def test_plot_sparse_source_estimates():
"""Test plotting of (sparse) source estimates."""
sample_src = read_source_spaces(src_fname)
# dense version
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.zeros((n_verts * n_time))
stc_size = stc_data.size
stc_data[(np.random.rand(stc_size // 20) * stc_size).astype(int)] = \
np.random.RandomState(0).rand(stc_data.size // 20)
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1)
colormap = 'mne_analyze'
plot_source_estimates(stc, 'sample', colormap=colormap,
background=(1, 1, 0),
subjects_dir=subjects_dir, colorbar=True,
clim='auto')
assert_raises(TypeError, plot_source_estimates, stc, 'sample',
figure='foo', hemi='both', clim='auto',
subjects_dir=subjects_dir)
# now do sparse version
vertices = sample_src[0]['vertno']
inds = [111, 333]
stc_data = np.zeros((len(inds), n_time))
stc_data[0, 1] = 1.
stc_data[1, 4] = 2.
vertices = [vertices[inds], np.empty(0, dtype=np.int)]
stc = SourceEstimate(stc_data, vertices, 1, 1)
plot_sparse_source_estimates(sample_src, stc, bgcolor=(1, 1, 1),
opacity=0.5, high_resolution=False)
def test_plot_sparse_source_estimates():
"""Test plotting of (sparse) source estimates
"""
sample_src = read_source_spaces(op.join(data_dir, 'subjects', 'sample',
'bem', 'sample-oct-6-src.fif'))
# dense version
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.zeros((n_verts * n_time))
stc_data[(np.random.rand(20) * n_verts * n_time).astype(int)] = 1
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1)
colormap = mne_analyze_colormap(format='matplotlib')
# don't really need to test matplotlib method since it's not used now...
colormap = mne_analyze_colormap()
plot_source_estimates(stc, 'sample', colormap=colormap,
config_opts={'background': (1, 1, 0)},
subjects_dir=subjects_dir, colorbar=True)
assert_raises(TypeError, plot_source_estimates, stc, 'sample',
figure='foo', hemi='both')
# now do sparse version
vertices = sample_src[0]['vertno']
n_verts = len(vertices)
stc_data = np.zeros((n_verts * n_time))
stc_data[(np.random.rand(20) * n_verts * n_time).astype(int)] = 1
stc_data.shape = (n_verts, n_time)
inds = np.where(np.any(stc_data, axis=1))[0]
stc_data = stc_data[inds]
vertices = [vertices[inds], np.empty(0, dtype=np.int)]
stc = SourceEstimate(stc_data, vertices, 1, 1)
plot_sparse_source_estimates(sample_src, stc, bgcolor=(1, 1, 1),
opacity=0.5, high_resolution=True)
def test_plot_sparse_source_estimates():
"""Test plotting of (sparse) source estimates
"""
# dense version
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.zeros((n_verts * n_time))
stc_data[(np.random.rand(20) * n_verts * n_time).astype(int)] = 1
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1)
colormap = mne_analyze_colormap(format='matplotlib')
# don't really need to test matplotlib method since it's not used now...
colormap = mne_analyze_colormap()
plot_source_estimates(stc, 'sample', colormap=colormap)
# now do sparse version
vertices = sample_src[0]['vertno']
n_verts = len(vertices)
stc_data = np.zeros((n_verts * n_time))
stc_data[(np.random.rand(20) * n_verts * n_time).astype(int)] = 1
stc_data.shape = (n_verts, n_time)
inds = np.where(np.any(stc_data, axis=1))[0]
stc_data = stc_data[inds]
vertices = vertices[inds]
stc = SourceEstimate(stc_data, vertices, 1, 1)
plot_sparse_source_estimates(sample_src, stc, bgcolor=(1, 1, 1),
opacity=0.5, high_resolution=True)
def test_plot_sparse_source_estimates():
"""Test plotting of (sparse) source estimates."""
sample_src = read_source_spaces(src_fname)
# dense version
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.zeros((n_verts * n_time))
stc_size = stc_data.size
stc_data[(np.random.rand(stc_size // 20) * stc_size).astype(int)] = \
np.random.RandomState(0).rand(stc_data.size // 20)
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1)
colormap = 'mne_analyze'
plot_source_estimates(stc, 'sample', colormap=colormap,
background=(1, 1, 0),
subjects_dir=subjects_dir, colorbar=True,
clim='auto')
pytest.raises(TypeError, plot_source_estimates, stc, 'sample',
figure='foo', hemi='both', clim='auto',
subjects_dir=subjects_dir)
# now do sparse version
vertices = sample_src[0]['vertno']
inds = [111, 333]
stc_data = np.zeros((len(inds), n_time))
stc_data[0, 1] = 1.
