y_n) + '.png')
plt.show
def plot_binary(data, title,
fill_value=DEFAULT_FILL_VALUE,
vmin=None, vmax=None):
# TODO, there's probably a better way to show 3D data
raw_data = numpy.nansum(data, axis=0) if len(data.shape) > 2 else data
# mask the data based on the fill value
temp_mask = numpy.isnan(raw_data) if fill_value is numpy.nan else raw_data == fill_value
masked_data = numpy.ma.masked_where(temp_mask, raw_data)
# plot the figure
figure = plt.figure()
axes = figure.add_subplot(111)
plt.imshow(masked_data, vmin=vmin, vmax=vmax)
axes.set_title(title)
plt.bone()
plt.colorbar()
def plot_slice(slice_in, is_anns = False, num_anns = 4):
slice_in = np.squeeze(slice_in)
plt.figure()
plt.set_cmap(plt.bone())
if is_anns:
plt.pcolormesh(slice_in, vmin = 0, vmax = num_anns - 1)
else:
plt.pcolormesh(slice_in)
plt.show()
def plot_meta_label_on_map(self):
som_distance_map = self.map_som.distance_map() # distance map of SOM
plt.figure(figsize=(18.5, 10.5))
plt.bone()
plt.pcolor(som_distance_map.T)
plt.colorbar()
plt.title('fsom object ' + str(self.x_n * self.y_n) +
' clusters and ' + str(self.nb_metaclusters) +
' metaclusters')
dictio = self.dict_meta_labels
colors = [
"r", "g", "b", "y", "c", (0, 0.1, 0.8), (1, 0.5, 0), (1, 1, 0.3),
"m", (0.4, 0.6, 0)
]
for w, meta_cell in dictio.items():
samples = self.sample_by_pos_map[w]
nb_sa = len(samples)
winner = self.map_som.winner(
samples[0]
) # make prediction, prediction = the closest entry location in the SOM
c = self.map_class[
winner] # from the location info get cluster info
plt.text(w[0] + .2,
w[1] + .2,
meta_cell,
color=colors[c],
fontsize=10)
plt.text(w[0] + .5, w[1] + .7, nb_sa, color=colors[c], fontsize=12)
cnt = self.data['category']
col = []
for m in cnt:
col.append(colors[m])
w1 = self.locationSOM_w1
w2 = self.locationSOM_w2
plt.scatter(w1, w2, s=200, c=col, marker='o')
plt.axis([0, self.x_n, 0, self.y_n])
plt.savefig('Resultats/4_Flowsom/Figure 3 Grid visualisation - som ' +
str(self.x_n) + 'x' + str(self.y_n) + ' metacluster.png')
plt.show()
from minisom import MiniSom
from numpy import genfromtxt, array, linalg, zeros, mean, std, apply_along_axis, load
data = load('corrCoef.npy')
som = MiniSom(10, 10, 54, sigma=1.0, learning_rate=0.5)
som.random_weights_init(data)
print("Training")
som.train_random(data, 100)
print("\nReady!!!")
from matplotlib.pyplot import plot, axis, show, pcolor, colorbar, bone
bone()
pcolor(som.distance_map().T)
colorbar()
target = load('input.npy')[1]
markers = ['o', 's']
colors = ['r', 'g']
for cnt, xx in enumerate(data):
w = som.winner(xx)
plot(w[0] + .5,
w[1] + .5,
markers[target[cnt]],
markerfacecolor='None',
markeredgecolor=colors[target[cnt]],
X = data.iloc[:,:-1].values
y = data.iloc[:,-1].values
#Scaling the features
from sklearn.preprocessing import MinMaxScaler
sc = MinMaxScaler(feature_range= (0,1))
X = sc.fit_transform(X)
#Imprting the Minisom Class
from minisom import MiniSom
ms = MiniSom(10,10, input_len= 15, sigma= 1.0, learning_rate= 0.5 )
ms.random_weights_init(X)
ms.train_random(X, num_iteration= 100)
#Visualising
plt.bone()
plt.pcolor(ms.distance_map().T)
plt.colorbar()
markers = ['o','s']
colors = ['r','g']
for i, x in enumerate(X):
w = ms.winner(x)
plt.plot(w[0]+ 0.5, w[1] + 0.5,
marker = markers[y[i]],
markeredgecolor = colors[y[i]],
markerfacecolor = 'None',
markersize = 10,
markeredgewidth = 2)
plt.show()
#finding the frauds
def set_up_visualization(self, brain):
# Prepare visualization.
plt.bone()
