def test_difference_when_diffs_i_vs_h(self):
irods_metadata = IrodsSeqFileMetadata('/seq/123.bam',
samples={
'name': set(['S1']),
'accession_number':
set(['EGA1']),
'internal_id': set(['1'])
},
libraries={
'name': set(['123']),
'internal_id': set(['123'])
},
studies={
'name':
set(["Crohns disease"]),
'accession_number':
set(['EGAS4']),
'internal_id':
set(['4'])
})
header_metadata = SAMFileHeaderMetadata(
'/seq/123.bam',
samples={
'name': set(['S100']),
'accession_number': set(),
'internal_id': set()
},
libraries={'internal_id': set(['123'])},
studies={})
result = irods_metadata.difference(header_metadata)
self.assertDictEqual(result, {'samples': {'name': set(['S1'])}})
def test_difference_when_no_diffs_i_vs_h(self):
irods_metadata = IrodsSeqFileMetadata('/seq/123.bam',
samples={'name': set(['S1']), 'accession_number': set(), 'internal_id': set()},
libraries={}, studies={})
header_metadata = SAMFileHeaderMetadata('/seq/123.bam',
samples={'name': set(['S1']), 'accession_number' : set(), 'internal_id': set()},
libraries={}, studies={})
result = irods_metadata.difference(header_metadata)
self.assertDictEqual(result, {})
def test_difference_when_diffs_i_vs_h(self):
irods_metadata = IrodsSeqFileMetadata('/seq/123.bam',
samples={'name': set(['S1']), 'accession_number': set(['EGA1']), 'internal_id': set(['1'])},
libraries={'name': set(['123']), 'internal_id': set(['123'])},
studies={'name': set(["Crohns disease"]), 'accession_number': set(['EGAS4']), 'internal_id': set(['4'])})
header_metadata = SAMFileHeaderMetadata('/seq/123.bam',
samples={'name': set(['S100']), 'accession_number' : set(), 'internal_id': set()},
libraries={'internal_id': set(['123'])}, studies={})
result = irods_metadata.difference(header_metadata)
self.assertDictEqual(result, {'samples': {'name': set(['S1'])}})
def test_difference_when_no_diffs_i_vs_h(self):
irods_metadata = IrodsSeqFileMetadata('/seq/123.bam',
samples={
'name': set(['S1']),
'accession_number': set(),
'internal_id': set()
},
libraries={},
studies={})
header_metadata = SAMFileHeaderMetadata('/seq/123.bam',
samples={
'name': set(['S1']),
'accession_number': set(),
'internal_id': set()
},
libraries={},
studies={})
result = irods_metadata.difference(header_metadata)
self.assertDictEqual(result, {})