stc_data[1, 4] = 2.
vertices = [vertices[inds], np.empty(0, dtype=np.int)]
stc = SourceEstimate(stc_data, vertices, 1, 1)
plot_sparse_source_estimates(sample_src, stc, bgcolor=(1, 1, 1),
opacity=0.5, high_resolution=False)
def test_plot_sparse_source_estimates():
"""Test plotting of (sparse) source estimates
"""
# dense version
vertices = [s["vertno"] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.zeros((n_verts * n_time))
stc_data[(np.random.rand(20) * n_verts * n_time).astype(int)] = 1
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1)
colormap = mne_analyze_colormap(format="matplotlib")
# don't really need to test matplotlib method since it's not used now...
colormap = mne_analyze_colormap()
plot_source_estimates(
stc, "sample", colormap=colormap, config_opts={"background": (1, 1, 0)}, subjects_dir=subjects_dir
)
assert_raises(RuntimeError, plot_source_estimates, stc, "sample", figure="foo", hemi="both")
# now do sparse version
vertices = sample_src[0]["vertno"]
n_verts = len(vertices)
stc_data = np.zeros((n_verts * n_time))
stc_data[(np.random.rand(20) * n_verts * n_time).astype(int)] = 1
stc_data.shape = (n_verts, n_time)
inds = np.where(np.any(stc_data, axis=1))[0]
stc_data = stc_data[inds]
vertices = vertices[inds]
stc = SourceEstimate(stc_data, vertices, 1, 1)
plot_sparse_source_estimates(sample_src, stc, bgcolor=(1, 1, 1), opacity=0.5, high_resolution=True)
def test_plot_sparse_source_estimates():
"""Test plotting of (sparse) source estimates
"""
sample_src = read_source_spaces(op.join(data_dir, 'subjects', 'sample',
'bem', 'sample-oct-6-src.fif'))
# dense version
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.zeros((n_verts * n_time))
stc_data[(np.random.rand(20) * n_verts * n_time).astype(int)] = 1
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1)
colormap = mne_analyze_colormap(format='matplotlib')
# don't really need to test matplotlib method since it's not used now...
colormap = mne_analyze_colormap()
plot_source_estimates(stc, 'sample', colormap=colormap,
config_opts={'background': (1, 1, 0)},
subjects_dir=subjects_dir, colorbar=True)
assert_raises(TypeError, plot_source_estimates, stc, 'sample',
figure='foo', hemi='both')
# now do sparse version
vertices = sample_src[0]['vertno']
inds = [111, 333]
stc_data = np.zeros((len(inds), n_time))
stc_data[0, 1] = 1.
stc_data[1, 4] = 2.
vertices = [vertices[inds], np.empty(0, dtype=np.int)]
stc = SourceEstimate(stc_data, vertices, 1, 1)
plot_sparse_source_estimates(sample_src, stc, bgcolor=(1, 1, 1),
opacity=0.5, high_resolution=False)
def test_process_clim_plot(renderer_interactive, brain_gc):
"""Test functionality for determining control points with stc.plot."""
_check_skip_pysurfer(renderer_interactive)
sample_src = read_source_spaces(src_fname)
kwargs = dict(subjects_dir=subjects_dir,
smoothing_steps=1,
time_viewer=False,
show_traces=False)
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.random.RandomState(0).rand((n_verts * n_time))
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1, 'sample')
# Test for simple use cases
brain = stc.plot(**kwargs)
assert brain.data['center'] is None
brain.close()
brain = stc.plot(clim=dict(pos_lims=(10, 50, 90)), **kwargs)
assert brain.data['center'] == 0.