# fig : matplotlib figure
# The figure in which a visual representation of the results
# will be presented.
# ax_curiosities,
# ax_rewards,
# ax_ocurrences : matplotlib axes
# The axes in which each of these 2D arrays will be rendered
# as images.
plt.figure(num=73857, figsize=(9, 9))
plt.clf()
self.fig, ((self.ax_rewards, self.ax_curiosities),
(self.ax_activities,
self.ax_occurrences)) = (plt.subplots(2, 2, num=73857))
def dress_axes(ax):
plt.sca(ax)
# patches.Rectangle((x, y), width, height)
ax.add_patch(
patches.Rectangle((-.5, brain.num_actions - .5),
self.num_features,
brain.num_sensors,
facecolor='green',
edgecolor='none',
alpha=.16))
ax.add_patch(
patches.Rectangle((brain.num_actions - .5, -.5),
brain.num_sensors,
self.num_features,
facecolor='green',
edgecolor='none',
alpha=.16))
ax.plot([-.5, self.num_features - .5],
[brain.num_actions - .5, brain.num_actions - .5],
color='blue',
linewidth=.2)
ax.plot([brain.num_actions - .5, brain.num_actions - .5],
[-.5, self.num_features - .5],
color='blue',
linewidth=.2)
ax.plot([-.5, self.num_features - .5], [
brain.num_sensors + brain.num_actions - .5,
brain.num_sensors + brain.num_actions - .5
],
color='blue',
linewidth=.2)
ax.plot([
brain.num_sensors + brain.num_actions - .5,
brain.num_sensors + brain.num_actions - .5
], [-.5, self.num_features - .5],
color='blue',
linewidth=.2)
plt.xlim([-.5, self.num_features - .5])
plt.ylim([-.5, self.num_features - .5])
ax.invert_yaxis()
dress_axes(self.ax_rewards)
dress_axes(self.ax_curiosities)
dress_axes(self.ax_activities)
dress_axes(self.ax_occurrences)
def create_som(data,
labels,
one_hots,
filename_load_weights,
filename_save_weights,
load_weights=False,
num_iteration=100,
plot_data=False,
plot_labels=False,
save_plot=False,
plot_distance_map=False,
show_activations=False,
show_single_chars=False,
filename_plots='unspecified.png'):
assert len(data) == len(labels)
size = int(np.ceil(np.sqrt(len(data))))
input_len = len(data[0])
# Initialization and training
som = MiniSom(x=size,
y=size,
input_len=input_len,
model=rnn,
sigma=1.0,
learning_rate=0.5)
if load_weights:
som.load_weights(filename=filename_load_weights)
else:
som.random_weights_init(data)
print("Training...")
som.train_random(data, num_iteration=num_iteration) # random training
print("\n...ready!")
