def test_seq_bootstrap(self):
"""
Test sequential bootstrapping length, indicator matrix length and NaN checks
"""
non_nan_meta_labels = self.meta_labeled_events.dropna()
ind_mat = get_ind_matrix(non_nan_meta_labels, self.data)
label_endtime = non_nan_meta_labels.t1
trimmed_price_bars_index = self.data[(self.data.index >= non_nan_meta_labels.index.min()) &
(self.data.index <= non_nan_meta_labels.t1.max())].index
bar_index = list(non_nan_meta_labels.index) # Generate index for indicator matrix from t1 and index
bar_index.extend(non_nan_meta_labels.t1)
bar_index.extend(trimmed_price_bars_index)
bar_index = sorted(list(set(bar_index))) # Drop duplicates and sort
ind_mat_book_implementation = book_ind_mat_implementation(bar_index, label_endtime)
self.assertTrue(bool((ind_mat_book_implementation.values == ind_mat).all()) is True)
# Indicator matrix shape should be (unique(meta_label_index+t1+price_bars_index), t1)
self.assertTrue(ind_mat.shape == (782, 7))
# Check indicator matrix values for specific labels
self.assertTrue(bool((ind_mat[:100, 0] == np.ones(100)).all()) is True)
self.assertTrue(bool((ind_mat[191:340, 2] == np.ones(149)).all()) is True)
self.assertTrue(bool((ind_mat[341:420, 2] == np.zeros(79)).all()) is True)
self.assertTrue(bool((ind_mat[406:412, 4] == np.ones(6)).all()) is True)
self.assertTrue(bool((ind_mat[662:, 6] == np.ones(120)).all()) is True)
bootstrapped_samples = seq_bootstrap(ind_mat, compare=False, verbose=True, warmup_samples=None)
bootstrapped_samples_1000 = seq_bootstrap(ind_mat, compare=True, sample_length=100)
self.assertTrue(len(bootstrapped_samples) == non_nan_meta_labels.shape[0])
self.assertTrue(len(bootstrapped_samples_1000) == 100)
# Test sequential bootstrapping on example from a book
ind_mat = pd.DataFrame(index=range(0, 6), columns=range(0, 3))
ind_mat.loc[:, 0] = [1, 1, 1, 0, 0, 0]
ind_mat.loc[:, 1] = [0, 0, 1, 1, 0, 0]
ind_mat.loc[:, 2] = [0, 0, 0, 0, 1, 1]
ind_mat = ind_mat.values
seq_bootstrap(ind_mat, sample_length=3, verbose=True, warmup_samples=[1]) # Show printed probabilities
# Perform Monte-Carlo test
standard_unq_array = np.zeros(1000) * np.nan
seq_unq_array = np.zeros(1000) * np.nan
for i in range(0, 1000):
bootstrapped_samples = seq_bootstrap(ind_mat, sample_length=3)
random_samples = np.random.choice(ind_mat.shape[1], size=3)
random_unq = get_ind_mat_average_uniqueness(ind_mat[:, random_samples])
sequential_unq = get_ind_mat_average_uniqueness(ind_mat[:, bootstrapped_samples])
standard_unq_array[i] = random_unq
seq_unq_array[i] = sequential_unq
self.assertTrue(np.mean(seq_unq_array) >= np.mean(standard_unq_array))
self.assertTrue(np.median(seq_unq_array) >= np.median(standard_unq_array))
def _generate_bagging_indices(random_state, bootstrap_features, n_features,
max_features, max_samples, ind_mat):
"""Randomly draw feature and sample indices."""