brain.close()
brain = stc.plot(colormap='hot', clim='auto', **kwargs)
brain.close()
brain = stc.plot(colormap='mne', clim='auto', **kwargs)
brain.close()
brain = stc.plot(clim=dict(kind='value', lims=(10, 50, 90)),
figure=99,
**kwargs)
brain.close()
with pytest.raises(TypeError, match='must be a'):
stc.plot(clim='auto', figure=[0], **kwargs)
# Test for correct clim values
with pytest.raises(ValueError, match='monotonically'):
stc.plot(clim=dict(kind='value', pos_lims=[0, 1, 0]), **kwargs)
with pytest.raises(ValueError, match=r'.*must be \(3,\)'):
stc.plot(colormap='mne', clim=dict(pos_lims=(5, 10, 15, 20)), **kwargs)
with pytest.raises(ValueError, match="'value', 'values', and 'percent'"):
stc.plot(clim=dict(pos_lims=(5, 10, 15), kind='foo'), **kwargs)
with pytest.raises(ValueError, match='must be "auto" or dict'):
stc.plot(colormap='mne', clim='foo', **kwargs)
with pytest.raises(TypeError, match='must be an instance of'):
plot_source_estimates('foo', clim='auto', **kwargs)
with pytest.raises(ValueError, match='hemi'):
stc.plot(hemi='foo', clim='auto', **kwargs)
with pytest.raises(ValueError, match='Exactly one'):
stc.plot(clim=dict(lims=[0, 1, 2], pos_lims=[0, 1, 2], kind='value'),
**kwargs)
# Test handling of degenerate data: thresholded maps
stc._data.fill(0.)
with pytest.warns(RuntimeWarning, match='All data were zero'):
brain = plot_source_estimates(stc, **kwargs)
brain.close()
def test_plot_sparse_source_estimates(renderer_interactive, brain_gc):
"""Test plotting of (sparse) source estimates."""
_check_skip_pysurfer(renderer_interactive)
sample_src = read_source_spaces(src_fname)
# dense version
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.zeros((n_verts * n_time))
stc_size = stc_data.size
stc_data[(np.random.rand(stc_size // 20) * stc_size).astype(int)] = \
np.random.RandomState(0).rand(stc_data.size // 20)
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1)
colormap = 'mne_analyze'
brain = plot_source_estimates(stc,
'sample',
colormap=colormap,
background=(1, 1, 0),
subjects_dir=subjects_dir,
colorbar=True,
clim='auto')
brain.close()
del brain
with pytest.raises(TypeError, match='figure must be'):
plot_source_estimates(stc,
'sample',
figure='foo',
hemi='both',
clim='auto',
subjects_dir=subjects_dir)
# now do sparse version
vertices = sample_src[0]['vertno']
inds = [111, 333]
stc_data = np.zeros((len(inds), n_time))
stc_data[0, 1] = 1.
stc_data[1, 4] = 2.
vertices = [vertices[inds], np.empty(0, dtype=np.int64)]
stc = SourceEstimate(stc_data, vertices, 1, 1)
surf = plot_sparse_source_estimates(sample_src,
stc,
bgcolor=(1, 1, 1),
opacity=0.5,
high_resolution=False)
if renderer_interactive._get_3d_backend() == 'mayavi':
import mayavi # noqa: F401 analysis:ignore
assert isinstance(surf, mayavi.modules.surface.Surface)
def test_limits_to_control_points():
"""Test functionality for determing control points."""
sample_src = read_source_spaces(src_fname)
kwargs = dict(subjects_dir=subjects_dir, smoothing_steps=1)
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.random.RandomState(0).rand((n_verts * n_time))
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1, 'sample')
# Test for simple use cases
mlab = _import_mlab()
stc.plot(**kwargs)
stc.plot(clim=dict(pos_lims=(10, 50, 90)), **kwargs)
stc.plot(colormap='hot', clim='auto', **kwargs)
stc.plot(colormap='mne', clim='auto', **kwargs)
figs = [mlab.figure(), mlab.figure()]
stc.plot(clim=dict(kind='value', lims=(10, 50, 90)), figure=99, **kwargs)
assert_raises(ValueError, stc.plot, clim='auto', figure=figs, **kwargs)
# Test both types of incorrect limits key (lims/pos_lims)
assert_raises(KeyError, plot_source_estimates, stc, colormap='mne',
clim=dict(kind='value', lims=(5, 10, 15)), **kwargs)
assert_raises(KeyError, plot_source_estimates, stc, colormap='hot',
clim=dict(kind='value', pos_lims=(5, 10, 15)), **kwargs)
# Test for correct clim values
assert_raises(ValueError, stc.plot,
clim=dict(kind='value', pos_lims=[0, 1, 0]), **kwargs)
assert_raises(ValueError, stc.plot, colormap='mne',
clim=dict(pos_lims=(5, 10, 15, 20)), **kwargs)
assert_raises(ValueError, stc.plot,
clim=dict(pos_lims=(5, 10, 15), kind='foo'), **kwargs)
assert_raises(ValueError, stc.plot, colormap='mne', clim='foo', **kwargs)
assert_raises(ValueError, stc.plot, clim=(5, 10, 15), **kwargs)
assert_raises(ValueError, plot_source_estimates, 'foo', clim='auto',
**kwargs)
assert_raises(ValueError, stc.plot, hemi='foo', clim='auto', **kwargs)
# Test handling of degenerate data
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter('always')
# thresholded maps
stc._data.fill(0.)