som.save_weights(filename=filename_save_weights)
print("beginn mapping vectors")
# Plotting the response for each pattern in the data set
if plot_distance_map:
plt.bone()
plt.pcolor(
som.distance_map().T) # plotting the distance map as background
plt.colorbar()
else:
plt.figure(figsize=(size, size))
for i, data_point in enumerate(data):
w = som.winner(data_point) # getting the winner
if plot_data:
# place a string of the vector on the winning position for the sample
plt.text(x=w[0],
y=w[1] + np.random.rand() * 0.9,
s=str(data_point),
size='small',
color='r')
if plot_labels:
#place the string of the label on the winning position for the sample
plt.text(x=w[0] + 0.75,
y=w[1] + np.random.rand() * 0.9,
s=labels[i],
size='small',
color='b')
#add axis
plt.axis([0, size, 0, size])
#save if specified
if save_plot:
plt.savefig('../RNN/SOM_graphics/{}.png'.format(filename_plots))
plt.show()
if show_activations:
for i in range(len(one_hots)):
plt.bone()
plt.pcolor(som.activation_map(
one_hots[i])) # plotting the distance map as background
plt.colorbar()
plt.title('vec_{}'.format(one_hots[i]))
plt.show()
if show_single_chars:
unique_labels = np.unique(labels)
for unique_label in unique_labels:
#plt.figure(figsize=(size, size))
plt.bone()
plt.pcolor(som.distance_map().T
) # plotting the distance map as background
plt.colorbar()
for i, data_point in enumerate(data):
if unique_label == labels[i]:
w = som.winner(data_point) # getting the winner
plt.text(x=w[0] + 0.75,
y=w[1] + np.random.rand() * 0.9,
s=labels[i],
size='small',
color='r')
#plot the vectors
plt.text(x=w[0],
y=w[1] + np.random.rand() * 0.9,
s=str(data_point),
size='small',
color='b')
# add axis
plt.axis([0, size, 0, size])
plt.show()
def draw(t, ind):
for i in range(ind.size):
ax = plt.subplot(1, ind.size, i)
ax.imshow(t[:, ind[i]].reshape(16, 16))
plt.bone()
plt.show()
for img_name in glob("image_*") + glob("prescale_DNB*"):
print "Plotting for %s" % img_name
# Get the data and mask it
img_name = img_name.split(".")[0]
img=getattr(W, img_name)
discard = (img <= -999)
data=ma.masked_array(img, discard)
# Plot the data
print data.min(),data.max()
# Create a new figure everytime so things don't get shared
if fit:
fsize = (array(data.shape)/100.0)[::-1]
plt.figure(figsize=fsize, dpi=100)
else:
plt.figure()
plt.imshow(data)
#plt.spectral()
plt.bone()
if fit:
plt.subplots_adjust(left=0, top=1, bottom=0, right=1, wspace=0, hspace=0)
plt.savefig("plot_%s.png" % img_name, dpi=100)
else:
# Add a colorbar and force the colormap
plt.colorbar()
plt.savefig("plot_%s.png" % img_name)
def get_database(filename, indent=0):
"""
Go through all items in the dataset and print them with custom format
Modelled after Dataset._pretty_str()
"""
import pydicom
import matplotlib.pyplot as plt
dont_print = ['Pixel Data', 'File Meta Information Version']
indent_string = " " * indent
next_indent_string = " " * (indent + 1)
for data_element in filename:
if data_element.VR == "SQ": # a sequence
print(indent_string, data_element.name)
for sequence_item in data_element.value:
get_database(sequence_item, indent + 1)
print(next_indent_string + "---------")
else:
if data_element.name in dont_print:
print("""<item not printed -- in the "don't print" list>""")
else:
repr_value = repr(data_element.value)
if len(repr_value) > 50:
repr_value = repr_value[:50] + "..."
print("{0:s} {1:s} = {2:s}".format(indent_string,
data_element.name,
repr_value))
# 2 ^ 11 bytes = 2048
filename = "datasets/ImagensTC_Pulmao/8.dcm"
dataset = pydicom.dcmread(filename, force=True)
dataset.file_meta.TransferSyntaxUID = pydicom.uid.ImplicitVRLittleEndian
# dataset.pixel_array
# filename = get_testdata_files('MR_small.dcm')[0]
# ds = pydicom.dcmread(filename)
# myprint(ds)
# Normal mode:
print()
print("Filename.........:", filename)
print("Storage type.....:", dataset.SOPClassUID)
print()
pat_name = dataset.PatientName
display_name = pat_name.family_name + ", " + pat_name.given_name
print("Patient's name...:", display_name)
print("Patient id.......:", dataset.PatientID)
print("Modality.........:", dataset.Modality)
print("Study Date.......:", dataset.StudyDate)
# print("Bit Depth........:", dataset.pixel_array)
if 'PixelData' in dataset:
rows = int(dataset.Rows)
cols = int(dataset.Columns)
print("Image size.......: {rows:d} x {cols:d}, {size:d} bytes".format(
rows=rows, cols=cols, size=len(dataset.PixelData)))
if 'PixelSpacing' in dataset:
print("Pixel spacing....:", dataset.PixelSpacing)
# use .get() if not sure the item exists, and want a default value if missing
print("Slice location...:", dataset.get('SliceLocation', "(missing)"))
get_database(dataset)
# plot the image using matplotlib
plt.imshow(dataset.pixel_array, cmap=plt.bone())
plt.show()
def set_up_visualization(self, brain):
"""
Initialize the visualization of the model.
