def create_megaqc_app():
from megaqc.app import create_app
from megaqc.settings import DevConfig, ProdConfig, TestConfig
if env.bool("FLASK_DEBUG", False):
CONFIG = DevConfig()
elif env.bool("MEGAQC_PRODUCTION", False):
CONFIG = ProdConfig()
else:
CONFIG = TestConfig()
if settings.run_db_check:
# Attempt to connect to the database exists to check that it exists
try:
dbengine = sqlalchemy.create_engine(
CONFIG.SQLALCHEMY_DATABASE_URI).connect()
metadata = sqlalchemy.MetaData(dbengine, reflect=True)
assert "sample_data" in metadata.tables
except:
print(
"\n##### ERROR! Could not find table 'sample_data' in database!"
)
print(
"Has the database been initialised? If not, please run 'megaqc initdb' first"
)
print("Exiting...\n")
sys.exit(1)
else:
dbengine.close()
return create_app(CONFIG)
def create_megaqc_app(info):
import os
from megaqc.app import create_app
from megaqc.settings import TestConfig, DevConfig, ProdConfig
if os.environ.get("FLASK_DEBUG", False):
CONFIG = DevConfig()
elif os.environ.get("MEGAQC_PRODUCTION", False):
CONFIG = ProdConfig()
else:
CONFIG = TestConfig()
return create_app(CONFIG)
import os
from megaqc.app import create_app
from megaqc.settings import TestConfig, DevConfig, ProdConfig
CONFIG = TestConfig()
if os.environ.get('MEGAQC_DEBUG', False):
CONFIG = DevConfig()
elif os.environ.get('MEGAQC_PRODUCTION', False):
CONFIG = ProdConfig()
app = create_app(CONFIG)