plot_source_estimates(stc, **kwargs)
assert_equal(len(w), 1)
mlab.close(all=True)
def test_limits_to_control_points():
"""Test functionality for determing control points."""
sample_src = read_source_spaces(src_fname)
kwargs = dict(subjects_dir=subjects_dir, smoothing_steps=1)
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.random.RandomState(0).rand((n_verts * n_time))
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1, 'sample')
# Test for simple use cases
mlab = _import_mlab()
stc.plot(**kwargs)
stc.plot(clim=dict(pos_lims=(10, 50, 90)), **kwargs)
stc.plot(colormap='hot', clim='auto', **kwargs)
stc.plot(colormap='mne', clim='auto', **kwargs)
figs = [mlab.figure(), mlab.figure()]
stc.plot(clim=dict(kind='value', lims=(10, 50, 90)), figure=99, **kwargs)
assert_raises(ValueError, stc.plot, clim='auto', figure=figs, **kwargs)
# Test both types of incorrect limits key (lims/pos_lims)
assert_raises(KeyError, plot_source_estimates, stc, colormap='mne',
clim=dict(kind='value', lims=(5, 10, 15)), **kwargs)
assert_raises(KeyError, plot_source_estimates, stc, colormap='hot',
clim=dict(kind='value', pos_lims=(5, 10, 15)), **kwargs)
# Test for correct clim values
assert_raises(ValueError, stc.plot,
clim=dict(kind='value', pos_lims=[0, 1, 0]), **kwargs)
assert_raises(ValueError, stc.plot, colormap='mne',
clim=dict(pos_lims=(5, 10, 15, 20)), **kwargs)
assert_raises(ValueError, stc.plot,
clim=dict(pos_lims=(5, 10, 15), kind='foo'), **kwargs)
assert_raises(ValueError, stc.plot, colormap='mne', clim='foo', **kwargs)
assert_raises(ValueError, stc.plot, clim=(5, 10, 15), **kwargs)
assert_raises(ValueError, plot_source_estimates, 'foo', clim='auto',
**kwargs)
assert_raises(ValueError, stc.plot, hemi='foo', clim='auto', **kwargs)
# Test handling of degenerate data
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter('always')
# thresholded maps
stc._data.fill(0.)
plot_source_estimates(stc, **kwargs)
assert any('All data were zero' in str(ww.message) for ww in w)
mlab.close(all=True)
def test_link_brains(renderer_interactive):
"""Test plotting linked brains."""
sample_src = read_source_spaces(src_fname)
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.zeros((n_verts * n_time))
stc_size = stc_data.size
stc_data[(np.random.rand(stc_size // 20) * stc_size).astype(int)] = \
np.random.RandomState(0).rand(stc_data.size // 20)
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1)
colormap = 'mne_analyze'
brain = plot_source_estimates(stc,
'sample',
colormap=colormap,
background=(1, 1, 0),
subjects_dir=subjects_dir,
colorbar=True,
clim='auto')
if renderer_interactive._get_3d_backend() == 'mayavi':
with pytest.raises(NotImplementedError, match='backend is pyvistaqt'):
link_brains(brain)
else:
with pytest.raises(ValueError, match='is empty'):
link_brains([])
with pytest.raises(TypeError, match='type is Brain'):
link_brains('foo')
link_brains(brain, time=True, camera=True)
def test_link_brains(renderer):
"""Test plotting linked brains."""
if renderer.get_3d_backend() == "mayavi":
pytest.skip() # Skip PySurfer.TimeViewer
else:
# Disable testing to allow interactive window
renderer.MNE_3D_BACKEND_TESTING = False
with pytest.raises(ValueError, match='is empty'):
link_brains([])
with pytest.raises(TypeError, match='type is Brain'):
link_brains('foo')
sample_src = read_source_spaces(src_fname)
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.zeros((n_verts * n_time))
stc_size = stc_data.size
stc_data[(np.random.rand(stc_size // 20) * stc_size).astype(int)] = \
np.random.RandomState(0).rand(stc_data.size // 20)
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1)
colormap = 'mne_analyze'
brain = plot_source_estimates(stc,
'sample',
colormap=colormap,
background=(1, 1, 0),
subjects_dir=subjects_dir,
colorbar=True,
clim='auto')
link_brains(brain)
def test_limits_to_control_points():
"""Test functionality for determining control points."""
