Python fetch_aparc_sub_parcellationの例

コード例 #1

ファイル: test_datasets.py プロジェクト: zahransa/mne-python

def test_fetch_parcellations(tmpdir):
    """Test fetching parcellations."""
    this_subjects_dir = str(tmpdir)
    os.mkdir(op.join(this_subjects_dir, 'fsaverage'))
    os.mkdir(op.join(this_subjects_dir, 'fsaverage', 'label'))
    os.mkdir(op.join(this_subjects_dir, 'fsaverage', 'surf'))
    for hemi in ('lh', 'rh'):
        shutil.copyfile(
            op.join(subjects_dir, 'fsaverage', 'surf', '%s.white' % hemi),
            op.join(this_subjects_dir, 'fsaverage', 'surf', '%s.white' % hemi))
    # speed up by prenteding we have one of them
    with open(op.join(this_subjects_dir, 'fsaverage', 'label',
                      'lh.aparc_sub.annot'), 'wb'):
        pass
    datasets.fetch_aparc_sub_parcellation(subjects_dir=this_subjects_dir)
    with ArgvSetter(('--accept-hcpmmp-license',)):
        datasets.fetch_hcp_mmp_parcellation(subjects_dir=this_subjects_dir)
    for hemi in ('lh', 'rh'):
        assert op.isfile(op.join(this_subjects_dir, 'fsaverage', 'label',
                                 '%s.aparc_sub.annot' % hemi))
    # test our annot round-trips here
    kwargs = dict(subject='fsaverage', hemi='both', sort=False,
                  subjects_dir=this_subjects_dir)
    labels = read_labels_from_annot(parc='HCPMMP1', **kwargs)
    write_labels_to_annot(
        labels, parc='HCPMMP1_round',
        table_name='./left.fsaverage164.label.gii', **kwargs)
    orig = op.join(this_subjects_dir, 'fsaverage', 'label', 'lh.HCPMMP1.annot')
    first = hashfunc(orig)
    new = orig[:-6] + '_round.annot'
    second = hashfunc(new)
    assert first == second

コード例 #2

ファイル: test_datasets.py プロジェクト: wangsl123/mne-python

def test_fetch_parcellations(tmpdir):
    """Test fetching parcellations."""
    this_subjects_dir = str(tmpdir)
    os.mkdir(op.join(this_subjects_dir, 'fsaverage'))
    os.mkdir(op.join(this_subjects_dir, 'fsaverage', 'label'))
    os.mkdir(op.join(this_subjects_dir, 'fsaverage', 'surf'))
    for hemi in ('lh', 'rh'):
        shutil.copyfile(
            op.join(subjects_dir, 'fsaverage', 'surf', '%s.white' % hemi),
            op.join(this_subjects_dir, 'fsaverage', 'surf', '%s.white' % hemi))
    # speed up by prenteding we have one of them
    with open(
            op.join(this_subjects_dir, 'fsaverage', 'label',
                    'lh.aparc_sub.annot'), 'wb'):
        pass
    datasets.fetch_aparc_sub_parcellation(subjects_dir=this_subjects_dir)
    try:
        sys.argv.append('--accept-hcpmmp-license')
        datasets.fetch_hcp_mmp_parcellation(subjects_dir=this_subjects_dir)
    finally:
        sys.argv.pop(-1)
    for hemi in ('lh', 'rh'):
        assert op.isfile(
            op.join(this_subjects_dir, 'fsaverage', 'label',
                    '%s.aparc_sub.annot' % hemi))

コード例 #3

ファイル: test_datasets.py プロジェクト: adykstra/mne-python

def test_fetch_parcellations(tmpdir):
    """Test fetching parcellations."""
    this_subjects_dir = str(tmpdir)
    os.mkdir(op.join(this_subjects_dir, 'fsaverage'))
    os.mkdir(op.join(this_subjects_dir, 'fsaverage', 'label'))
    os.mkdir(op.join(this_subjects_dir, 'fsaverage', 'surf'))
    for hemi in ('lh', 'rh'):
        shutil.copyfile(
            op.join(subjects_dir, 'fsaverage', 'surf', '%s.white' % hemi),
            op.join(this_subjects_dir, 'fsaverage', 'surf', '%s.white' % hemi))
    # speed up by prenteding we have one of them
    with open(op.join(this_subjects_dir, 'fsaverage', 'label',
                      'lh.aparc_sub.annot'), 'wb'):
        pass
    datasets.fetch_aparc_sub_parcellation(subjects_dir=this_subjects_dir)
    with ArgvSetter(('--accept-hcpmmp-license',)):
        datasets.fetch_hcp_mmp_parcellation(subjects_dir=this_subjects_dir)
    for hemi in ('lh', 'rh'):
        assert op.isfile(op.join(this_subjects_dir, 'fsaverage', 'label',
                                 '%s.aparc_sub.annot' % hemi))