# Get valid random state
random_state = check_random_state(random_state)
# Draw indices
feature_indices = _generate_random_features(random_state,
bootstrap_features, n_features,
max_features)
sample_indices = seq_bootstrap(ind_mat,
sample_length=max_samples,
random_state=random_state)
return feature_indices, sample_indices
uniqueness_array[i] = (label_uniqueness[label_uniqueness > 0].mean())
prob_array = uniqueness_array / sum(uniqueness_array)
phi = [1, 2, 0]
uniqueness_array = np.array([None, None, None])
for i in range(0, 3):
ind_mat_reduced = ind_mat[:, phi + [i]]
label_uniqueness = get_ind_mat_average_uniqueness(
ind_mat_reduced) #[-1] TODO fix thiss
uniqueness_array[i] = (label_uniqueness[label_uniqueness > 0].mean())
prob_array = uniqueness_array / sum(uniqueness_array)
print(prob_array)
samples = seq_bootstrap(ind_mat,
sample_length=4,
warmup_samples=[1],
verbose=True)
print(samples)
### Monte-Carlo experiment (checks to see how sequential bootsrapping will improve average label uniqueness)
standard_unq_array = np.zeros(
10000) * np.nan # Array of random sampling uniqueness
seq_unq_array = np.zeros(
10000) * np.nan # Array of Sequential Bootstapping uniqueness
for i in range(0, 10000):
bootstrapped_samples = seq_bootstrap(ind_mat, sample_length=3)
random_samples = np.random.choice(ind_mat.shape[1], size=3)
random_unq = get_ind_mat_average_uniqueness(ind_mat[:, random_samples])
random_unq_mean = random_unq[random_unq > 0].mean()
def test_seq_bootstrap(self):
"""
Test sequential bootstrapping length, indicator matrix length and NaN checks
"""
non_nan_meta_labels = self.meta_labeled_events.dropna()
ind_mat = get_ind_matrix(non_nan_meta_labels)
self.assertTrue(ind_mat.shape == (
13,
7)) # Indicator matrix shape should be (meta_label_index+t1, t1)
# Check indicator matrix values for specific labels
self.assertTrue(
bool((ind_mat[:, 0] == [1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
).all()) is True)
self.assertTrue(
bool((ind_mat[:, 2] == [0, 0, 0, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0]
).all()) is True)
self.assertTrue(
bool((ind_mat[:, 4] == [0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 0, 0]
).all()) is True)
self.assertTrue(
bool((ind_mat[:, 6] == [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1]
).all()) is True)
bootstrapped_samples = seq_bootstrap(ind_mat,
compare=False,
verbose=True,
warmup_samples=None)
bootstrapped_samples_1000 = seq_bootstrap(ind_mat,
compare=True,
sample_length=100)
self.assertTrue(
len(bootstrapped_samples) == non_nan_meta_labels.shape[0])
self.assertTrue(len(bootstrapped_samples_1000) == 100)
# Test sequential bootstrapping on example from a book
ind_mat = pd.DataFrame(index=range(0, 6), columns=range(0, 3))
ind_mat.loc[:, 0] = [1, 1, 1, 0, 0, 0]
ind_mat.loc[:, 1] = [0, 0, 1, 1, 0, 0]
ind_mat.loc[:, 2] = [0, 0, 0, 0, 1, 1]
ind_mat = ind_mat.values
seq_bootstrap(ind_mat,
sample_length=3,
verbose=True,
warmup_samples=[1]) # Show printed probabilities
# Perform Monte-Carlo test
standard_unq_array = np.zeros(1000) * np.nan
seq_unq_array = np.zeros(1000) * np.nan
for i in range(0, 1000):
bootstrapped_samples = seq_bootstrap(ind_mat, sample_length=3)
random_samples = np.random.choice(ind_mat.shape[1], size=3)
random_unq = get_ind_mat_average_uniqueness(
ind_mat[:, random_samples])
random_unq_mean = random_unq[random_unq > 0].mean()
sequential_unq = get_ind_mat_average_uniqueness(
ind_mat[:, bootstrapped_samples])
sequential_unq_mean = sequential_unq[sequential_unq > 0].mean()
standard_unq_array[i] = random_unq_mean
seq_unq_array[i] = sequential_unq_mean
self.assertTrue(np.mean(seq_unq_array) >= np.mean(standard_unq_array))
self.assertTrue(
np.median(seq_unq_array) >= np.median(standard_unq_array))