sample_src = read_source_spaces(src_fname)
kwargs = dict(subjects_dir=subjects_dir, smoothing_steps=1)
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.random.RandomState(0).rand((n_verts * n_time))
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1, 'sample')
# Test for simple use cases
mlab = _import_mlab()
stc.plot(**kwargs)
stc.plot(clim=dict(pos_lims=(10, 50, 90)), **kwargs)
stc.plot(colormap='hot', clim='auto', **kwargs)
stc.plot(colormap='mne', clim='auto', **kwargs)
figs = [mlab.figure(), mlab.figure()]
stc.plot(clim=dict(kind='value', lims=(10, 50, 90)), figure=99, **kwargs)
pytest.raises(ValueError, stc.plot, clim='auto', figure=figs, **kwargs)
# Test for correct clim values
with pytest.raises(ValueError, match='monotonically'):
stc.plot(clim=dict(kind='value', pos_lims=[0, 1, 0]), **kwargs)
with pytest.raises(ValueError, match=r'.*must be \(3,\)'):
stc.plot(colormap='mne', clim=dict(pos_lims=(5, 10, 15, 20)), **kwargs)
with pytest.raises(ValueError, match="'value', 'values' and 'percent'"):
stc.plot(clim=dict(pos_lims=(5, 10, 15), kind='foo'), **kwargs)
with pytest.raises(ValueError, match='must be "auto" or dict'):
stc.plot(colormap='mne', clim='foo', **kwargs)
with pytest.raises(TypeError, match='must be an instance of'):
plot_source_estimates('foo', clim='auto', **kwargs)
with pytest.raises(ValueError, match='hemi'):
stc.plot(hemi='foo', clim='auto', **kwargs)
with pytest.raises(ValueError, match='Exactly one'):
stc.plot(clim=dict(lims=[0, 1, 2], pos_lims=[0, 1, 2], kind='value'),
**kwargs)
# Test handling of degenerate data: thresholded maps
stc._data.fill(0.)
with pytest.warns(RuntimeWarning, match='All data were zero'):
plot_source_estimates(stc, **kwargs)
mlab.close(all=True)
def test_limits_to_control_points():
"""Test functionality for determining control points."""
sample_src = read_source_spaces(src_fname)
kwargs = dict(subjects_dir=subjects_dir, smoothing_steps=1)
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.random.RandomState(0).rand((n_verts * n_time))
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1, 'sample')
# Test for simple use cases
mlab = _import_mlab()
stc.plot(**kwargs)
stc.plot(clim=dict(pos_lims=(10, 50, 90)), **kwargs)
stc.plot(colormap='hot', clim='auto', **kwargs)
stc.plot(colormap='mne', clim='auto', **kwargs)
figs = [mlab.figure(), mlab.figure()]
stc.plot(clim=dict(kind='value', lims=(10, 50, 90)), figure=99, **kwargs)
pytest.raises(ValueError, stc.plot, clim='auto', figure=figs, **kwargs)
# Test for correct clim values
with pytest.raises(ValueError, match='monotonically'):
stc.plot(clim=dict(kind='value', pos_lims=[0, 1, 0]), **kwargs)
with pytest.raises(ValueError, match=r'.*must be \(3,\)'):
stc.plot(colormap='mne', clim=dict(pos_lims=(5, 10, 15, 20)), **kwargs)
with pytest.raises(ValueError, match='must be "value" or "percent"'):
stc.plot(clim=dict(pos_lims=(5, 10, 15), kind='foo'), **kwargs)
with pytest.raises(ValueError, match='must be "auto" or dict'):
stc.plot(colormap='mne', clim='foo', **kwargs)
with pytest.raises(TypeError, match='must be an instance of'):
plot_source_estimates('foo', clim='auto', **kwargs)
with pytest.raises(ValueError, match='hemi'):
stc.plot(hemi='foo', clim='auto', **kwargs)
with pytest.raises(ValueError, match='Exactly one'):
stc.plot(clim=dict(lims=[0, 1, 2], pos_lims=[0, 1, 2], kind='value'),
**kwargs)
# Test handling of degenerate data: thresholded maps
stc._data.fill(0.)
