def main(iargs=None):
inps = putils.cmd_line_parse(iargs, script='smallbaseline_wrapper')
config = putils.get_config_defaults(config_file='job_defaults.cfg')
job_file_name = 'smallbaseline_wrapper'
job_name = job_file_name
if inps.wall_time == 'None':
inps.wall_time = config[job_file_name]['walltime']
wait_seconds, new_wall_time = putils.add_pause_to_walltime(
inps.wall_time, inps.wait_time)
#########################################
# Submit job
#########################################
if inps.submit_flag:
js.submit_script(job_name, job_file_name, sys.argv[:], inps.work_dir,
new_wall_time)
sys.exit(0)
if not iargs is None:
message_rsmas.log(
inps.work_dir,
os.path.basename(__file__) + ' ' + ' '.join(iargs[:]))
else:
message_rsmas.log(
inps.work_dir,
os.path.basename(__file__) + ' ' + ' '.join(sys.argv[1::]))
os.chdir(inps.work_dir)
time.sleep(wait_seconds)
try:
with open('out_mintpy.o', 'w') as f:
with contextlib.redirect_stdout(f):
smallbaselineApp.main([inps.customTemplateFile])
except:
with open('out_mintpy.e', 'w') as g:
with contextlib.redirect_stderr(g):
smallbaselineApp.main([inps.customTemplateFile])
inps.mintpy_dir = os.path.join(inps.work_dir, pathObj.mintpydir)
putils.set_permission_dask_files(directory=inps.mintpy_dir)
# Email Mintpy results
if inps.email:
email_results.main([inps.customTemplateFile])
return None
def main(iargs=None):
inps = putils.cmd_line_parse(iargs, script='minopy_wrapper')
if not iargs is None:
input_arguments = iargs
else:
input_arguments = sys.argv[1::]
message_rsmas.log(
inps.work_dir,
os.path.basename(__file__) + ' ' + ' '.join(input_arguments))
time.sleep(putils.pause_seconds(inps.wait_time))
#########################################
# Submit job
#########################################
if inps.submit_flag:
job_obj = JOB_SUBMIT(inps)
job_name = 'minopy_wrapper'
job_file_name = job_name
if '--submit' in input_arguments:
input_arguments.remove('--submit')
command = [os.path.abspath(__file__)] + input_arguments
job_obj.submit_script(job_name, job_file_name, command)
os.chdir(inps.work_dir)
try:
with open('out_minopy.o', 'w') as f:
with contextlib.redirect_stdout(f):
smallbaselineApp.main(
[inps.custom_template_file, '--dir', pathObj.mintpydir])
except:
with open('out_minopy.e', 'w') as g:
with contextlib.redirect_stderr(g):
smallbaselineApp.main(
[inps.custom_template_file, '--dir', pathObj.mintpydir])
inps.mintpy_dir = os.path.join(inps.work_dir, pathObj.mintpydir)
putils.set_permission_dask_files(directory=inps.mintpy_dir)
# Email Minopy results
if inps.email:
email_results.main([inps.custom_template_file, '--minopy'])
return None
def main(iargs=None):
inps = putils.cmd_line_parse(iargs, script='smallbaseline_wrapper')
time.sleep(putils.pause_seconds(inps.wait_time))
#########################################
# Submit job
#########################################
if inps.submit_flag:
job_name = 'smallbaseline_wrapper'
job_file_name = job_name
js.submit_script(job_name, job_file_name, sys.argv[:], inps.work_dir)
sys.exit(0)
if not iargs is None:
message_rsmas.log(
inps.work_dir,
os.path.basename(__file__) + ' ' + ' '.join(iargs[:]))
else:
message_rsmas.log(
inps.work_dir,
os.path.basename(__file__) + ' ' + ' '.join(sys.argv[1::]))
os.chdir(inps.work_dir)
try:
with open('out_mintpy.o', 'w') as f:
with contextlib.redirect_stdout(f):
smallbaselineApp.main([inps.custom_template_file])
except:
with open('out_mintpy.e', 'w') as g:
with contextlib.redirect_stderr(g):
smallbaselineApp.main([inps.custom_template_file])
inps.mintpy_dir = os.path.join(inps.work_dir, pathObj.mintpydir)
putils.set_permission_dask_files(directory=inps.mintpy_dir)
# Email Mintpy results
if inps.email:
email_results.main([inps.custom_template_file, '--mintpy'])
return None
def main(iargs=None):
inps = putils.cmd_line_parse(iargs, script='smallbaseline_wrapper')
if not iargs is None:
input_arguments = iargs
else:
input_arguments = sys.argv[1::]
message_rsmas.log(inps.work_dir, os.path.basename(__file__) + ' ' + ' '.join(input_arguments))
time.sleep(putils.pause_seconds(inps.wait_time))
#########################################
# stripmap prep to isce
#########################################
if inps.template['acquisition_mode']=='stripmap':
inps.dsetDir = inps.work_dir +'/Igrams';
inps.slcDir = inps.work_dir +'/merged/SLC';
inps.geometryDir = inps.work_dir +'/geom_master';
inps.baselineDir = inps.work_dir +'/baselines';
masterDate= inps.template['stripmapStack.master']
if masterDate=='None':
command1= 'cp -r '+inps.slcDir+'/'+os.listdir(inps.slcDir)[0]+'/'+'masterShelve '+inps.work_dir+'/.';
else:
command1= 'cp -r '+inps.slcDir+'/' + masterDate+'/'+'masterShelve '+inps.work_dir+'/.';
print(command1);subprocess.Popen(command1, shell=True).wait();
inps.metaFile= inps.work_dir+'/' +'masterShelve/data.dat';
command2= 'prep_isce.py -d '+inps.dsetDir+' -m '+inps.metaFile+' -b '+inps.baselineDir+' -g '+inps.geometryDir;
print(command2)
subprocess.Popen(command2, shell=True).wait();
#########################################
# Submit job
#########################################
if inps.submit_flag:
job_obj = JOB_SUBMIT(inps)
job_name = 'smallbaseline_wrapper'
job_file_name = job_name
if '--submit' in input_arguments:
input_arguments.remove('--submit')
command = [os.path.abspath(__file__)] + input_arguments
job_obj.submit_script(job_name, job_file_name, command)
sys.exit(0)
os.chdir(inps.work_dir)
try:
with open('out_mintpy.o', 'w') as f:
with contextlib.redirect_stdout(f):
smallbaselineApp.main([inps.custom_template_file])
except:
with open('out_mintpy.e', 'w') as g:
with contextlib.redirect_stderr(g):
smallbaselineApp.main([inps.custom_template_file])
inps.mintpy_dir = os.path.join(inps.work_dir, pathObj.mintpydir)
putils.set_permission_dask_files(directory=inps.mintpy_dir)
# Email Mintpy results
if inps.email:
email_results.main([inps.custom_template_file, '--mintpy'])
return None