To make the visualization interpretable, there are some
annotations and visual guides added.
Parameters
----------
brain : Brain
The number of actions in the brain is referenced
to customize the display.
"""
# Prepare visualization.
plt.bone()
# fig : matplotlib figure
# The figure in which a visual representation of the results
# will be presented.
# ax_curiosities,
# ax_rewards,
# ax_ocurrences : matplotlib axes
# The axes in which each of these 2D arrays will be rendered
# as images.
plt.figure(num=73857, figsize=(9, 9))
plt.clf()
self.fig, ((self.ax_rewards, self.ax_curiosities),
(self.ax_activities,
self.ax_occurrences)) = (plt.subplots(2, 2, num=73857))
def dress_axes(ax):
"""
Decorate the axes appropriately with visual cues.
"""
plt.sca(ax)
ax.add_patch(
patches.Rectangle((-.5, -.5),
self.num_features,
2.,
facecolor='green',
edgecolor='none',
alpha=.16))
ax.add_patch(
patches.Rectangle((-.5, -.5),
2.,
self.num_features,
facecolor='green',
edgecolor='none',
alpha=.16))
ax.add_patch(
patches.Rectangle((-.5, brain.num_actions + 2. - .5),
self.num_features,
brain.num_sensors,
facecolor='green',
edgecolor='none',
alpha=.16))
ax.add_patch(
patches.Rectangle((brain.num_actions + 2. - .5, -.5),
brain.num_sensors,
self.num_features,
facecolor='green',
edgecolor='none',
alpha=.16))
ax.plot([-.5, self.num_features - .5], [2. - .5, 2. - .5],
color='blue',
linewidth=.2)
ax.plot([2. - .5, 2. - .5], [-.5, self.num_features - .5],
color='blue',
linewidth=.2)
ax.plot([-.5, self.num_features - .5],
[brain.num_actions + 2. - .5, brain.num_actions + 2. - .5],
color='blue',
linewidth=.2)
ax.plot([brain.num_actions + 2. - .5, brain.num_actions + 2. - .5],
[-.5, self.num_features - .5],
color='blue',
linewidth=.2)
ax.plot([-.5, self.num_features - .5], [
brain.num_sensors + brain.num_actions + 2. - .5,
brain.num_sensors + brain.num_actions + 2. - .5
],
color='blue',
linewidth=.2)
ax.plot([
brain.num_sensors + brain.num_actions + 2. - .5,
brain.num_sensors + brain.num_actions + 2. - .5
], [-.5, self.num_features - .5],
color='blue',
linewidth=.2)
plt.xlim([-.5, self.num_features - .5])
plt.ylim([-.5, self.num_features - .5])
ax.invert_yaxis()
dress_axes(self.ax_rewards)
dress_axes(self.ax_curiosities)
dress_axes(self.ax_activities)
dress_axes(self.ax_occurrences)
pyplot.imshow( (true_values- linapprox_values).reshape(orders))
pyplot.colorbar()
pyplot.show()
exit()
pyplot.figure()
minbound = delaunay.min_bound
maxbound = delaunay.max_bound
extent = [minbound[0],maxbound[0],minbound[1],maxbound[1]]
pyplot.bone()
pyplot.figure()
pyplot.imshow( values, extent=extent, origin='lower' )
pyplot.colorbar()
pyplot.figure()
pyplot.imshow( interp_values, extent=extent,origin='lower', interpolation='nearest' )
pyplot.axes().set_aspect('equal')
for el in triangles: #triangulation.get_elements():
plot_triangle(el)
pyplot.colorbar()
pyplot.figure()
pyplot.imshow( abs(interp_values - values), extent=extent,origin='lower' )
pylab.colorbar()
triangles = []
for v in delaunay.vertices: