def testDumpEnums(self):
"""Test case - to verify enum ordering -
"""
try:
myIo = IoAdapter(raiseExceptions=True)
self.__containerList = myIo.readFile(
inputFilePath=self.__pathPdbxDictionary)
dApi = DictionaryApi(containerList=self.__containerList,
consolidate=True,
verbose=self.__verbose)
#
eList = dApi.getEnumListAlt(category="pdbx_audit_support",
attribute="country")
logger.debug("Item %s Enum list sorted %r\n", "country", eList)
eList = dApi.getEnumListAlt(category="pdbx_audit_support",
attribute="country",
sortFlag=False)
logger.debug("Item %s Enum list unsorted %r\n", "country", eList)
eList = dApi.getEnumListAltWithDetail(
category="pdbx_audit_support", attribute="country")
logger.debug("Item %s Enum with detail list %r\n", "country",
eList)
self.assertGreater(len(eList), 100)
except Exception as e:
logger.exception("Failing with %s", str(e))
self.fail()
def test_dump_enums(self, api_paths):
myIo = IoAdapter(raiseExceptions=True)
containerList = myIo.readFile(
inputFilePath=str(api_paths['pathPdbxDictionary']))
dApi = DictionaryApi(containerList=containerList, consolidate=True)
eList = dApi.getEnumListAlt(category="pdbx_audit_support",
attribute="country")
print("Item %s Enum list sorted %r\n" % ('country', eList))
eList = dApi.getEnumListAlt(category="pdbx_audit_support",
attribute="country",
sortFlag=False)
print("Item %s Enum list unsorted %r\n" % ('country', eList))
eList = dApi.getEnumListAltWithDetail(category="pdbx_audit_support",
attribute="country")
print("Item %s Enum with detail list %r\n" % ('country', eList))
assert len(eList) > 100
class DictionaryData(object):
def __init__(self):
basedir = os.path.join(os.path.dirname(__file__), "..", "dist")
self.dictPath = os.path.join(basedir, "mmcif_pdbx_v5_next.dic")
def readDictionary(self):
myIo = IoAdapterPy()
self.__containerList = myIo.readFile(inputFilePath=self.dictPath)
self._dApi = DictionaryApi(containerList=self.__containerList,
consolidate=True)
assert len(self.getGroups()) > 0, "Failed to load %s" % self.dictPath
def getGroups(self):
groupList = self._dApi.getCategoryGroups()
return groupList
def getTypeRegex(self, cat, attrib):
return self._dApi.getTypeRegex(cat, attrib)
def getTypeRegexAlt(self, cat, attrib):
return self._dApi.getTypeRegexAlt(cat, attrib)
def getDataTypeList(self):
""" Return list of tuples containing ('code','primitive_code','construct','detail' )
"""
return self._dApi.getDataTypeList()
def getEnumList(self, category, attribute, sortFlag=True):
return self._dApi.getEnumList(category, attribute, sortFlag)
def getEnumListAlt(self, category, attribute, sortFlag=True):
return self._dApi.getEnumListAlt(category, attribute, sortFlag)
def getEnumListAltWithDetail(self, category, attribute):
return self._dApi.getEnumListAltWithDetail(category, attribute)
def getAllCategory(self):
"""Returns list of all categories"""
return self._dApi.getCategoryList()
def getCategoryList(self):
return self._dApi.getCategoryList()
def getItemNameList(self, category):
return self._dApi.getItemNameList(category)
def wwPDBContext(self, catItem):
"""Returns true if category or item have local context"""
category, item = catItem.split('.')
if category[0] == "_":
category = category[1:]
#print "CHECKING ", category, item, self.__dictA.getCategoryContextList(category)
if self._dApi.getCategoryContextList(category) == ['WWPDB_LOCAL']:
return True
if self._dApi.getContextList(category, item) == ['WWPDB_LOCAL']:
return True
return False
def getCategoryItemEnum(self, itemName):
"""Returns any archive enum list"""
categoryName = CifName.categoryPart(itemName)
attributeName = CifName.attributePart(itemName)
return self._dApi.getEnumList(categoryName, attributeName)
def getCategoryPdbxItemEnum(self, itemName):
"""Returns any DepUI enum list"""
categoryName = CifName.categoryPart(itemName)
attributeName = CifName.attributePart(itemName)
return self._dApi.getEnumListAlt(categoryName, attributeName)
def getItemRelatedList(self, itemName):
categoryName = CifName.categoryPart(itemName)
attributeName = CifName.attributePart(itemName)
return self._dApi.getItemRelatedList(categoryName, attributeName)