with pytest.warns(RuntimeWarning, match='All data were zero'):
plot_source_estimates(stc, **kwargs)
mlab.close(all=True)
def test_plot_sparse_source_estimates():
"""Test plotting of (sparse) source estimates
"""
# dense version
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.zeros((n_verts * n_time))
stc_data[(np.random.rand(20) * n_verts * n_time).astype(int)] = 1
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1)
colormap = mne_analyze_colormap(format='matplotlib')
# don't really need to test matplotlib method since it's not used now...
colormap = mne_analyze_colormap()
plot_source_estimates(stc,
'sample',
colormap=colormap,
config_opts={'background': (1, 1, 0)})
assert_raises(RuntimeError,
plot_source_estimates,
stc,
'sample',
figure='foo',
hemi='both')
# now do sparse version
vertices = sample_src[0]['vertno']
n_verts = len(vertices)
stc_data = np.zeros((n_verts * n_time))
stc_data[(np.random.rand(20) * n_verts * n_time).astype(int)] = 1
stc_data.shape = (n_verts, n_time)
inds = np.where(np.any(stc_data, axis=1))[0]
stc_data = stc_data[inds]
vertices = vertices[inds]
stc = SourceEstimate(stc_data, vertices, 1, 1)
plot_sparse_source_estimates(sample_src,
stc,
bgcolor=(1, 1, 1),
opacity=0.5,
high_resolution=True)
def test_limits_to_control_points():
"""Test functionality for determing control points
"""
sample_src = read_source_spaces(src_fname)
vertices = [s['vertno'] for s in sample_src]
n_time = 5
n_verts = sum(len(v) for v in vertices)
stc_data = np.random.RandomState(0).rand((n_verts * n_time))
stc_data.shape = (n_verts, n_time)
stc = SourceEstimate(stc_data, vertices, 1, 1, 'sample')
# Test for simple use cases
from mayavi import mlab
stc.plot(subjects_dir=subjects_dir)
stc.plot(clim=dict(pos_lims=(10, 50, 90)), subjects_dir=subjects_dir)
stc.plot(clim=dict(kind='value', lims=(10, 50, 90)), figure=99,
subjects_dir=subjects_dir)
stc.plot(colormap='hot', clim='auto', subjects_dir=subjects_dir)
stc.plot(colormap='mne', clim='auto', subjects_dir=subjects_dir)
figs = [mlab.figure(), mlab.figure()]
assert_raises(RuntimeError, stc.plot, clim='auto', figure=figs,
subjects_dir=subjects_dir)
# Test both types of incorrect limits key (lims/pos_lims)
assert_raises(KeyError, plot_source_estimates, stc, colormap='mne',
clim=dict(kind='value', lims=(5, 10, 15)),
subjects_dir=subjects_dir)
assert_raises(KeyError, plot_source_estimates, stc, colormap='hot',
clim=dict(kind='value', pos_lims=(5, 10, 15)),
subjects_dir=subjects_dir)
# Test for correct clim values
assert_raises(ValueError, stc.plot,
clim=dict(kind='value', pos_lims=[0, 1, 0]),
subjects_dir=subjects_dir)
assert_raises(ValueError, stc.plot, colormap='mne',
clim=dict(pos_lims=(5, 10, 15, 20)),
subjects_dir=subjects_dir)
assert_raises(ValueError, stc.plot,
clim=dict(pos_lims=(5, 10, 15), kind='foo'),
subjects_dir=subjects_dir)
assert_raises(ValueError, stc.plot, colormap='mne', clim='foo',
subjects_dir=subjects_dir)
assert_raises(ValueError, stc.plot, clim=(5, 10, 15),
subjects_dir=subjects_dir)
assert_raises(ValueError, plot_source_estimates, 'foo', clim='auto',
subjects_dir=subjects_dir)
assert_raises(ValueError, stc.plot, hemi='foo', clim='auto',
subjects_dir=subjects_dir)
# Test handling of degenerate data
stc.plot(clim=dict(kind='value', lims=[0, 0, 1]),
subjects_dir=subjects_dir) # ok
with warnings.catch_warnings(record=True) as w:
warnings.simplefilter('always')
# thresholded maps
stc._data.fill(1.)
plot_source_estimates(stc, subjects_dir=subjects_dir)
assert_equal(len(w), 0)
stc._data[0].fill(0.)
plot_source_estimates(stc, subjects_dir=subjects_dir)
assert_equal(len(w), 0)
stc._data.fill(0.)
plot_source_estimates(stc, subjects_dir=subjects_dir)
assert_equal(len(w), 1)
mlab.close()
